KEGG   PATHWAY: sjo04512
Entry
sjo04512                    Pathway                                
Name
ECM-receptor interaction - Scomber japonicus (chub mackerel)
Description
The extracellular matrix (ECM) consists of a complex mixture of structural and functional macromolecules and serves an important role in tissue and organ morphogenesis and in the maintenance of cell and tissue structure and function. Specific interactions between cells and the ECM are mediated by transmembrane molecules, mainly integrins and perhaps also proteoglycans, CD36, or other cell-surface-associated components. These interactions lead to a direct or indirect control of cellular activities such as adhesion, migration, differentiation, proliferation, and apoptosis. In addition, integrins function as mechanoreceptors and provide a force-transmitting physical link between the ECM and the cytoskeleton. Integrins are a family of glycosylated, heterodimeric transmembrane adhesion receptors that consist of noncovalently bound alpha- and beta-subunits.
Class
Environmental Information Processing; Signaling molecules and interaction
Pathway map
sjo04512  ECM-receptor interaction
sjo04512

Other DBs
GO: 0005201
Organism
Scomber japonicus (chub mackerel) [GN:sjo]
Gene
128374490  col1a2; collagen alpha-2(I) chain isoform X1 [KO:K06236]
128380888  col1a1b; collagen, type I, alpha 1b [KO:K06236]
128378365  col1a1a; collagen, type I, alpha 1a isoform X1 [KO:K06236]
128354940  col2a1b; collagen, type II, alpha 1b [KO:K19719]
128356810  col2a1a; collagen, type II, alpha 1a [KO:K19719]
128368278  col4a1; collagen alpha-1(IV) chain [KO:K06237]
128369634  collagen alpha-4(IV) chain-like [KO:K06237]
128369635  collagen alpha-1(IV) chain-like [KO:K06237]
128360086  col4a3; collagen alpha-5(IV) chain [KO:K06237]
128360087  col4a4; collagen alpha-4(IV) chain [KO:K06237]
128383553  col4a6; collagen alpha-6(IV) chain [KO:K06237]
128384230  col4a5; collagen alpha-5(IV) chain [KO:K06237]
128367652  col4a2; collagen alpha-2(IV) chain [KO:K06237]
128368391  collagen alpha-2(VI) chain-like [KO:K06238]
128368923  col6a2; collagen alpha-2(VI) chain [KO:K06238]
128369401  col6a1; collagen alpha-1(VI) chain [KO:K06238]
128366623  col6a4a; collagen alpha-6(VI) chain [KO:K06238]
128366935  collagen alpha-6(VI) chain-like [KO:K06238]
128366936  collagen alpha-6(VI) chain-like [KO:K06238]
128367754  collagen alpha-3(VI) chain [KO:K06238]
128373936  col9a2; collagen alpha-2(IX) chain [KO:K08131]
128373949  collagen alpha-1(IX) chain-like [KO:K08131]
128357965  col9a3; collagen alpha-3(IX) chain [KO:K08131]
128381025  col9a1a; collagen, type IX, alpha 1a [KO:K08131]
128372796  col9a1b; collagen, type IX, alpha 1b [KO:K08131]
128376864  lama2; laminin subunit alpha-2 [KO:K05637]
128382744  lama1; laminin subunit alpha-1 [KO:K05637]
128357726  lama5; laminin subunit alpha-5 [KO:K06240]
128369650  laminin subunit alpha-3-like [KO:K06240]
128377296  lama4; laminin subunit alpha-4 [KO:K06241]
128353109  lamb1b; laminin subunit beta-1b [KO:K05636]
128358426  lamb1a; laminin subunit beta-1a [KO:K05636]
128356815  lamb2; laminin subunit beta-2 [KO:K06243]
128357098  lamb2l; laminin subunit beta-2 [KO:K06243]
128355223  lamb3; laminin subunit beta-3 [KO:K06244]
128358896  lamb4; laminin subunit beta-4 [KO:K06245]
128368625  lamc1; laminin subunit gamma-1 [KO:K05635]
128369832  lamc2; laminin subunit gamma-2 [KO:K06246]
128380232  lamc3; laminin subunit gamma-3 [KO:K06247]
128381638  chad; chondroadherin [KO:K06248]
128358846  reln; reelin [KO:K06249] [EC:3.4.21.-]
128375196  thrombospondin-1-like [KO:K16857]
128376979  thbs1b; thrombospondin-1 [KO:K16857]
128379766  thbs4b; thrombospondin-4-B [KO:K04659]
