KEGG   PATHWAY: hoc04621
Entry
hoc04621                    Pathway                                
Name
NOD-like receptor signaling pathway - Hemiscyllium ocellatum (epaulette shark)
Description
Specific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains more than 20 members in mammals and plays a pivotal role in the recognition of intracellular ligands. NOD1 and NOD2, two prototypic NLRs, sense the cytosolic presence of the bacterial peptidoglycan fragments that escaped from endosomal compartments, driving the activation of NF-{kappa}B and MAPK, cytokine production and apoptosis. On the other hand, a different set of NLRs induces caspase-1 activation through the assembly of multiprotein complexes called inflammasomes. The activated of caspase-1 regulates maturation of the pro-inflammatory cytokines IL-1B, IL-18 and drives pyroptosis.
Class
Organismal Systems; Immune system
Pathway map
hoc04621  NOD-like receptor signaling pathway
hoc04621

Organism
Hemiscyllium ocellatum (epaulette shark) [GN:hoc]
Gene
132805532  tnfaip3; tumor necrosis factor alpha-induced protein 3 isoform X1 [KO:K11859] [EC:3.4.19.12]
132805786  gprc6a; G-protein coupled receptor family C group 6 member A [KO:K04622]
132805837  [KO:K11220]
132807016  [KO:K11974] [EC:2.3.2.31]
132807017  [KO:K04693]
132809022  ikbkg; NF-kappa-B essential modulator [KO:K07210]
132809025  si:dkey-32e23.4; dynamin-1-like protein isoform X1 [KO:K17065] [EC:3.6.5.5]
132809349  il1b; interleukin-1 beta [KO:K04519]
132811103  [KO:K20910]
132813073  atg12; ubiquitin-like protein ATG12 [KO:K08336]
132815016  ripk2; receptor-interacting serine/threonine-protein kinase 2 [KO:K08846] [EC:2.7.11.1]
132815068  myd88; myeloid differentiation primary response protein MyD88 [KO:K04729]
132815444  si:dkey-181m9.8; uncharacterized protein si:dkey-181m9.8 isoform X1 [KO:K11974] [EC:2.3.2.31]
132815631  [KO:K02161]
132815896  shrprbck1r; ranBP-type and C3HC4-type zinc finger-containing protein 1 [KO:K10630] [EC:2.3.2.31]
132815932  il6; interleukin-6 [KO:K05405]
132816336  birc2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
132816354  sugt1; protein SGT1 homolog isoform X1 [KO:K12795]
132816505  antxr2a; ANTXR cell adhesion molecule 2a [KO:K20909]
132816570  [KO:K17890]
132816688  panx1a; pannexin-1a isoform X1 [KO:K03443]
132817161  [KO:K11220]
132817445  [KO:K12650]
132817675  trpm2; LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily M member 2 [KO:K04977] [EC:3.6.1.13]
132817808  [KO:K05858] [EC:3.1.4.11]
132817881  nfkbiab; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [KO:K04734]
132817941  traf3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
132818344  [KO:K04079]
132818750  jun; transcription factor AP-1 [KO:K04448]
132818933  [KO:K01165]
132818989  nek7; serine/threonine-protein kinase Nek7 [KO:K20876] [EC:2.7.11.34]
132819061  jak1; tyrosine-protein kinase JAK1 isoform X1 [KO:K11217] [EC:2.7.10.2]
132819182  [KO:K23691]
132819280  [KO:K10435]
132819288  [KO:K01363] [EC:3.4.22.1]
132819400  [KO:K09849]
132819522  [KO:K05858] [EC:3.1.4.11]
132819694  [KO:K12805]
132819859  tab2; TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 [KO:K04404]
132819886  [KO:K05858] [EC:3.1.4.11]
132820108  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
132820159  [KO:K04725] [EC:2.3.2.27]
132820242  [KO:K10030]
132820251  [KO:K10030]
132820261  [KO:K10030]
132820268  [KO:K10030]
132820272  [KO:K10030]
132820281  [KO:K10030]
132820485  brcc3; lys-63-specific deubiquitinase isoform X1 [KO:K11864] [EC:3.4.19.-]
132820754  [KO:K21421] [EC:1.-.-.-]
132820790  casr; extracellular calcium-sensing receptor [KO:K04612]
