KEGG   PATHWAY: ko04621
Entry
ko04621                     Pathway                                
Name
NOD-like receptor signaling pathway
Description
Specific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains more than 20 members in mammals and plays a pivotal role in the recognition of intracellular ligands. NOD1 and NOD2, two prototypic NLRs, sense the cytosolic presence of the bacterial peptidoglycan fragments that escaped from endosomal compartments, driving the activation of NF-{kappa}B and MAPK, cytokine production and apoptosis. On the other hand, a different set of NLRs induces caspase-1 activation through the assembly of multiprotein complexes called inflammasomes. The activated of caspase-1 regulates maturation of the pro-inflammatory cytokines IL-1B, IL-18 and drives pyroptosis.
Class
Organismal Systems; Immune system
Pathway map
ko04621  NOD-like receptor signaling pathway
ko04621

Drug
D05706  Raxibacumab (USAN/INN)
Orthology
K08727  nucleotide-binding oligomerization domain-containing protein 1
K08846  receptor-interacting serine/threonine-protein kinase 2 [EC:2.7.11.1]
K07210  inhibitor of nuclear factor kappa-B kinase subunit gamma
K04467  inhibitor of nuclear factor kappa-B kinase subunit alpha [EC:2.7.11.10]
K07209  inhibitor of nuclear factor kappa-B kinase subunit beta [EC:2.7.11.10]
K02581  NF-kappa-B inhibitor beta
K04734  NF-kappa-B inhibitor alpha
K02580  nuclear factor NF-kappa-B p105 subunit
K04735  transcription factor p65
K04519  interleukin 1 beta
K05482  interleukin 18
K05405  interleukin 6
K03156  tumor necrosis factor superfamily, member 2
K10030  interleukin 8
K05505  C-X-C motif chemokine 1/2/3
K14624  C-C motif chemokine 2
K12499  C-C motif chemokine 5
K13916  cathelicidin antimicrobial peptide
K05230  defensin, alpha
K21100  beta-defensin 4
K23126  beta-defensin 103
K10165  nucleotide-binding oligomerization domain-containing protein 2
K04427  mitogen-activated protein kinase kinase kinase 7 [EC:2.7.11.25]
K04403  TAK1-binding protein 1
K04404  TAK1-binding protein 2
K12793  TAK1-binding protein 3
K04371  mitogen-activated protein kinase 1/3 [EC:2.7.11.24]
K04440  mitogen-activated protein kinase 8/9/10 (c-Jun N-terminal kinase) [EC:2.7.11.24]
K04441  p38 MAP kinase [EC:2.7.11.24]
K04448  transcription factor AP-1
K17890  autophagy-related protein 16-1
K08339  autophagy-related protein 5
K08336  ubiquitin-like protein ATG12
K08341  GABA(A) receptor-associated protein
K10435  microtubule-associated protein 1 light chain
K12795  suppressor of G2 allele of SKP1
K20894  shank-associated RH domain-interacting protein
K10630  RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:2.3.2.31]
K11974  E3 ubiquitin-protein ligase RNF31 [EC:2.3.2.31]
K04725  E3 ubiquitin-protein ligase XIAP [EC:2.3.2.27]
K12797  caspase recruitment domain-containing protein 6
K12792  thyroid receptor-interacting protein 6
K12796  erbb2-interacting protein
K16060  baculoviral IAP repeat-containing protein 2/3
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
K09849  TNF receptor-associated factor 5
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
K12794  caspase recruitment domain-containing protein 9
K11859  tumor necrosis factor, alpha-induced protein 3 [EC:3.4.19.12]
K12648  mitochondrial antiviral-signaling protein
K03174  TNF receptor-associated factor 3
K05410  TANK-binding kinase 1 [EC:2.7.11.10]
K07211  inhibitor of nuclear factor kappa-B kinase subunit epsilon [EC:2.7.11.10]
K12650  TRAF family member-associated NF-kappa-B activator
K05411  interferon regulatory factor 3
K09447  interferon regulatory factor 7
K05414  interferon alpha
K05415  interferon beta
K12653  NLR family member X1
K08645  anthrax lethal toxin endopeptidase [EC:3.4.24.83]
K11030  protective antigen
K20909  anthrax toxin receptor
K12798  NACHT, LRR and PYD domains-containing protein 1
K12799  apoptosis-associated speck-like protein containing a CARD
K01370  caspase 1 [EC:3.4.22.36]
K02161  apoptosis regulator Bcl-2