128380930  thrombospondin-2-like [KO:K04659]
128365372  thbs4a; thrombospondin-4a [KO:K04659]
128372640  thbs2a; thrombospondin-2 [KO:K04659]
128361394  comp; cartilage oligomeric matrix protein [KO:K04659]
128367124  thbs3a; thrombospondin-3a [KO:K04659]
128367596  fn1a; fibronectin 1a [KO:K05717]
128362194  fn1b; fibronectin 1b isoform X1 [KO:K05717]
128371126  vtnb; vitronectin b [KO:K06251]
128360253  vtna; vitronectin a [KO:K06251]
128380219  tnca; tenascin isoform X1 [KO:K06252]
128374604  tenascin-X [KO:K06252]
128364450  tncb; LOW QUALITY PROTEIN: tenascin [KO:K06252]
128369641  tnn; tenascin-N [KO:K06252]
128369642  tnr; tenascin-R [KO:K06252]
128366814  tenascin-like [KO:K06252]
128371238  npnta; nephronectin a isoform X1 [KO:K06824]
128383652  nephronectin-like [KO:K06824]
128364837  fras1; LOW QUALITY PROTEIN: extracellular matrix protein FRAS1 [KO:K23379]
128370919  FRAS1-related extracellular matrix protein 2-like [KO:K23380]
128360115  frem2b; FRAS1-related extracellular matrix protein 2b [KO:K23380]
128384290  frem1a; FRAS1-related extracellular matrix protein 1a [KO:K23380]
128362041  frem1b; FRAS1-related extracellular matrix protein 1b [KO:K23380]
128359425  vwf; von Willebrand factor [KO:K03900]
128357525  agrn; LOW QUALITY PROTEIN: agrin [KO:K06254]
128357825  hspg2; basement membrane-specific heparan sulfate proteoglycan core protein [KO:K06255]
128380549  itga1; integrin alpha-1 [KO:K06480]
128364894  integrin alpha-2-like [KO:K06481]
128379404  itga2b; LOW QUALITY PROTEIN: integrin alpha-IIb [KO:K06476]
128381274  itga3b; integrin alpha-3b [KO:K06482]
128379406  integrin alpha-3-like [KO:K06482]
128367516  itga4; integrin alpha-4 [KO:K06483]
128354979  integrin alpha-5-like [KO:K06484]
128357095  itga5; integrin alpha-5 [KO:K06484]
128362810  integrin alpha-6-like [KO:K06485]
128368587  integrin alpha-6-like [KO:K06485]
128367521  itga6a; integrin alpha-6 [KO:K06485]
128355075  itga7; integrin alpha-7 isoform X1 [KO:K06583]
128366011  itga8; integrin alpha-8 isoform X1 [KO:K06584]
128372497  itga9; integrin alpha-9 [KO:K06585]
128366062  itga10; integrin alpha-10 [KO:K06586]
128359028  itga11b; integrin alpha-11 [KO:K06587]
128356095  itga11a; integrin alpha-11a [KO:K06587]
128367491  itgav; integrin alpha-V [KO:K06487]
128382657  integrin beta-1-like [KO:K05719]
128382851  integrin beta-1-A-like [KO:K05719]
128380881  integrin beta-3-like [KO:K06493]
128378418  itgb3a; integrin beta-3a [KO:K06493]
128381965  itgb4; integrin beta-4 [KO:K06525]
128368402  itgb5; integrin beta-5 [KO:K06588]
128383578  itgb6; integrin beta-6 [KO:K06589]
128373912  itgb8; integrin beta-8 [KO:K06591]
128359448  cd44b; CD44 antigen [KO:K06256]
128355605  sdc4; syndecan-4 isoform X1 [KO:K16338]
128374040  synaptic vesicle glycoprotein 2A-like [KO:K06258]
128358511  sv2; synaptic vesicle glycoprotein 2B [KO:K06258]
128380244  synaptic vesicle glycoprotein 2C-like isoform X1 [KO:K06258]
128364651  sv2ca; synaptic vesicle glycoprotein 2Ca isoform X1 [KO:K06258]
128359532  synaptic vesicle glycoprotein 2B-like [KO:K06258]
128366109  sv2a; synaptic vesicle glycoprotein 2A [KO:K06258]
128356222  sv2ba; synaptic vesicle glycoprotein 2Ba [KO:K06258]
128353200  cd36; platelet glycoprotein 4 [KO:K06259]
128362232  platelet glycoprotein V [KO:K06260]
128365129  gp1bb; platelet glycoprotein Ib beta chain [KO:K06262]
128357978  gp9; glycoprotein IX (platelet) [KO:K06263]
128354699  dystroglycan 1-like [KO:K06265]
128356941  dystroglycan 1-like [KO:K06265]
128362894  hmmr; hyaluronan mediated motility receptor [KO:K06267]
Compound
G10505  Hyaluronic acid
Reference
  Authors
van der Flier A, Sonnenberg A.
