KEGG   PATHWAY: mfot04064
Entry
mfot04064                   Pathway                                
Name
NF-kappa B signaling pathway - Alexandromys fortis (reed vole)
Description
Nuclear factor-kappa B (NF-kappa B) is the generic name of a family of transcription factors that function as dimers and regulate genes involved in immunity, inflammation and cell survival. There are several pathways leading to NF-kappa B-activation. The canonical pathway is induced by tumour necrosis factor-alpha (TNF-alpha), interleukin-1 (IL-1) or byproducts of bacterial and viral infections. This pathway relies on IKK- mediated IkappaB-alpha phosphorylation on Ser32 and 36, leading to its degradation, which allows the p50/p65 NF-kappa B dimer to enter the nucleus and activate gene transcription. Atypical pathways are IKK-independent and rely on phosphorylation of IkappaB-alpha on Tyr42 or on Ser residues in IkappaB-alpha PEST domain. The non-canonical pathway is triggered by particular members of the TNFR superfamily, such as lymphotoxin-beta (LT-beta) or BAFF. It involves NIK and IKK-alpha-mediated p100 phosphorylation and processing to p52, resulting in nuclear translocation of p52/RelB heterodimers.
Class
Environmental Information Processing; Signal transduction
Pathway map
mfot04064  NF-kappa B signaling pathway
mfot04064

Organism
Alexandromys fortis (reed vole) [GN:mfot]
Gene
126486568  [KO:K04725] [EC:2.3.2.27]
126486910  [KO:K04728] [EC:2.7.11.1]
126487047  [KO:K05480]
126487103  [KO:K02161]
126487114  [KO:K05147]
126487157  [KO:K08601] [EC:3.4.19.12]
126487329  [KO:K05403]
126487876  [KO:K08601] [EC:3.4.19.12]
126488254  [KO:K07362]
126489080  [KO:K10577]
126489323  [KO:K16065] [EC:2.3.2.27]
126489353  [KO:K04402]
126490221  [KO:K04730] [EC:2.7.11.1]
126490256  [KO:K07210]
126490323  [KO:K05842]
126490373  [KO:K05477]
126490552  [KO:K06490]
126490840  [KO:K05163]
126490944  [KO:K27356]
126490949  [KO:K09253]
126491396  [KO:K01348] [EC:3.4.21.73]
126492099  [KO:K12793]
126492812  [KO:K04733] [EC:2.7.11.1]
126493354  [KO:K04402]
126493390  [KO:K04391]
126493562  [KO:K07370] [EC:2.7.10.2]
126493857  [KO:K10784]
126493972  [KO:K03097] [EC:2.7.11.1]
126494870  [KO:K03115]
126494876  [KO:K03157]
126494877  [KO:K03156]
126494878  [KO:K05468]
126495784  [KO:K12964]
126496436  [KO:K04729]
126496850  [KO:K04519]
126496981  [KO:K04386]
126497023  [KO:K07360] [EC:2.7.10.2]
126498327  [KO:K05476]
126498562  [KO:K04735]
126498818  [KO:K10130]
126499590  [KO:K04734]
126500297  [KO:K10652] [EC:2.3.2.27]
126500375  [KO:K20913]
126501081  [KO:K04729]
126501405  [KO:K05400]
126501507  [KO:K23324]
126501520  [KO:K02861] [EC:2.7.11.1]
126502100  [KO:K03097] [EC:2.7.11.1]
126502132  [KO:K24070]
126502351  [KO:K05162]
126502354  [KO:K19662] [EC:2.7.11.13]
126502367  [KO:K02580]
126502763  [KO:K03097] [EC:2.7.11.1]
126502853  [KO:K05855] [EC:2.7.10.2]
126502907  [KO:K03171]
126502936  [KO:K05859] [EC:3.1.4.11]
126503041  [KO:K04402]
126503627  [KO:K12646] [EC:5.6.2.6]
126503643  [KO:K04427] [EC:2.7.11.25]
126504083  [KO:K04467] [EC:2.7.11.10]
126504411  [KO:K07209] [EC:2.7.11.10]