K04570  Bcl-2-like 1 (apoptosis regulator Bcl-X)
K01363  cathepsin B [EC:3.4.22.1]
K12800  NACHT, LRR and PYD domains-containing protein 3
K03443  pannexin 1
K05220  P2X purinoceptor 7
K04977  transient receptor potential cation channel subfamily M member 2 [EC:3.6.1.13]
K04982  transient receptor potential cation channel subfamily M member 7 [EC:2.7.11.1]
K04971  transient receptor potential cation channel subfamily V member 2
K04612  calcium-sensing receptor
K04622  G protein-coupled receptor family C group 6 member A
K05858  phosphatidylinositol phospholipase C, beta [EC:3.1.4.11]
K04958  inositol 1,4,5-triphosphate receptor type 1
K04959  inositol 1,4,5-triphosphate receptor type 2
K04960  inositol 1,4,5-triphosphate receptor type 3
K05862  voltage-dependent anion channel protein 1
K15040  voltage-dependent anion channel protein 2
K15041  voltage-dependent anion channel protein 3
K20858  calcium uniporter protein, mitochondrial
K14216  2'-5'-oligoadenylate synthetase [EC:2.7.7.84]
K01165  ribonuclease L
K17820  ATP-dependent RNA helicase DHX33 [EC:5.6.2.6]
K21356  mitofusin 1 [EC:3.6.5.-]
K06030  mitofusin 2 [EC:3.6.5.-]
K02861  receptor-interacting serine/threonine-protein kinase 1 [EC:2.7.11.1]
K08847  receptor-interacting serine/threonine-protein kinase 3 [EC:2.7.11.1]
K17065  dynamin 1-like protein [EC:3.6.5.5]
K03462  nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
K21421  NADPH oxidase 2 [EC:1.-.-.-]
K08009  cytochrome b-245, alpha polypeptide
K20910  thioredoxin-interacting protein
K03671  thioredoxin
K20876  serine/threonine-protein kinase Nek7 [EC:2.7.11.34]
K11864  BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
K04079  molecular chaperone HtpG
K12801  caspase recruitment domain-containing protein 8
K15838  G-protein signaling modulator 3
K14139  immunity-related GTPase family M protein [EC:3.6.5.-]
K12802  pyrin domain-containing protein 1
K20911  pyrin domain-containing protein 2
K12803  pyrin
K12804  proline-serine-threonine phosphatase interacting protein 1
K04398  caspase 8 [EC:3.4.22.61]
K02373  FAS-associated death domain protein
K04741  caspase 12 [EC:3.4.22.-]
K12806  caspase recruitment domain-containing protein 16/17/18
K20863  NACHT, LRR and PYD domains-containing protein 6
K20864  NACHT, LRR and PYD domains-containing protein 7
K08598  YopJ protease family
K20865  NACHT, LRR and PYD domains-containing protein 12
K02406  flagellin
K12807  baculoviral IAP repeat-containing protein 1
K12805  NLR family CARD domain-containing protein 4
K06068  novel protein kinase C delta type [EC:2.7.11.13]
K20897  guanylate-binding protein 2
K20898  guanylate-binding protein 5
K12966  absent in melanoma 2
K20914  gamma-interferon-inducible protein 16
K20915  tumor suppressor p53-binding protein 1
K20916  pyrin domain-only protein 3
K04513  Ras homolog gene family, member A
K06071  serine/threonine-protein kinase N1 [EC:2.7.11.13]
K23691  serine/threonine-protein kinase N2 [EC:2.7.11.13]
K06630  14-3-3 protein epsilon
K20899  guanylate-binding protein 1/3/4/7
K04395  caspase 5 [EC:3.4.22.58]
K04394  caspase 4 [EC:3.4.22.57 3.4.22.64]
K20917  gasdermin-D
K05130  interferon receptor 1
K05131  interferon receptor 2
K11217  Janus kinase 1 [EC:2.7.10.2]
K11219  non-receptor tyrosine-protein kinase TYK2 [EC:2.7.10.2]
K11220  signal transducer and activator of transcription 1
K11221  signal transducer and activator of transcription 2
K04693  interferon regulatory factor 9
K10160  toll-like receptor 4
K05842  toll-like receptor adapter molecule 1
K04729  myeloid differentiation primary response protein MyD88
K04733  interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1]
K12654  stimulator of interferon genes protein
Compound
C00002  ATP
C00076  Calcium cation
C00155  L-Homocysteine
C00238  Potassium cation
C00533  Nitric oxide
C01245  D-myo-Inositol 1,4,5-trisphosphate
Reference
  Authors
Vandenabeele P, Bertrand MJ
  Title
The role of the IAP E3 ubiquitin ligases in regulating pattern-recognition receptor signalling.
