KEGG   PATHWAY: setr04120
Entry
setr04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Suncus etruscus (white-toothed pygmy shrew)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
setr04120  Ubiquitin mediated proteolysis
setr04120

Other DBs
GO: 0016567
Organism
Suncus etruscus (white-toothed pygmy shrew) [GN:setr]
Gene
125994843  [KO:K03872]
125994977  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
125995833  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
125995962  CUL7; cullin-7 [KO:K10613]
125996569  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
125997379  [KO:K10574] [EC:2.3.2.23]
125997887  [KO:K20217] [EC:2.3.2.23]
125997888  [KO:K20217] [EC:2.3.2.23]
125998093  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
125998714  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
125998814  [KO:K04506] [EC:2.3.2.27]
125998820  [KO:K10260]
125999096  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
125999126  [KO:K10260]
125999140  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
125999158  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
125999308  [KO:K03872]
125999371  [KO:K06688] [EC:2.3.2.23]
125999459  [KO:K06643] [EC:2.3.2.27]
125999499  CUL4B; cullin-4B isoform X1 [KO:K10609]
125999507  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
125999552  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
126000215  FBXO4; F-box only protein 4 [KO:K10291]
126000494  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
126000793  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
126000835  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
126000905  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
126000968  CUL3; LOW QUALITY PROTEIN: cullin-3 [KO:K03869]
126001150  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
126001194  [KO:K10577]
126001241  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
126001285  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
126001306  ELOB; elongin-B [KO:K03873]
126001510  ERCC8; DNA excision repair protein ERCC-8 [KO:K10570]
126001786  [KO:K10591] [EC:2.3.2.26]
126001810  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
126001850  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
126001960  [KO:K03094]
126001977  [KO:K03094]
126002022  UBC; polyubiquitin-C isoform X1 [KO:K08770]
126002056  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
126002155  KLHL9; kelch-like protein 9 [KO:K10447]
126002926  CUL1; cullin-1 [KO:K03347]
126003293  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
126003417  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
126003797  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
126004511  [KO:K03094]
126004568  [KO:K03872]
126006079  [KO:K03873]
126006345  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
126006744  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
126007818  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
126008581  [KO:K25228]
126009135  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
126009218  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
126009303  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
126009422  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
126009521  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
126009615  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
126009645  [KO:K06689] [EC:2.3.2.23]
126010922  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
126011120  CDC20; LOW QUALITY PROTEIN: cell division cycle protein 20 homolog [KO:K03363]
126011332  [KO:K02977]
126011387  PML; protein PML [KO:K10054] [EC:2.3.2.-]
126011478  [KO:K02927]
126011500  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
126011562  FBXO2; F-box only protein 2 [KO:K10099]
126011642  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
126011865  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
126012194  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
126012220  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
126012689  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
126013226  [KO:K25229]
126013380  CUL2; cullin-2 isoform X1 [KO:K03870]
126013382  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
126013658  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
126013678  UBB; polyubiquitin-B isoform X1 [KO:K08770]
126013861  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
126013978  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
126014414  UBA7; LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
126014577  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
126015478  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
126015560  CUL4A; cullin-4A isoform X1 [KO:K10609]
126015563  CDC16; cell division cycle protein 16 homolog [KO:K03353]
126015588  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
126016039  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
126016070  [KO:K06688] [EC:2.3.2.23]
126016078  [KO:K16060]
126016286  [KO:K03094]
126016378  CUL5; LOW QUALITY PROTEIN: cullin-5 [KO:K10612]
126016868  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
126017161  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
126017286  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
126017337  UBOX5; LOW QUALITY PROTEIN: RING finger protein 37 [KO:K10600]
126017338  [KO:K10600]
126017469  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
126017481  [KO:K03872]
126017658  DDB2; DNA damage-binding protein 2 [KO:K10140]
126017912  DDB1; DNA damage-binding protein 1 [KO:K10610]
126017923  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
126017925  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
126018030  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
126018337  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
126018548  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
126018709  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
126020041  [KO:K10611]
126020069  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
126020166  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
126020388  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
126020390  ELOC; elongin-C [KO:K03872]
126020554  [KO:K03094]
126020566  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
126020641  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
126020726  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
126020864  PIAS3; E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
126020972  [KO:K10688] [EC:2.3.2.23 2.3.2.25]
126021328  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
126021850  HERC2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
126021851  UBE3A; LOW QUALITY PROTEIN: ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
126021915  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
126021962  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
126022167  [KO:K03178] [EC:6.2.1.45]
126022369  DET1; LOW QUALITY PROTEIN: DET1 homolog [KO:K10571]
126022405  [KO:K10054] [EC:2.3.2.-]
126022962  HERC1; probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
126024013  ANAPC1; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 1 [KO:K03348]
126024143  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
126024312  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
126024387  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
126024660  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
126024765  [KO:K06688] [EC:2.3.2.23]
126025469  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
126025569  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
126025658  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
126025915  AIRE; autoimmune regulator [KO:K10603]
126025968  CBLB; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
126026111  [KO:K03094]
126027026  CDC23; cell division cycle protein 23 homolog [KO:K03355]
126027057  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
126027104  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
126027349  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
126027547  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
126027598  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
126027783  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
126027785  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
126028051  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
126028058  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
126028247  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
126028568  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
126029465  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
126029684  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
126030288  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
126030387  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
126030423  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
126030530  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
126030568  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
126030589  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
126030592  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
126030975  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
126032047  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
126032339  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
126032355  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
126032439  [KO:K03347]
126032489  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
126032632  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
126032651  [KO:K03868] [EC:2.3.2.32]
126033515  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
126033554  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
126033681  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
126033740  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
126033833  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
setr03050  Proteasome
KO pathway
ko04120   

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