Entry
Name
Lysosome biogenesis - Mastomys coucha (southern multimammate mouse)
Description
Lysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than 40 hydrolases in an acidic environment (pH of about 5). After synthesis in the ER, lysosomal enzymes are decorated with mannose-6-phosphate residues, which are recognized by mannose-6-phosphate receptors in the trans-Golgi network. They are packaged into clathrin-coated vesicles and are transported to late endosomes. Substances for digestion are acquired by the lysosomes via a series of processes including endocytosis, phagocytosis, and autophagy.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Other DBs
Organism
Mastomys coucha (southern multimammate mouse) [GN:
mcoc ]
Gene
116068106 Tmem175; endosomal/lysosomal potassium channel TMEM175 isoform X1 [KO:K24915 ]
116068360 Vps29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
116068397 Vps33a; vacuolar protein sorting-associated protein 33A [KO:K20182 ]
116068463 Slc15a4; solute carrier family 15 member 4 isoform X1 [KO:K14638 ]
116068633 Lamtor4; ragulator complex protein LAMTOR4 isoform X1 [KO:K20399 ]
116068931 Lamp1; lysosome-associated membrane glycoprotein 1 isoform X1 [KO:K06528 ]
116069414 Atp6v1b2; V-type proton ATPase subunit B, brain isoform [KO:K02147 ]
116069760 Vps35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
116070688 Bloc1s4; biogenesis of lysosome-related organelles complex 1 subunit 4 [KO:K08366 ]
116072341 Slc36a4; proton-coupled amino acid transporter 4 isoform X1 [KO:K14209 ]
116072784 Vps11; vacuolar protein sorting-associated protein 11 homolog isoform X1 [KO:K20179 ]
116073430 Ap1m2; LOW QUALITY PROTEIN: AP-1 complex subunit mu-2 [KO:K12393 ]
116073464 Vps26b; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
116073848 Vps13c; vacuolar protein sorting-associated protein 13C isoform X1 [KO:K19525 ]
116074224 Vamp7; vesicle-associated membrane protein 7 isoform X1 [KO:K08515 ]
116074353 Vps26a; vacuolar protein sorting-associated protein 26A isoform X1 [KO:K18466 ]
116074946 Ostm1; osteopetrosis-associated transmembrane protein 1 isoform X1 [KO:K23863 ]
116075662 Gga1; ADP-ribosylation factor-binding protein GGA1 isoform X1 [KO:K12404 ]
116075767 Gnptab; N-acetylglucosamine-1-phosphotransferase subunits alpha/beta isoform X1 [KO:K08239 ] [EC:2.7.8.17 ]
116075886 Bloc1s1; biogenesis of lysosome-related organelles complex 1 subunit 1 [KO:K20185 ]
116076679 Plekhm1; pleckstrin homology domain-containing family M member 1 [KO:K23282 ]
116076821 Gnptg; N-acetylglucosamine-1-phosphotransferase subunit gamma isoform X1 [KO:K10087 ]
116076834 Igf2r; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
116076896 Abca5; ATP-binding cassette sub-family A member 5 isoform X1 [KO:K05648 ]
116077533 Telo2; telomere length regulation protein TEL2 homolog isoform X1 [KO:K11137 ]
116077943 Atp6v0e1; V-type proton ATPase subunit e 1 isoform X1 [KO:K02153 ]
116078084 Osbpl7; oxysterol-binding protein-related protein 7 isoform X1 [KO:K20463 ]
116078194 Atp6v0c; V-type proton ATPase 16 kDa proteolipid subunit [KO:K02155 ]
116078319 Slc36a3; proton-coupled amino acid transporter 3 isoform X1 [KO:K14209 ]
116078351 Lamp2; lysosome-associated membrane glycoprotein 2 isoform X1 [KO:K06528 ]
116079123 Gga3; ADP-ribosylation factor-binding protein GGA3 isoform X1 [KO:K12404 ]
116079228 Atp6v0a1; V-type proton ATPase 116 kDa subunit a isoform X1 [KO:K02154 ]
116079697 Zfyve26; zinc finger FYVE domain-containing protein 26 isoform X1 [KO:K19027 ]
116079784 Slc11a2; natural resistance-associated macrophage protein 2 isoform X1 [KO:K21398 ]
116080017 Laptm4a; lysosomal-associated transmembrane protein 4A [KO:K12387 ]
116080803 Atp6v1c2; V-type proton ATPase subunit C 2 isoform X1 [KO:K02148 ]
116081595 Deptor; DEP domain-containing mTOR-interacting protein [KO:K20402 ]
116081794 Laptm4b; lysosomal-associated transmembrane protein 4B [KO:K12387 ]
116081909 Bloc1s5; biogenesis of lysosome-related organelles complex 1 subunit 5 isoform X1 [KO:K20187 ]
116082714 Vps41; vacuolar protein sorting-associated protein 41 homolog [KO:K20184 ]
116083091 Slc38a9; sodium-coupled neutral amino acid transporter 9 isoform X1 [KO:K14995 ]
116085237 Litaf; lipopolysaccharide-induced tumor necrosis factor-alpha factor [KO:K19363 ]
