KEGG   PATHWAY: ko04621
Entry
ko04621                     Pathway                                
Name
NOD-like receptor signaling pathway
Description
Specific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains more than 20 members in mammals and plays a pivotal role in the recognition of intracellular ligands. NOD1 and NOD2, two prototypic NLRs, sense the cytosolic presence of the bacterial peptidoglycan fragments that escaped from endosomal compartments, driving the activation of NF-{kappa}B and MAPK, cytokine production and apoptosis. On the other hand, a different set of NLRs induces caspase-1 activation through the assembly of multiprotein complexes called inflammasomes. The activated of caspase-1 regulates maturation of the pro-inflammatory cytokines IL-1B, IL-18 and drives pyroptosis.
Class
Organismal Systems; Immune system
Pathway map
ko04621  NOD-like receptor signaling pathway
ko04621

Drug
D05706  Raxibacumab (USAN/INN)
Orthology
K01165  RNASEL; ribonuclease L
K01363  CTSB; cathepsin B [EC:3.4.22.1]
K01370  CASP1; caspase 1 [EC:3.4.22.36]
K02161  BCL2; apoptosis regulator Bcl-2
K02373  FADD; FAS-associated death domain protein
K02406  fliC, hag; flagellin
K02580  NFKB1; nuclear factor NF-kappa-B p105 subunit
K02581  NFKBIB; NF-kappa-B inhibitor beta
K02861  RIPK1, RIP1; receptor-interacting serine/threonine-protein kinase 1 [EC:2.7.11.1]
K03156  TNF, TNFA; tumor necrosis factor superfamily, member 2
K03173  TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
K03174  TRAF3; TNF receptor-associated factor 3
K03175  TRAF6; TNF receptor-associated factor 6 [EC:2.3.2.27]
K03443  PANX1; pannexin 1
K03462  NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
K03671  TXN, trxA; thioredoxin
K04079  HSP90A, htpG; molecular chaperone HtpG
K04371  ERK, MAPK1_3; mitogen-activated protein kinase 1/3 [EC:2.7.11.24]
K04394  CASP4, CASP11; caspase 4 [EC:3.4.22.57 3.4.22.64]
K04395  CASP5; caspase 5 [EC:3.4.22.58]
K04398  CASP8; caspase 8 [EC:3.4.22.61]
K04403  MAP3K7IP1, TAB1; TAK1-binding protein 1
K04404  MAP3K7IP2, TAB2; TAK1-binding protein 2
K04427  MAP3K7, TAK1; mitogen-activated protein kinase kinase kinase 7 [EC:2.7.11.25]
K04440  JNK; mitogen-activated protein kinase 8/9/10 (c-Jun N-terminal kinase) [EC:2.7.11.24]
K04441  P38; p38 MAP kinase [EC:2.7.11.24]
K04448  JUN; transcription factor AP-1
K04467  IKBKA, IKKA, CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha [EC:2.7.11.10]
K04513  RHOA; Ras homolog gene family, member A
K04519  IL1B; interleukin 1 beta
K04570  BCL2L1, bcl-xL; Bcl-2-like 1 (apoptosis regulator Bcl-X)
K04612  CASR; calcium-sensing receptor
K04622  GPRC6A; G protein-coupled receptor family C group 6 member A
K04693  IRF9, ISGF3G, P48; interferon regulatory factor 9
K04725  XIAP, BIRC4; E3 ubiquitin-protein ligase XIAP [EC:2.3.2.27]
K04729  MYD88; myeloid differentiation primary response protein MyD88
K04733  IRAK4; interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1]
K04734  NFKBIA; NF-kappa-B inhibitor alpha
K04735  RELA; transcription factor p65
K04741  CASP12; caspase 12 [EC:3.4.22.-]
K04958  ITPR1; inositol 1,4,5-triphosphate receptor type 1
K04959  ITPR2; inositol 1,4,5-triphosphate receptor type 2
K04960  ITPR3; inositol 1,4,5-triphosphate receptor type 3
K04971  TRPV2; transient receptor potential cation channel subfamily V member 2
K04977  TRPM2; transient receptor potential cation channel subfamily M member 2 [EC:3.6.1.13]
K04982  TRPM7, CHAK1; transient receptor potential cation channel subfamily M member 7 [EC:2.7.11.1]
K05130  IFNAR1; interferon receptor 1
K05131  IFNAR2; interferon receptor 2
K05220  P2RX7; P2X purinoceptor 7
K05230  DEFA; defensin, alpha
