KEGG   PATHWAY: smo03018
Entry
smo03018                    Pathway                                
Name
RNA degradation - Selaginella moellendorffii
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
smo03018  RNA degradation
smo03018

Other DBs
GO: 0006401
Organism
Selaginella moellendorffii [GN:smo]
Gene
SELMODRAFT_175887  hypothetical protein [KO:K07573]
SELMODRAFT_178307  hypothetical protein [KO:K07573]
SELMODRAFT_84338  hypothetical protein [KO:K03679]
SELMODRAFT_147871  hypothetical protein [KO:K03679]
SELMODRAFT_141745  hypothetical protein [KO:K03681]
SELMODRAFT_102189  hypothetical protein [KO:K03681]
SELMODRAFT_233365  hypothetical protein [KO:K12586]
SELMODRAFT_176463  hypothetical protein [KO:K12586]
SELMODRAFT_441621  hypothetical protein [KO:K12587]
SELMODRAFT_80529  hypothetical protein [KO:K12587]
SELMODRAFT_102800  hypothetical protein [KO:K12589]
SELMODRAFT_106958  hypothetical protein [KO:K12589]
SELMODRAFT_233636  hypothetical protein [KO:K11600]
SELMODRAFT_155148  hypothetical protein [KO:K11600]
SELMODRAFT_77552  hypothetical protein [KO:K03678]
SELMODRAFT_94605  hypothetical protein [KO:K03678]
SELMODRAFT_180518  hypothetical protein [KO:K12585] [EC:3.1.13.-]
SELMODRAFT_129119  hypothetical protein [KO:K12585] [EC:3.1.13.-]
SELMODRAFT_84661  hypothetical protein [KO:K12591] [EC:3.1.13.-]
SELMODRAFT_95804  hypothetical protein [KO:K12591] [EC:3.1.13.-]
SELMODRAFT_405733  hypothetical protein [KO:K12592]
SELMODRAFT_442808  hypothetical protein [KO:K12592]
SELMODRAFT_445658  hypothetical protein [KO:K18681] [EC:3.1.13.-]
SELMODRAFT_447538  hypothetical protein [KO:K18681] [EC:3.1.13.-]
SELMODRAFT_11961  hypothetical protein [KO:K03514] [EC:2.7.7.19]
SELMODRAFT_22150  hypothetical protein [KO:K03514] [EC:2.7.7.19]
SELMODRAFT_268485  hypothetical protein [KO:K12598] [EC:5.6.2.6]
SELMODRAFT_79650  hypothetical protein [KO:K12598] [EC:5.6.2.6]
SELMODRAFT_174598  hypothetical protein [KO:K12598] [EC:5.6.2.6]
SELMODRAFT_107227  hypothetical protein [KO:K12598] [EC:5.6.2.6]
SELMODRAFT_403447  hypothetical protein [KO:K12599] [EC:5.6.2.6]
SELMODRAFT_441420  hypothetical protein [KO:K12599] [EC:5.6.2.6]
SELMODRAFT_115934  hypothetical protein [KO:K12600]
SELMODRAFT_229638  hypothetical protein [KO:K12602]
SELMODRAFT_269750  hypothetical protein [KO:K12602]
SELMODRAFT_270348  hypothetical protein [KO:K12603] [EC:3.1.13.4]
SELMODRAFT_178984  hypothetical protein [KO:K12603] [EC:3.1.13.4]
SELMODRAFT_418021  hypothetical protein [KO:K12603] [EC:3.1.13.4]
SELMODRAFT_108336  hypothetical protein [KO:K12603] [EC:3.1.13.4]
SELMODRAFT_86257  hypothetical protein [KO:K12603] [EC:3.1.13.4]
SELMODRAFT_440060  hypothetical protein [KO:K12604]
SELMODRAFT_444949  hypothetical protein [KO:K12604]