  Title
Function and interactions of integrins.
  Journal
Cell Tissue Res 305:285-98 (2001)
DOI:10.1007/s004410100417
Reference
  Authors
Reddy KV, Mangale SS.
  Title
Integrin receptors: the dynamic modulators of endometrial function.
  Journal
Tissue Cell 35:260-73 (2003)
DOI:10.1016/S0040-8166(03)00039-9
Reference
  Authors
Milner R, Campbell IL.
  Title
The integrin family of cell adhesion molecules has multiple functions within the CNS.
  Journal
J Neurosci Res 69:286-91 (2002)
DOI:10.1002/jnr.10321
Reference
  Authors
Cichy J, Pure E.
  Title
The liberation of CD44.
  Journal
J Cell Biol 161:839-43 (2003)
DOI:10.1083/jcb.200302098
Reference
PMID:7698997
  Authors
Elenius K, Jalkanen M.
  Title
Function of the syndecans--a family of cell surface proteoglycans.
  Journal
J Cell Sci 107 ( Pt 11):2975-82 (1994)
Reference
  Authors
Son YJ, Scranton TW, Sunderland WJ, Baek SJ, Miner JH, Sanes JR, Carlson SS.
  Title
The synaptic vesicle protein SV2 is complexed with an alpha5-containing laminin on the nerve terminal surface.
  Journal
J Biol Chem 275:451-60 (2000)
DOI:10.1074/jbc.275.1.451
Reference
  Authors
Sid B, Sartelet H, Bellon G, El Btaouri H, Rath G, Delorme N, Haye B, Martiny L.
  Title
Thrombospondin 1: a multifunctional protein implicated in the regulation of tumor growth.
  Journal
Crit Rev Oncol Hematol 49:245-58 (2004)
DOI:10.1016/j.critrevonc.2003.09.009
Reference
  Authors
Canobbio I, Balduini C, Torti M.
  Title
Signalling through the platelet glycoprotein Ib-V-IX complex.
  Journal
Cell Signal 16:1329-44 (2004)
DOI:10.1016/j.cellsig.2004.05.008
Reference
  Authors
Nieswandt B, Brakebusch C, Bergmeier W, Schulte V, Bouvard D, Mokhtari-Nejad R, Lindhout T, Heemskerk JW, Zirngibl H, Fassler R.
  Title
Glycoprotein VI but not alpha2beta1 integrin is essential for platelet interaction with collagen.
  Journal
EMBO J 20:2120-30 (2001)
DOI:10.1093/emboj/20.9.2120
Reference
  Authors
Martin PT.
  Title
Dystroglycan glycosylation and its role in matrix binding in skeletal muscle.
  Journal
Glycobiology 13:55R-66R (2003)
DOI:10.1093/glycob/cwg076
Reference
  Authors
Toole BP.
  Title
Hyaluronan: from extracellular glue to pericellular cue.
  Journal
Nat Rev Cancer 4:528-39 (2004)
DOI:10.1038/nrc1391
Reference
  Authors
Bosman FT, Stamenkovic I.
  Title
Functional structure and composition of the extracellular matrix.
  Journal
J Pathol 200:423-8 (2003)
DOI:10.1002/path.1437
Reference
  Authors
van der Ven AT, Vivante A, Hildebrandt F
  Title
Novel Insights into the Pathogenesis of Monogenic Congenital Anomalies of the Kidney and Urinary Tract.
  Journal
J Am Soc Nephrol 29:36-50 (2018)
DOI:10.1681/ASN.2017050561
Related
pathway
sjo04510  Focal adhesion
KO pathway
ko04512   
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