KEGG   PATHWAY: osa03030
Entry
osa03030                    Pathway                                
Name
DNA replication - Oryza sativa japonica (Japanese rice)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
osa03030  DNA replication
osa03030

Organism
Oryza sativa japonica (Japanese rice) [GN:osa]
Gene
107275673  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
112936215  [KO:K03505]
4325052  [KO:K02320] [EC:2.7.7.7]
4326564  [KO:K03111]
4327080  [KO:K03504]
4327706  OsJ_01130; replication protein A 14 kDa subunit isoform X2 [KO:K10740]
4328433  [KO:K10745]
4329458  [KO:K02324] [EC:2.7.7.7]
4330068  OsRPA32-2; replication protein A 32 kDa subunit B [KO:K10739]
4330895  OsRFC3; replication factor C subunit 3 [KO:K10756]
4330902  OsJ_08582; replication protein A 70 kDa DNA-binding subunit A [KO:K07466]
4331016  MCM5; dNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
4331062  Cyclin; proliferating cell nuclear antigen [KO:K04802]
4331236  OsJ_08977; replication protein A 32 kDa subunit A [KO:K10739]
4331489  OJ1528D07.1; DNA polymerase delta small subunit [KO:K02328]
4332052  OsJ_09906; replication protein A 70 kDa DNA-binding subunit B [KO:K07466]
4334389  OsJ_12910; replication factor C subunit 5 [KO:K10756]
4334691  FEN1B; flap endonuclease 1-B [KO:K04799] [EC:3.1.-.-]
4336704  OsRFC4; replication factor C subunit 4 [KO:K10755]
4336807  [KO:K10742] [EC:5.6.2.3 3.1.-.-]
4337150  [KO:K02335] [EC:2.7.7.7]
4337594  OsJ_16860; replication protein A 70 kDa DNA-binding subunit C [KO:K07466]
4337886  [KO:K02325] [EC:2.7.7.7]
4338176  OsJ_17726; dNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
4339099  MCM3; dNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
4339464  FEN1A; flap endonuclease 1-A [KO:K04799] [EC:3.1.-.-]
4342990  [KO:K02685]
4344737  [KO:K03505]
4344789  OsJ_26226; DNA polymerase I A, chloroplastic [KO:K02335] [EC:2.7.7.7]
4344791  [KO:K02335] [EC:2.7.7.7]
4347604  P0669G04.6; uncharacterized LOC4347604 [KO:K03505]
4347894  [KO:K02326] [EC:2.7.7.7]
4348965  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
4349480  [KO:K10756]
4349811  [KO:K10743] [EC:3.1.26.4]
4349968  OspolD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
4350526  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
4350754  OsRFC1; replication factor C subunit 1 [KO:K10754]
4351654  OsJ_35406; replication factor C subunit 2 [KO:K10755]
4351872  [KO:K02321]
4352514  MCM7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
9266900  [KO:K10744]
9267485  [KO:K02684] [EC:2.7.7.102]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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