126504640  [KO:K03175] [EC:2.3.2.27]
126504801  [KO:K24070]
126505284  [KO:K04469]
126505400  [KO:K09849]
126505459  [KO:K10031]
126505492  [KO:K07371]
126505536  [KO:K16072]
126505987  [KO:K05409]
126506198  [KO:K06527]
126506338  [KO:K05505]
126506591  [KO:K05505]
126506592  [KO:K05505]
126506776  [KO:K18052] [EC:2.7.11.13]
126506891  [KO:K04570]
126506909  [KO:K03097] [EC:2.7.11.1]
126506989  [KO:K05399]
126506998  [KO:K01116] [EC:3.1.4.11]
126507111  [KO:K03160]
126507357  [KO:K05856] [EC:2.7.10.2]
126507954  [KO:K10160]
126509072  [KO:K03174]
126509272  [KO:K03173] [EC:2.3.2.27]
126509826  [KO:K16062]
126509854  [KO:K05512]
126510276  [KO:K10652] [EC:2.3.2.27]
126510438  [KO:K04466] [EC:2.7.11.25]
126510660  [KO:K02162]
126511092  [KO:K07369] [EC:3.4.22.-]
126511840  [KO:K04724]
126511950  [KO:K11859] [EC:3.4.19.12]
126512121  [KO:K03161]
126512408  [KO:K07368]
126513299  [KO:K04404]
126513423  [KO:K03172]
126513679  [KO:K16060]
126513689  [KO:K16060]
126514187  [KO:K11987] [EC:1.14.99.1]
126514370  [KO:K07367]
126514827  [KO:K03158]
126514853  [KO:K03159]
126515585  [KO:K05854] [EC:2.7.10.2]
126515732  [KO:K04403]
126515795  [KO:K20912]
126515804  [KO:K05151]
Compound
C00076  Calcium cation
C00165  Diacylglycerol
C01245  D-myo-Inositol 1,4,5-trisphosphate
Reference
  Authors
Oeckinghaus A, Hayden MS, Ghosh S
  Title
Crosstalk in NF-kappaB signaling pathways.
  Journal
Nat Immunol 12:695-708 (2011)
DOI:10.1038/ni.2065
Reference
  Authors
Gloire G, Piette J
  Title
Redox regulation of nuclear post-translational modifications during NF-kappaB activation.
  Journal
Antioxid Redox Signal 11:2209-22 (2009)
DOI:10.1089/ARS.2009.2463
Reference
  Authors
Perkins ND
  Title
Integrating cell-signalling pathways with NF-kappaB and IKK function.
  Journal
Nat Rev Mol Cell Biol 8:49-62 (2007)
DOI:10.1038/nrm2083
Reference
  Authors
Lindstrom TM, Bennett PR
  Title
The role of nuclear factor kappa B in human labour.
  Journal
Reproduction 130:569-81 (2005)
DOI:10.1530/rep.1.00197
Reference
  Authors
Razani B, Reichardt AD, Cheng G
  Title
Non-canonical NF-kappaB signaling activation and regulation: principles and perspectives.
  Journal
Immunol Rev 244:44-54 (2011)
DOI:10.1111/j.1600-065X.2011.01059.x
Reference
  Authors
Sun SC
  Title
Non-canonical NF-kappaB signaling pathway.
  Journal
Cell Res 21:71-85 (2011)
DOI:10.1038/cr.2010.177
Reference
  Authors
Neumann M, Naumann M
  Title
Beyond IkappaBs: alternative regulation of NF-kappaB activity.
  Journal
FASEB J 21:2642-54 (2007)
DOI:10.1096/fj.06-7615rev
Reference
  Authors
Verhelst K, Carpentier I, Beyaert R
  Title
Regulation of TNF-induced NF-kappaB activation by different cytoplasmic ubiquitination events.
  Journal
Cytokine Growth Factor Rev 22:277-86 (2011)
DOI:10.1016/j.cytogfr.2011.11.002
Reference
  Authors
Rickert RC, Jellusova J, Miletic AV
  Title
Signaling by the tumor necrosis factor receptor superfamily in B-cell biology and disease.
  Journal
Immunol Rev 244:115-33 (2011)
DOI:10.1111/j.1600-065X.2011.01067.x
Reference
  Authors
Naude PJ, den Boer JA, Luiten PG, Eisel UL
  Title
Tumor necrosis factor receptor cross-talk.