132821030  tab3; TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 isoform X1 [KO:K12793]
132821885  [KO:K21356] [EC:3.6.5.-]
132821941  [KO:K17890]
132822200  [KO:K06068] [EC:2.7.11.13]
132822248  [KO:K04513]
132822275  zgc:171775; STKc_p38 domain-containing protein isoform X1 [KO:K04441] [EC:2.7.11.24]
132822278  erbin; erbin isoform X1 [KO:K12796]
132822387  itpr1b; inositol 1,4,5-trisphosphate receptor type 1 [KO:K04958]
132822481  nampt2; LOW QUALITY PROTEIN: nicotinamide phosphoribosyltransferase 2 [KO:K03462] [EC:2.4.2.12]
132822688  bcl2l1; bcl-2-like protein 1 isoform X1 [KO:K04570]
132822794  [KO:K10435]
132823000  rbck1; ranBP-type and C3HC4-type zinc finger-containing protein 1 [KO:K10630] [EC:2.3.2.31]
132823069  sting1; stimulator of interferon genes protein [KO:K12654]
132823202  [KO:K10030]
132823388  [KO:K02580]
132823401  [KO:K04440] [EC:2.7.11.24]
132823437  vdac1; voltage-dependent anion-selective channel protein 1 [KO:K05862]
132823672  gabarapl2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
132823683  [KO:K08009]
132823931  map1lc3b; microtubule-associated proteins 1A/1B light chain 3B [KO:K10435]
132824362  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
132824457  irf7; interferon regulatory factor 7 [KO:K09447]
132824517  fadd; protein FADD [KO:K02373]
132824735  [KO:K03671]
132824857  tbk1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
132824917  [KO:K04733] [EC:2.7.11.1]
132824970  [KO:K17065] [EC:3.6.5.5]
132824988  nampt1; nicotinamide phosphoribosyltransferase [KO:K03462] [EC:2.4.2.12]
132825953  card9; caspase recruitment domain-containing protein 9 isoform X1 [KO:K12794]
132826005  traf2b; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
132826727  mapk11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
132826728  [KO:K04441] [EC:2.7.11.24]
132826793  itpr2; inositol 1,4,5-trisphosphate receptor type 2 isoform X1 [KO:K04959]
132827194  mapk1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
132827453  [KO:K14216] [EC:2.7.7.84]
132828292  [KO:K07211] [EC:2.7.11.10]
132828303  rhocb; rho-related GTP-binding protein RhoA-D [KO:K04513]
132828395  [KO:K04441] [EC:2.7.11.24]
132828396  [KO:K04441] [EC:2.7.11.24]
132828404  itpr3; inositol 1,4,5-trisphosphate receptor type 3 isoform X1 [KO:K04960]
132828753  [KO:K03671]
132828975  ticam1; TIR domain-containing adapter molecule 1 [KO:K05842]
132829623  [KO:K05482]
132829639  nlrx1; NLR family member X1 [KO:K12653]
132829672  [KO:K05482]
132829929  [KO:K04513]
132829959  [KO:K11859] [EC:3.4.19.12]
132830173  [KO:K04079]
132830292  [KO:K01370] [EC:3.4.22.36]
132830450  dhx33; ATP-dependent RNA helicase DHX33 [KO:K17820] [EC:5.6.2.6]
132830513  ywhae1; tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1 [KO:K06630]
132830747  ifnphi4; interferon phi 4 [KO:K05414]
132830748  [KO:K05414]
132831144  tab1; TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 [KO:K04403]
132831323  txn2; thioredoxin, mitochondrial [KO:K03671]
132831379  atg5; autophagy protein 5 isoform X1 [KO:K08339]
132831443  [KO:K05411]
132832207  [KO:K08727]
132832211  [KO:K04622]
132832250  nod1; nucleotide-binding oligomerization domain-containing protein 1 [KO:K08727]
132832326  ripk1l; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
132832374  [KO:K20899]
132832413  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
132832429  [KO:K03173] [EC:2.3.2.27]
132832533  [KO:K03173] [EC:2.3.2.27]
132832724  [KO:K03156]
132832738  [KO:K03156]
132832745  [KO:K03156]
132832823  [KO:K03156]
132832937  [KO:K03156]
132832938  [KO:K03156]
132832939  [KO:K03156]