K05405  IL6; interleukin 6
K05410  TBK1; TANK-binding kinase 1 [EC:2.7.11.10]
K05411  IRF3; interferon regulatory factor 3
K05414  IFNA; interferon alpha
K05415  IFNB; interferon beta
K05482  IL18, IL1F4; interleukin 18
K05505  CXCL1_2_3, GRO; C-X-C motif chemokine 1/2/3
K05842  TRIF; toll-like receptor adapter molecule 1
K05858  PLCB; phosphatidylinositol phospholipase C, beta [EC:3.1.4.11]
K05862  VDAC1; voltage-dependent anion channel protein 1
K06030  MFN2, FZO1; mitofusin 2 [EC:3.6.5.-]
K06068  PRKCD; novel protein kinase C delta type [EC:2.7.11.13]
K06071  PKN1; serine/threonine-protein kinase N1 [EC:2.7.11.13]
K06630  YWHAE; 14-3-3 protein epsilon
K07209  IKBKB, IKKB; inhibitor of nuclear factor kappa-B kinase subunit beta [EC:2.7.11.10]
K07210  IKBKG, IKKG, NEMO; inhibitor of nuclear factor kappa-B kinase subunit gamma
K07211  IKBKE, IKKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon [EC:2.7.11.10]
K08009  CYBA, P22PHOX; cytochrome b-245, alpha polypeptide
K08336  ATG12; ubiquitin-like protein ATG12
K08339  ATG5; autophagy-related protein 5
K08341  GABARAP, ATG8, LC3; GABA(A) receptor-associated protein
K08598  yopJ; YopJ protease family
K08645  lef; anthrax lethal toxin endopeptidase [EC:3.4.24.83]
K08727  NOD1, CARD4; nucleotide-binding oligomerization domain-containing protein 1
K08846  RIPK2; receptor-interacting serine/threonine-protein kinase 2 [EC:2.7.11.1]
K08847  RIPK3; receptor-interacting serine/threonine-protein kinase 3 [EC:2.7.11.1]
K09447  IRF7; interferon regulatory factor 7
K09849  TRAF5; TNF receptor-associated factor 5
K10030  IL8, CXCL8; interleukin 8
K10160  TLR4, CD284; toll-like receptor 4
K10165  NOD2, CARD15; nucleotide-binding oligomerization domain-containing protein 2
K10435  MAP1LC; microtubule-associated protein 1 light chain
K10630  RBCK1, HOIL1; RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:2.3.2.31]
K11030  pagA; protective antigen
K11217  JAK1; Janus kinase 1 [EC:2.7.10.2]
K11219  TYK2; non-receptor tyrosine-protein kinase TYK2 [EC:2.7.10.2]
K11220  STAT1; signal transducer and activator of transcription 1
K11221  STAT2; signal transducer and activator of transcription 2
K11859  TNFAIP3, A20, OTUD7C; tumor necrosis factor, alpha-induced protein 3 [EC:3.4.19.12]
K11864  BRCC3, BRCC36; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
K11974  RNF31, HOIP; E3 ubiquitin-protein ligase RNF31 [EC:2.3.2.31]
K12499  CCL5; C-C motif chemokine 5
K12648  MAVS, IPS1; mitochondrial antiviral-signaling protein
K12650  TANK; TRAF family member-associated NF-kappa-B activator
K12653  NLRX1; NLR family member X1
K12654  STING1, TMEM173, MITA; stimulator of interferon genes protein
K12792  TRIP6; thyroid receptor-interacting protein 6
K12793  MAP3K7IP3, TAB3; TAK1-binding protein 3
K12794  CARD9; caspase recruitment domain-containing protein 9
K12795  SUGT1, SGT1; suppressor of G2 allele of SKP1
K12796  ERBIN, ERBB2IP; erbb2-interacting protein
K12797  CARD6; caspase recruitment domain-containing protein 6
K12798  NLRP1, CARD7; NACHT, LRR and PYD domains-containing protein 1
K12799  PYCARD, ASC; apoptosis-associated speck-like protein containing a CARD
K12800  NLRP3, PYPAF1; NACHT, LRR and PYD domains-containing protein 3
K12801  CARD8, CARDINAL; caspase recruitment domain-containing protein 8
K12802  PYDC1; pyrin domain-containing protein 1
K12803  MEFV; pyrin
K12804  PSTPIP1; proline-serine-threonine phosphatase interacting protein 1
K12805  NLRC4, CARD12; NLR family CARD domain-containing protein 4
K12806  CARD16_17_18; caspase recruitment domain-containing protein 16/17/18
K12807  NAIP, BIRC1; baculoviral IAP repeat-containing protein 1
K12966  AIM2; absent in melanoma 2