  Journal
FEBS J 278:888-98 (2011)
DOI:10.1111/j.1742-4658.2011.08017.x
Reference
  Authors
Grivennikov SI, Kuprash DV, Liu ZG, Nedospasov SA
  Title
Intracellular signals and events activated by cytokines of the tumor necrosis factor superfamily: From simple paradigms to complex mechanisms.
  Journal
Int Rev Cytol 252:129-61 (2006)
DOI:10.1016/S0074-7696(06)52002-9
Reference
  Authors
Wada T, Nakashima T, Hiroshi N, Penninger JM
  Title
RANKL-RANK signaling in osteoclastogenesis and bone disease.
  Journal
Trends Mol Med 12:17-25 (2006)
DOI:10.1016/j.molmed.2005.11.007
Reference
  Authors
Schulze-Luehrmann J, Ghosh S
  Title
Antigen-receptor signaling to nuclear factor kappa B.
  Journal
Immunity 25:701-15 (2006)
DOI:10.1016/j.immuni.2006.10.010
Reference
  Authors
Weil R, Israel A
  Title
T-cell-receptor- and B-cell-receptor-mediated activation of NF-kappaB in lymphocytes.
  Journal
Curr Opin Immunol 16:374-81 (2004)
DOI:10.1016/j.coi.2004.03.003
Reference
  Authors
Siebenlist U, Brown K, Claudio E
  Title
Control of lymphocyte development by nuclear factor-kappaB.
  Journal
Nat Rev Immunol 5:435-45 (2005)
DOI:10.1038/nri1629
Reference
  Authors
Lucas PC, McAllister-Lucas LM, Nunez G
  Title
NF-kappaB signaling in lymphocytes: a new cast of characters.
  Journal
J Cell Sci 117:31-9 (2004)
DOI:10.1242/jcs.00904
Reference
  Authors
Khan WN
  Title
B cell receptor and BAFF receptor signaling regulation of B cell homeostasis.
  Journal
J Immunol 183:3561-7 (2009)
DOI:10.4049/jimmunol.0800933
Reference
  Authors
Vallabhapurapu S, Karin M
  Title
Regulation and function of NF-kappaB transcription factors in the immune system.
  Journal
Annu Rev Immunol 27:693-733 (2009)
DOI:10.1146/annurev.immunol.021908.132641
Reference
  Authors
Hacker H, Karin M
  Title
Regulation and function of IKK and IKK-related kinases.
  Journal
Sci STKE 2006:re13 (2006)
DOI:10.1126/stke.3572006re13
Reference
  Authors
Sabatel H, Pirlot C, Piette J, Habraken Y
  Title
Importance of PIKKs in NF-kappaB activation by genotoxic stress.
  Journal
Biochem Pharmacol 82:1371-83 (2011)
DOI:10.1016/j.bcp.2011.07.105
Reference
  Authors
Miyamoto S
  Title
Nuclear initiated NF-kappaB signaling: NEMO and ATM take center stage.
  Journal
Cell Res 21:116-30 (2011)
DOI:10.1038/cr.2010.179
Reference
  Authors
Brzoska K, Szumiel I
  Title
Signalling loops and linear pathways: NF-kappaB activation in response to genotoxic stress.
  Journal
Mutagenesis 24:1-8 (2009)
DOI:10.1093/mutage/gen056
Reference
  Authors
Wu ZH, Miyamoto S
  Title
Many faces of NF-kappaB signaling induced by genotoxic stress.
  Journal
J Mol Med (Berl) 85:1187-202 (2007)
DOI:10.1007/s00109-007-0227-9
Reference
  Authors
Maelfait J, Beyaert R
  Title
Emerging role of ubiquitination in antiviral RIG-I signaling.
  Journal
Microbiol Mol Biol Rev 76:33-45 (2012)
DOI:10.1128/MMBR.05012-11
Reference
  Authors
Ware CF
  Title
Targeting lymphocyte activation through the lymphotoxin and LIGHT pathways.
  Journal
Immunol Rev 223:186-201 (2008)
DOI:10.1111/j.1600-065X.2008.00629.x
Reference
  Authors
Schneider K, Potter KG, Ware CF
  Title
Lymphotoxin and LIGHT signaling pathways and target genes.