132832940  [KO:K03156]
132833321  [KO:K10030]
132833328  [KO:K10030]
132833369  [KO:K10030]
132833410  [KO:K02580]
132833518  mfn2; mitofusin-2 [KO:K06030] [EC:3.6.5.-]
132834016  [KO:K20899]
132834027  [KO:K20899]
132834324  trpm7; transient receptor potential cation channel subfamily M member 7 isoform X1 [KO:K04982] [EC:2.7.11.1]
132834760  [KO:K12804]
132834863  tp53bp1; TP53-binding protein 1 isoform X1 [KO:K20915]
132834906  [KO:K20909]
132835015  mcu; calcium uniporter protein, mitochondrial [KO:K20858]
132835028  [KO:K04440] [EC:2.7.11.24]
132835109  chuk; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
132835111  vdac2; voltage-dependent anion-selective channel protein 2 [KO:K15040]
132835142  [KO:K08341]
132835212  [KO:K12807]
132835225  [KO:K12807]
132835310  trip6; thyroid receptor-interacting protein 6 [KO:K12792]
132835428  [KO:K04622]
132835444  [KO:K04622]
132836005  tyk2; non-receptor tyrosine-protein kinase TYK2 isoform X1 [KO:K11219] [EC:2.7.10.2]
132836063  pkn1a; serine/threonine-protein kinase N2 isoform X1 [KO:K06071] [EC:2.7.11.13]
132836104  [KO:K05858] [EC:3.1.4.11]
132836144  [KO:K10435]
132836598  [KO:K02581]
132836599  [KO:K04734]
132836633  [KO:K03671]
132836634  [KO:K03671]
132836635  [KO:K03671]
132836696  [KO:K03174]
132836867  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
132837029  [KO:K20909]
132837033  vdac3; voltage-dependent anion-selective channel protein 3 isoform X1 [KO:K15041]
Compound
C00002  ATP
C00076  Calcium cation
C00155  L-Homocysteine
C00238  Potassium cation
C00533  Nitric oxide
C01245  D-myo-Inositol 1,4,5-trisphosphate
Reference
  Authors
Vandenabeele P, Bertrand MJ
  Title
The role of the IAP E3 ubiquitin ligases in regulating pattern-recognition receptor signalling.
  Journal
Nat Rev Immunol 12:833-44 (2012)
DOI:10.1038/nri3325
Reference
  Authors
Strober W, Murray PJ, Kitani A, Watanabe T
  Title
Signalling pathways and molecular interactions of NOD1 and NOD2.
  Journal
Nat Rev Immunol 6:9-20 (2006)
DOI:10.1038/nri1747
Reference
  Authors
Estornes Y, Bertrand MJ
  Title
IAPs, regulators of innate immunity and inflammation.
  Journal
Semin Cell Dev Biol 39:106-14 (2015)
DOI:10.1016/j.semcdb.2014.03.035
Reference
  Authors
Jakopin Z
  Title
Nucleotide-binding oligomerization domain (NOD) inhibitors: a rational approach toward inhibition of NOD signaling pathway.
  Journal
J Med Chem 57:6897-918 (2014)
DOI:10.1021/jm401841p
Reference
  Authors
Caruso R, Warner N, Inohara N, Nunez G
  Title
NOD1 and NOD2: signaling, host defense, and inflammatory disease.
  Journal
Immunity 41:898-908 (2014)
DOI:10.1016/j.immuni.2014.12.010
Reference
  Authors
Murray PJ
  Title
Beyond peptidoglycan for Nod2.
  Journal
Nat Immunol 10:1053-4 (2009)
DOI:10.1038/ni1009-1053
Reference
  Authors
Lecat A, Piette J, Legrand-Poels S
  Title
The protein Nod2: an innate receptor more complex than previously assumed.
  Journal
Biochem Pharmacol 80:2021-31 (2010)
DOI:10.1016/j.bcp.2010.07.016
Reference
  Authors
Man SM, Kanneganti TD
  Title
Converging roles of caspases in inflammasome activation, cell death and innate immunity.
  Journal
Nat Rev Immunol 16:7-21 (2016)
DOI:10.1038/nri.2015.7
Reference
  Authors
Broz P, Dixit VM
  Title
Inflammasomes: mechanism of assembly, regulation and signalling.
  Journal
Nat Rev Immunol 16:407-20 (2016)
DOI:10.1038/nri.2016.58
Reference
  Authors
Man SM, Kanneganti TD
  Title
Regulation of inflammasome activation.
  Journal
Immunol Rev 265:6-21 (2015)
DOI:10.1111/imr.12296
Reference
  Authors
Jo EK, Kim JK, Shin DM, Sasakawa C
  Title
Molecular mechanisms regulating NLRP3 inflammasome activation.