  Journal
Nat Rev Immunol 12:833-44 (2012)
DOI:10.1038/nri3325
Reference
  Authors
Strober W, Murray PJ, Kitani A, Watanabe T
  Title
Signalling pathways and molecular interactions of NOD1 and NOD2.
  Journal
Nat Rev Immunol 6:9-20 (2006)
DOI:10.1038/nri1747
Reference
  Authors
Estornes Y, Bertrand MJ
  Title
IAPs, regulators of innate immunity and inflammation.
  Journal
Semin Cell Dev Biol 39:106-14 (2015)
DOI:10.1016/j.semcdb.2014.03.035
Reference
  Authors
Jakopin Z
  Title
Nucleotide-binding oligomerization domain (NOD) inhibitors: a rational approach toward inhibition of NOD signaling pathway.
  Journal
J Med Chem 57:6897-918 (2014)
DOI:10.1021/jm401841p
Reference
  Authors
Caruso R, Warner N, Inohara N, Nunez G
  Title
NOD1 and NOD2: signaling, host defense, and inflammatory disease.
  Journal
Immunity 41:898-908 (2014)
DOI:10.1016/j.immuni.2014.12.010
Reference
  Authors
Murray PJ
  Title
Beyond peptidoglycan for Nod2.
  Journal
Nat Immunol 10:1053-4 (2009)
DOI:10.1038/ni1009-1053
Reference
  Authors
Lecat A, Piette J, Legrand-Poels S
  Title
The protein Nod2: an innate receptor more complex than previously assumed.
  Journal
Biochem Pharmacol 80:2021-31 (2010)
DOI:10.1016/j.bcp.2010.07.016
Reference
  Authors
Man SM, Kanneganti TD
  Title
Converging roles of caspases in inflammasome activation, cell death and innate immunity.
  Journal
Nat Rev Immunol 16:7-21 (2016)
DOI:10.1038/nri.2015.7
Reference
  Authors
Broz P, Dixit VM
  Title
Inflammasomes: mechanism of assembly, regulation and signalling.
  Journal
Nat Rev Immunol 16:407-20 (2016)
DOI:10.1038/nri.2016.58
Reference
  Authors
Man SM, Kanneganti TD
  Title
Regulation of inflammasome activation.
  Journal
Immunol Rev 265:6-21 (2015)
DOI:10.1111/imr.12296
Reference
  Authors
Jo EK, Kim JK, Shin DM, Sasakawa C
  Title
Molecular mechanisms regulating NLRP3 inflammasome activation.
  Journal
Cell Mol Immunol 13:148-59 (2016)
DOI:10.1038/cmi.2015.95
Reference
  Authors
Broz P, Monack DM
  Title
Newly described pattern recognition receptors team up against intracellular pathogens.
  Journal
Nat Rev Immunol 13:551-65 (2013)
DOI:10.1038/nri3479
Reference
  Authors
Rathinam VA, Vanaja SK, Fitzgerald KA
  Title
Regulation of inflammasome signaling.