K13916  CAMP, LL37; cathelicidin antimicrobial peptide
K14139  IRGM, LRG47; immunity-related GTPase family M protein [EC:3.6.5.-]
K14216  OAS; 2'-5'-oligoadenylate synthetase [EC:2.7.7.84]
K14624  CCL2, MCP1; C-C motif chemokine 2
K15040  VDAC2; voltage-dependent anion channel protein 2
K15041  VDAC3; voltage-dependent anion channel protein 3
K15838  GPSM3, AGS4; G-protein signaling modulator 3
K16060  BIRC2_3; baculoviral IAP repeat-containing protein 2/3
K17065  DNM1L; dynamin 1-like protein [EC:3.6.5.5]
K17820  DHX33; ATP-dependent RNA helicase DHX33 [EC:5.6.2.6]
K17890  ATG16L1; autophagy-related protein 16-1
K20858  MCU; calcium uniporter protein, mitochondrial
K20863  NLRP6, NALP6; NACHT, LRR and PYD domains-containing protein 6
K20864  NLRP7, NALP7; NACHT, LRR and PYD domains-containing protein 7
K20865  NLRP12; NACHT, LRR and PYD domains-containing protein 12
K20876  NEK7; serine/threonine-protein kinase Nek7 [EC:2.7.11.34]
K20894  SHARPIN; shank-associated RH domain-interacting protein
K20897  GBP2; guanylate-binding protein 2
K20898  GBP5; guanylate-binding protein 5
K20899  GBP1_3_4_7; guanylate-binding protein 1/3/4/7
K20909  ANTXR; anthrax toxin receptor
K20910  TXNIP; thioredoxin-interacting protein
K20911  PYDC2, POP2; pyrin domain-containing protein 2
K20914  IFI16; gamma-interferon-inducible protein 16
K20915  TP53BP1, P202; tumor suppressor p53-binding protein 1
K20916  POP3; pyrin domain-only protein 3
K20917  GSDMD; gasdermin-D
K21100  DEFB4; beta-defensin 4
K21356  MFN1; mitofusin 1 [EC:3.6.5.-]
K21421  NOX2, GP91, CYBB; NADPH oxidase 2 [EC:1.-.-.-]
K23126  DEFB103; beta-defensin 103
K23691  PKN2; serine/threonine-protein kinase N2
Compound
C00002  ATP
C00076  Calcium cation
C00155  L-Homocysteine
C00238  Potassium cation
C00533  Nitric oxide
C01245  D-myo-Inositol 1,4,5-trisphosphate
Reference
  Authors
Vandenabeele P, Bertrand MJ
  Title
The role of the IAP E3 ubiquitin ligases in regulating pattern-recognition receptor signalling.
  Journal
Nat Rev Immunol 12:833-44 (2012)
DOI:10.1038/nri3325
Reference
  Authors
Strober W, Murray PJ, Kitani A, Watanabe T
  Title
Signalling pathways and molecular interactions of NOD1 and NOD2.
  Journal
Nat Rev Immunol 6:9-20 (2006)
DOI:10.1038/nri1747
Reference
  Authors
Estornes Y, Bertrand MJ
  Title
IAPs, regulators of innate immunity and inflammation.
  Journal
Semin Cell Dev Biol 39:106-14 (2015)
DOI:10.1016/j.semcdb.2014.03.035
Reference
  Authors
Jakopin Z
  Title
Nucleotide-binding oligomerization domain (NOD) inhibitors: a rational approach toward inhibition of NOD signaling pathway.
  Journal
J Med Chem 57:6897-918 (2014)
DOI:10.1021/jm401841p
Reference
  Authors
Caruso R, Warner N, Inohara N, Nunez G
  Title
NOD1 and NOD2: signaling, host defense, and inflammatory disease.
  Journal
Immunity 41:898-908 (2014)
DOI:10.1016/j.immuni.2014.12.010
Reference
  Authors
Murray PJ
  Title
Beyond peptidoglycan for Nod2.
  Journal
Nat Immunol 10:1053-4 (2009)
DOI:10.1038/ni1009-1053
Reference
  Authors
Lecat A, Piette J, Legrand-Poels S
  Title
The protein Nod2: an innate receptor more complex than previously assumed.
  Journal
Biochem Pharmacol 80:2021-31 (2010)
DOI:10.1016/j.bcp.2010.07.016
Reference
  Authors
Man SM, Kanneganti TD
  Title
Converging roles of caspases in inflammasome activation, cell death and innate immunity.
  Journal
Nat Rev Immunol 16:7-21 (2016)
DOI:10.1038/nri.2015.7
Reference
  Authors
Broz P, Dixit VM
  Title
Inflammasomes: mechanism of assembly, regulation and signalling.
  Journal
Nat Rev Immunol 16:407-20 (2016)
DOI:10.1038/nri.2016.58
Reference
  Authors
Man SM, Kanneganti TD
  Title
Regulation of inflammasome activation.