  Journal
Immunol Rev 202:49-66 (2004)
DOI:10.1111/j.0105-2896.2004.00206.x
Reference
  Authors
Remouchamps C, Boutaffala L, Ganeff C, Dejardin E
  Title
Biology and signal transduction pathways of the Lymphotoxin-alphabeta/LTbetaR system.
  Journal
Cytokine Growth Factor Rev 22:301-10 (2011)
DOI:10.1016/j.cytogfr.2011.11.007
Reference
  Authors
Liu S, Chen ZJ
  Title
Expanding role of ubiquitination in NF-kappaB signaling.
  Journal
Cell Res 21:6-21 (2011)
DOI:10.1038/cr.2010.170
Reference
  Authors
Skaug B, Jiang X, Chen ZJ
  Title
The role of ubiquitin in NF-kappaB regulatory pathways.
  Journal
Annu Rev Biochem 78:769-96 (2009)
DOI:10.1146/annurev.biochem.78.070907.102750
Reference
  Authors
Wertz IE, Dixit VM
  Title
Signaling to NF-kappaB: regulation by ubiquitination.
  Journal
Cold Spring Harb Perspect Biol 2:a003350 (2010)
DOI:10.1101/cshperspect.a003350
Reference
  Authors
Karin M, Lin A
  Title
NF-kappaB at the crossroads of life and death.
  Journal
Nat Immunol 3:221-7 (2002)
DOI:10.1038/ni0302-221
Reference
  Authors
Lin A, Karin M
  Title
NF-kappaB in cancer: a marked target.
  Journal
Semin Cancer Biol 13:107-14 (2003)
DOI:10.1016/S1044-579X(02)00128-1
Reference
  Authors
Morlon A, Munnich A, Smahi A
  Title
TAB2, TRAF6 and TAK1 are involved in NF-kappaB activation induced by the TNF-receptor, Edar and its adaptator Edaradd.
  Journal
Hum Mol Genet 14:3751-7 (2005)
DOI:10.1093/hmg/ddi405
Reference
  Authors
Sadier A, Viriot L, Pantalacci S, Laudet V
  Title
The ectodysplasin pathway: from diseases to adaptations.
  Journal
Trends Genet 30:24-31 (2014)
DOI:10.1016/j.tig.2013.08.006
Reference
  Authors
Verhelst K, Gardam S, Borghi A, Kreike M, Carpentier I, Beyaert R
  Title
XEDAR activates the non-canonical NF-kappaB pathway.
  Journal
Biochem Biophys Res Commun 465:275-80 (2015)
DOI:10.1016/j.bbrc.2015.08.019
Reference
  Authors
McDaniel DK, Eden K, Ringel VM, Allen IC
  Title
Emerging Roles for Noncanonical NF-kappaB Signaling in the Modulation of Inflammatory Bowel Disease Pathobiology.
  Journal
Inflamm Bowel Dis 22:2265-79 (2016)
DOI:10.1097/MIB.0000000000000858
Reference
  Authors
Mikkola ML, Thesleff I
  Title
Ectodysplasin signaling in development.
  Journal
Cytokine Growth Factor Rev 14:211-24 (2003)
DOI:10.1016/S1359-6101(03)00020-0
Reference
  Authors
Hu Y, Ge W, Wang X, Sutendra G, Zhao K, Dedeic Z, Slee EA, Baer C, Lu X
  Title
Caspase cleavage of iASPP potentiates its ability to inhibit p53 and NF-kappaB.
  Journal
Oncotarget 6:42478-90 (2015)
DOI:10.18632/oncotarget.6478
Related
pathway
mfot03050  Proteasome
mfot04020  Calcium signaling pathway
mfot04060  Cytokine-cytokine receptor interaction
mfot04120  Ubiquitin mediated proteolysis
mfot04210  Apoptosis
mfot04380  Osteoclast differentiation
mfot04620  Toll-like receptor signaling pathway
mfot04622  RIG-I-like receptor signaling pathway
mfot04660  T cell receptor signaling pathway
mfot04662  B cell receptor signaling pathway
KO pathway
ko04064   

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