116086849 Npc1; LOW QUALITY PROTEIN: NPC intracellular cholesterol transporter 1 [KO:K12385 ]
116086854 Osbpl1a; oxysterol-binding protein-related protein 1 isoform X1 [KO:K20174 ]
116088567 Slc11a1; natural resistance-associated macrophage protein 1 [KO:K12347 ]
116089818 Abca2; ATP-binding cassette sub-family A member 2 isoform X1 [KO:K05642 ]
116089878 Slc2a6; solute carrier family 2, facilitated glucose transporter member 6 isoform X1 [KO:K08144 ]
116090344 Osbpl6; oxysterol-binding protein-related protein 6 isoform X1 [KO:K20463 ]
116090719 Vps18; vacuolar protein sorting-associated protein 18 homolog [KO:K20181 ]
116090832 Bloc1s6; biogenesis of lysosome-related organelles complex 1 subunit 6 [KO:K20188 ]
116090929 Vps16; vacuolar protein sorting-associated protein 16 homolog isoform X1 [KO:K20180 ]
116095131 Mfsd8; major facilitator superfamily domain-containing protein 8 isoform X1 [KO:K12307 ]
116096509 Atp6v0b; V-type proton ATPase 21 kDa proteolipid subunit isoform X1 [KO:K03661 ]
116098742 Atp6v0a4; V-type proton ATPase 116 kDa subunit a isoform X1 [KO:K02154 ]
116098857 Atp6v0e2; V-type proton ATPase subunit e 2 isoform X1 [KO:K02153 ]
116098893 Osbpl3; oxysterol-binding protein-related protein 3 isoform X1 [KO:K20463 ]
116099319 Mitf; microphthalmia-associated transcription factor isoform X1 [KO:K09455 ]
116099943 Atp6v1b1; V-type proton ATPase subunit B, kidney isoform [KO:K02147 ]
116101756 Bloc1s3; biogenesis of lysosome-related organelles complex 1 subunit 3 isoform X1 [KO:K20186 ]
116103300 Tcirg1; V-type proton ATPase 116 kDa subunit a isoform X1 [KO:K02154 ]
116103567 Slc15a3; solute carrier family 15 member 3 isoform X1 [KO:K14638 ]
116103626 Vps13a; vacuolar protein sorting-associated protein 13A isoform X1 [KO:K19525 ]
116103886 Bloc1s2; biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X1 [KO:K16750 ]
Compound
Reference
Authors
Eskelinen EL, Tanaka Y, Saftig P
Title
At the acidic edge: emerging functions for lysosomal membrane proteins.
Journal
Reference
Authors
Neufeld EF
Title
Lysosomal storage diseases.
Journal
Reference
Authors
von Figura K, Hasilik A
Title
Lysosomal enzymes and their receptors.
Journal
Reference
Authors
Janvier K, Bonifacino JS
Title
Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins.
Journal
Reference
Authors
Vergarajauregui S, Puertollano R
Title
Mucolipidosis type IV: the importance of functional lysosomes for efficient autophagy.
Journal
Reference
Authors
Jaskolka MC, Winkley SR, Kane PM
Title
RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification.
Journal
Reference
Authors
Majdoul S, Compton AA
Title
Lessons in self-defence: inhibition of virus entry by intrinsic immunity.
Journal
Reference
Authors
Saftig P, Klumperman J
Title
Lysosome biogenesis and lysosomal membrane proteins: trafficking meets function.
Journal
Reference
Authors
Savini M, Zhao Q, Wang MC
Title
Lysosomes: Signaling Hubs for Metabolic Sensing and Longevity.
Journal
Reference
Authors
Meyer-Schwesinger C
Title
Lysosome function in glomerular health and disease.
Journal
Reference
Authors
Allemailem KS, Almatroudi A, Alrumaihi F, Almatroodi SA, Alkurbi MO, Basfar GT, Rahmani AH, Khan AA
Title
Novel Approaches of Dysregulating Lysosome Functions in Cancer Cells by Specific Drugs and Its Nanoformulations: A Smart Approach of Modern Therapeutics.
Journal
Reference
Authors
Zhang W, Yang X, Li Y, Yu L, Zhang B, Zhang J, Cho WJ, Venkatarangan V, Chen L, Burugula BB, Bui S, Wang Y, Duan C, Kitzman JO, Li M
Title
GCAF(TMEM251) regulates lysosome biogenesis by activating the mannose-6-phosphate pathway.
Journal
Reference
Authors
Liu Q, Wang W, Xu L, Zhang Q, Wang H
Title
The host mannose-6-phosphate pathway and viral infection.
Journal
Reference
Authors
He Y, Fan Y, Ahmadpoor X, Wang Y, Li ZA, Zhu W, Lin H
Title
Targeting lysosomal quality control as a therapeutic strategy against aging and diseases.
Journal
Reference
Authors
Radulovic M, Yang C, Stenmark H
Title
Lysosomal membrane homeostasis and its importance in physiology and disease.
Journal
Reference
Authors
Watson ET, Wegeng WR, Aravani S, Ernst AM, von Blume J
Title
Mechanistic insights into cargo sorting and export from the Golgi apparatus.
Journal
Related pathway
mcoc04130 SNARE interactions in vesicular transport
mcoc04620 Toll-like receptor signaling pathway
KO pathway