  Journal
Immunol Rev 265:6-21 (2015)
DOI:10.1111/imr.12296
Reference
  Authors
Jo EK, Kim JK, Shin DM, Sasakawa C
  Title
Molecular mechanisms regulating NLRP3 inflammasome activation.
  Journal
Cell Mol Immunol 13:148-59 (2016)
DOI:10.1038/cmi.2015.95
Reference
  Authors
Broz P, Monack DM
  Title
Newly described pattern recognition receptors team up against intracellular pathogens.
  Journal
Nat Rev Immunol 13:551-65 (2013)
DOI:10.1038/nri3479
Reference
  Authors
Rathinam VA, Vanaja SK, Fitzgerald KA
  Title
Regulation of inflammasome signaling.
  Journal
Nat Immunol 13:333-42 (2012)
DOI:10.1038/ni.2237
Reference
  Authors
Sutterwala FS, Haasken S, Cassel SL
  Title
Mechanism of NLRP3 inflammasome activation.
  Journal
Ann N Y Acad Sci 1319:82-95 (2014)
DOI:10.1111/nyas.12458
Reference
  Authors
Latz E, Xiao TS, Stutz A
  Title
Activation and regulation of the inflammasomes.
  Journal
Nat Rev Immunol 13:397-411 (2013)
DOI:10.1038/nri3452
Reference
  Authors
Blander JM
  Title
A long-awaited merger of the pathways mediating host defence and programmed cell death.
  Journal
Nat Rev Immunol 14:601-18 (2014)
DOI:10.1038/nri3720
Reference
  Authors
von Moltke J, Ayres JS, Kofoed EM, Chavarria-Smith J, Vance RE
  Title
Recognition of bacteria by inflammasomes.
  Journal
Annu Rev Immunol 31:73-106 (2013)
DOI:10.1146/annurev-immunol-032712-095944
Reference
  Authors
Abais JM, Xia M, Zhang Y, Boini KM, Li PL
  Title
Redox regulation of NLRP3 inflammasomes: ROS as trigger or effector?
  Journal
Antioxid Redox Signal 22:1111-29 (2015)
DOI:10.1089/ars.2014.5994
Reference
  Authors
Storek KM, Monack DM
  Title
Bacterial recognition pathways that lead to inflammasome activation.
  Journal
Immunol Rev 265:112-29 (2015)
DOI:10.1111/imr.12289
Reference
  Authors
Hu H, Sun SC
  Title
Ubiquitin signaling in immune responses.
  Journal
Cell Res 26:457-83 (2016)
DOI:10.1038/cr.2016.40
Reference
  Authors
Guo H, Callaway JB, Ting JP
  Title
Inflammasomes: mechanism of action, role in disease, and therapeutics.
  Journal
Nat Med 21:677-87 (2015)
DOI:10.1038/nm.3893
Reference
  Authors
Man SM, Kanneganti TD
  Title
Gasdermin D: the long-awaited executioner of pyroptosis.
  Journal
Cell Res 25:1183-4 (2015)
DOI:10.1038/cr.2015.124
Reference
  Authors
Rathinam VA, Vanaja SK, Waggoner L, Sokolovska A, Becker C, Stuart LM, Leong JM, Fitzgerald KA
  Title
TRIF licenses caspase-11-dependent NLRP3 inflammasome activation by gram-negative bacteria.
  Journal
Cell 150:606-19 (2012)
DOI:10.1016/j.cell.2012.07.007
Reference
  Authors
Kerur N, Veettil MV, Sharma-Walia N, Bottero V, Sadagopan S, Otageri P, Chandran B
  Title
IFI16 acts as a nuclear pathogen sensor to induce the inflammasome in response to Kaposi Sarcoma-associated herpesvirus infection.
  Journal
Cell Host Microbe 9:363-75 (2011)
DOI:10.1016/j.chom.2011.04.008
Reference
  Authors
Heilig R, Broz P
  Title
Function and mechanism of the pyrin inflammasome.
  Journal
Eur J Immunol 48:230-238 (2018)
DOI:10.1002/eji.201746947
Reference
  Authors
Chakrabarti A, Banerjee S, Franchi L, Loo YM, Gale M Jr, Nunez G, Silverman RH
  Title
RNase L activates the NLRP3 inflammasome during viral infections.
  Journal
Cell Host Microbe 17:466-77 (2015)
DOI:10.1016/j.chom.2015.02.010
Related
pathway
ko00550  Peptidoglycan biosynthesis
ko03070  Bacterial secretion system
ko04010  MAPK signaling pathway
ko04064  NF-kappa B signaling pathway
ko04140  Autophagy - animal
ko04620  Toll-like receptor signaling pathway

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