  Journal
Nat Immunol 13:333-42 (2012)
DOI:10.1038/ni.2237
Reference
  Authors
Sutterwala FS, Haasken S, Cassel SL
  Title
Mechanism of NLRP3 inflammasome activation.
  Journal
Ann N Y Acad Sci 1319:82-95 (2014)
DOI:10.1111/nyas.12458
Reference
  Authors
Latz E, Xiao TS, Stutz A
  Title
Activation and regulation of the inflammasomes.
  Journal
Nat Rev Immunol 13:397-411 (2013)
DOI:10.1038/nri3452
Reference
  Authors
Blander JM
  Title
A long-awaited merger of the pathways mediating host defence and programmed cell death.
  Journal
Nat Rev Immunol 14:601-18 (2014)
DOI:10.1038/nri3720
Reference
  Authors
von Moltke J, Ayres JS, Kofoed EM, Chavarria-Smith J, Vance RE
  Title
Recognition of bacteria by inflammasomes.
  Journal
Annu Rev Immunol 31:73-106 (2013)
DOI:10.1146/annurev-immunol-032712-095944
Reference
  Authors
Abais JM, Xia M, Zhang Y, Boini KM, Li PL
  Title
Redox regulation of NLRP3 inflammasomes: ROS as trigger or effector?
  Journal
Antioxid Redox Signal 22:1111-29 (2015)
DOI:10.1089/ars.2014.5994
Reference
  Authors
Storek KM, Monack DM
  Title
Bacterial recognition pathways that lead to inflammasome activation.
  Journal
Immunol Rev 265:112-29 (2015)
DOI:10.1111/imr.12289
Reference
  Authors
Hu H, Sun SC
  Title
Ubiquitin signaling in immune responses.
  Journal
Cell Res 26:457-83 (2016)
DOI:10.1038/cr.2016.40
Reference
  Authors
Guo H, Callaway JB, Ting JP
  Title
Inflammasomes: mechanism of action, role in disease, and therapeutics.
  Journal
Nat Med 21:677-87 (2015)
DOI:10.1038/nm.3893
Reference
  Authors
Man SM, Kanneganti TD
  Title
Gasdermin D: the long-awaited executioner of pyroptosis.
  Journal
Cell Res 25:1183-4 (2015)
DOI:10.1038/cr.2015.124
Reference
  Authors
Rathinam VA, Vanaja SK, Waggoner L, Sokolovska A, Becker C, Stuart LM, Leong JM, Fitzgerald KA
  Title
TRIF licenses caspase-11-dependent NLRP3 inflammasome activation by gram-negative bacteria.
  Journal
Cell 150:606-19 (2012)
DOI:10.1016/j.cell.2012.07.007
Reference
  Authors
Kerur N, Veettil MV, Sharma-Walia N, Bottero V, Sadagopan S, Otageri P, Chandran B
  Title
IFI16 acts as a nuclear pathogen sensor to induce the inflammasome in response to Kaposi Sarcoma-associated herpesvirus infection.
  Journal
Cell Host Microbe 9:363-75 (2011)
DOI:10.1016/j.chom.2011.04.008
Reference
  Authors
Heilig R, Broz P
  Title
Function and mechanism of the pyrin inflammasome.
  Journal
Eur J Immunol 48:230-238 (2018)
DOI:10.1002/eji.201746947
Reference
  Authors
Chakrabarti A, Banerjee S, Franchi L, Loo YM, Gale M Jr, Nunez G, Silverman RH
  Title
RNase L activates the NLRP3 inflammasome during viral infections.
  Journal
Cell Host Microbe 17:466-77 (2015)
DOI:10.1016/j.chom.2015.02.010
Related
pathway
ko00550  Peptidoglycan biosynthesis
ko03070  Bacterial secretion system
ko04010  MAPK signaling pathway
ko04064  NF-kappa B signaling pathway
ko04140  Autophagy - animal
ko04620  Toll-like receptor signaling pathway
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