KEGG   PATHWAY: schu04622
Entry
schu04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Siniperca chuatsi (mandarin fish)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
schu04622  RIG-I-like receptor signaling pathway
schu04622

Organism
Siniperca chuatsi (mandarin fish) [GN:schu]
Gene
122885629  ifih1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
122882934  NFX1-type zinc finger-containing protein 1-like isoform X1 [KO:K27391]
122869483  dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
122861810  traf3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
122885424  tank; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650]
122881197  azi2; LOW QUALITY PROTEIN: 5-azacytidine-induced protein 2 [KO:K12651]
122869546  TANK-binding kinase 1-binding protein 1-like isoform X1 [KO:K12652]
122867808  tbkbp1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
122883045  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
122871438  tbk1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
122867775  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
122868143  irf3; interferon regulatory factor 3 isoform X1 [KO:K05411]
122874789  irf7; interferon regulatory factor 7 isoform X1 [KO:K09447]
122869125  ifnphi1; interferon phi 1 [KO:K05414]
122867615  interferon a3-like isoform X1 [KO:K05414]
122867624  interferon a3-like isoform X1 [KO:K05414]
122875669  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
122876412  fadd; protein FADD [KO:K02373]
122887413  ripk1l; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
122885921  casp10; caspase-8 [KO:K04398] [EC:3.4.22.61]
122886611  casp8; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
122886613  caspase-8-like [KO:K04398] [EC:3.4.22.61]
122884588  LOW QUALITY PROTEIN: inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
122868207  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
122875692  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
122862269  nfkbiab; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [KO:K04734]
122863348  nfkbiaa; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a [KO:K04734]
122880708  nfkb1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
122870615  rela; transcription factor p65 isoform X1 [KO:K04735]
122876306  traf2a; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
122865199  traf2b; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
122865536  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
122862874  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
122861795  mitogen-activated protein kinase kinase kinase 7-like isoform X1 [KO:K04427] [EC:2.7.11.25]
122870990  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
122883942  mapk8a; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
122865666  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
122880393  mapk9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
122867451  mapk8b; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
122868217  mapk14b; mitogen-activated protein kinase 14B isoform X1 [KO:K04441] [EC:2.7.11.24]
122882679  zgc:171775; STKc_p38 domain-containing protein isoform X1 [KO:K04441] [EC:2.7.11.24]
122883274  mapk13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
122883528  mapk14a; mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
122871338  mapk11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
122871339  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
122874303  mapk12a; mitogen-activated protein kinase 12 isoform X1 [KO:K04441] [EC:2.7.11.24]
122870413  cxcl19; C-X-C motif chemokine 19 [KO:K10030]
122873767  interleukin-8-like [KO:K10030]
122864206  tnfa; tumor necrosis factor a (TNF superfamily, member 2) [KO:K03156]
122878743  il12a; interleukin-12 subunit alpha isoform X1 [KO:K05406]
122875711  si:dkey-88e18.2; interleukin-12 subunit beta isoform X1 [KO:K05425]
122888396  il12bb; interleukin-12 subunit beta [KO:K05425]
122880857  il12ba; interleukin 12Ba isoform X1 [KO:K05425]
122875929  C-X-C motif chemokine 10-like [KO:K12671]
122882168  adar; double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
122868844  E3 ubiquitin-protein ligase TRIM21 [KO:K10652] [EC:2.3.2.27]
122869749  zgc:92594; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
122883487  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
122878517  ftr86; finTRIM family, member 86 [KO:K10652] [EC:2.3.2.27]
122872559  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
122872611  LOW QUALITY PROTEIN: E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
122872643  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
122873443  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
122869762  si:cabz01101003.1; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
122863494  cylda; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
122877809  cyldl; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
122887160  cyldb; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
122882275  atg5; autophagy protein 5 isoform X1 [KO:K08339]
122882105  atg12; ubiquitin-like protein ATG12 isoform X1 [KO:K08336]
122878826  nlrx1; NLR family member X1 isoform X1 [KO:K12653]
122879820  sting1; stimulator of interferon genes protein isoform X1 [KO:K12654]
122882659  otud5a; OTU domain-containing protein 5-A isoform X1 [KO:K12655] [EC:3.4.19.12]
122883069  sike1; suppressor of IKBKE 1 [KO:K12656]
122872051  ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 [KO:K11594] [EC:5.6.2.7]
122885335  ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 [KO:K11594] [EC:5.6.2.7]
122873361  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
122869688  tkfc; triokinase/FMN cyclase isoform X1 [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
schu04010  MAPK signaling pathway
schu04120  Ubiquitin mediated proteolysis
schu04210  Apoptosis
KO pathway
ko04622   
LinkDB

DBGET integrated database retrieval system