  Journal
Cell Mol Immunol 13:148-59 (2016)
DOI:10.1038/cmi.2015.95
Reference
  Authors
Broz P, Monack DM
  Title
Newly described pattern recognition receptors team up against intracellular pathogens.
  Journal
Nat Rev Immunol 13:551-65 (2013)
DOI:10.1038/nri3479
Reference
  Authors
Rathinam VA, Vanaja SK, Fitzgerald KA
  Title
Regulation of inflammasome signaling.
  Journal
Nat Immunol 13:333-42 (2012)
DOI:10.1038/ni.2237
Reference
  Authors
Sutterwala FS, Haasken S, Cassel SL
  Title
Mechanism of NLRP3 inflammasome activation.
  Journal
Ann N Y Acad Sci 1319:82-95 (2014)
DOI:10.1111/nyas.12458
Reference
  Authors
Latz E, Xiao TS, Stutz A
  Title
Activation and regulation of the inflammasomes.
  Journal
Nat Rev Immunol 13:397-411 (2013)
DOI:10.1038/nri3452
Reference
  Authors
Blander JM
  Title
A long-awaited merger of the pathways mediating host defence and programmed cell death.
  Journal
Nat Rev Immunol 14:601-18 (2014)
DOI:10.1038/nri3720
Reference
  Authors
von Moltke J, Ayres JS, Kofoed EM, Chavarria-Smith J, Vance RE
  Title
Recognition of bacteria by inflammasomes.
  Journal
Annu Rev Immunol 31:73-106 (2013)
DOI:10.1146/annurev-immunol-032712-095944
Reference
  Authors
Abais JM, Xia M, Zhang Y, Boini KM, Li PL
  Title
Redox regulation of NLRP3 inflammasomes: ROS as trigger or effector?
  Journal
Antioxid Redox Signal 22:1111-29 (2015)
DOI:10.1089/ars.2014.5994
Reference
  Authors
Storek KM, Monack DM
  Title
Bacterial recognition pathways that lead to inflammasome activation.
  Journal
Immunol Rev 265:112-29 (2015)
DOI:10.1111/imr.12289
Reference
  Authors
Hu H, Sun SC
  Title
Ubiquitin signaling in immune responses.
  Journal
Cell Res 26:457-83 (2016)
DOI:10.1038/cr.2016.40
Reference
  Authors
Guo H, Callaway JB, Ting JP
  Title
Inflammasomes: mechanism of action, role in disease, and therapeutics.
  Journal
Nat Med 21:677-87 (2015)
DOI:10.1038/nm.3893
Reference
  Authors
Man SM, Kanneganti TD
  Title
Gasdermin D: the long-awaited executioner of pyroptosis.
  Journal
Cell Res 25:1183-4 (2015)
DOI:10.1038/cr.2015.124
Reference
  Authors
Rathinam VA, Vanaja SK, Waggoner L, Sokolovska A, Becker C, Stuart LM, Leong JM, Fitzgerald KA
  Title
TRIF licenses caspase-11-dependent NLRP3 inflammasome activation by gram-negative bacteria.
  Journal
Cell 150:606-19 (2012)
DOI:10.1016/j.cell.2012.07.007
Reference
  Authors
Kerur N, Veettil MV, Sharma-Walia N, Bottero V, Sadagopan S, Otageri P, Chandran B
  Title
IFI16 acts as a nuclear pathogen sensor to induce the inflammasome in response to Kaposi Sarcoma-associated herpesvirus infection.
  Journal
Cell Host Microbe 9:363-75 (2011)
DOI:10.1016/j.chom.2011.04.008
Reference
  Authors
Heilig R, Broz P
  Title
Function and mechanism of the pyrin inflammasome.
  Journal
Eur J Immunol 48:230-238 (2018)
DOI:10.1002/eji.201746947
Reference
  Authors
Chakrabarti A, Banerjee S, Franchi L, Loo YM, Gale M Jr, Nunez G, Silverman RH
  Title
RNase L activates the NLRP3 inflammasome during viral infections.
  Journal
Cell Host Microbe 17:466-77 (2015)
DOI:10.1016/j.chom.2015.02.010
Related
pathway
hoc04010  MAPK signaling pathway
hoc04140  Autophagy - animal
hoc04620  Toll-like receptor signaling pathway
KO pathway
ko04621   

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