SELMODRAFT_10839  hypothetical protein [KO:K12605]
SELMODRAFT_430429  hypothetical protein [KO:K12605]
SELMODRAFT_109010  hypothetical protein [KO:K12580]
SELMODRAFT_93109  hypothetical protein [KO:K12580]
SELMODRAFT_84624  hypothetical protein [KO:K12581]
SELMODRAFT_117491  hypothetical protein [KO:K12581]
SELMODRAFT_179583  hypothetical protein [KO:K12581]
SELMODRAFT_444748  hypothetical protein [KO:K12581]
SELMODRAFT_236668  hypothetical protein [KO:K12606]
SELMODRAFT_174818  hypothetical protein [KO:K12606]
SELMODRAFT_61158  hypothetical protein [KO:K12607]
SELMODRAFT_41131  hypothetical protein [KO:K12607]
SELMODRAFT_73877  SmABCI2; ATP-binding cassette transporter, subfamily I, member 2, SmABCI2 [KO:K12608]
SELMODRAFT_90072  SmABCI1; ATP-binding cassette transporter, subfamily I, member 1, SmABCI1 [KO:K12608]
SELMODRAFT_100336  hypothetical protein [KO:K12608]
SELMODRAFT_119272  hypothetical protein [KO:K12608]
SELMODRAFT_446247  hypothetical protein [KO:K14442] [EC:5.6.2.6]
SELMODRAFT_426836  hypothetical protein [KO:K14442] [EC:5.6.2.6]
SELMODRAFT_154147  hypothetical protein [KO:K14442] [EC:5.6.2.6]
SELMODRAFT_437743  hypothetical protein [KO:K14442] [EC:5.6.2.6]
SELMODRAFT_419303  hypothetical protein [KO:K14442] [EC:5.6.2.6]
SELMODRAFT_98495  hypothetical protein [KO:K14442] [EC:5.6.2.6]
SELMODRAFT_40134  hypothetical protein [KO:K14442] [EC:5.6.2.6]
SELMODRAFT_50132  hypothetical protein [KO:K14442] [EC:5.6.2.6]
SELMODRAFT_446815  hypothetical protein [KO:K01148] [EC:3.1.13.4]
SELMODRAFT_410403  hypothetical protein [KO:K01148] [EC:3.1.13.4]
SELMODRAFT_424560  hypothetical protein [KO:K01148] [EC:3.1.13.4]
SELMODRAFT_451150  hypothetical protein [KO:K01148] [EC:3.1.13.4]
SELMODRAFT_101161  hypothetical protein [KO:K13126]
SELMODRAFT_122762  hypothetical protein [KO:K13126]
SELMODRAFT_269256  hypothetical protein [KO:K13126]
SELMODRAFT_269487  hypothetical protein [KO:K13126]
SELMODRAFT_21095  hypothetical protein [KO:K13126]
SELMODRAFT_74731  hypothetical protein [KO:K13126]
SELMODRAFT_168822  hypothetical protein [KO:K13126]
SELMODRAFT_10868  hypothetical protein [KO:K13126]
SELMODRAFT_28398  hypothetical protein [KO:K12611] [EC:3.-.-.-]
SELMODRAFT_438877  hypothetical protein [KO:K12613] [EC:3.6.1.62]
SELMODRAFT_427515  hypothetical protein [KO:K12613] [EC:3.6.1.62]
SELMODRAFT_158648  hypothetical protein [KO:K12614] [EC:5.6.2.7]
SELMODRAFT_235717  hypothetical protein [KO:K12614] [EC:5.6.2.7]
SELMODRAFT_112306  hypothetical protein [KO:K12617]
SELMODRAFT_165728  hypothetical protein [KO:K12617]
SELMODRAFT_146440  hypothetical protein [KO:K12620]
SELMODRAFT_94071  hypothetical protein [KO:K12620]
SELMODRAFT_175720  hypothetical protein [KO:K12621]
SELMODRAFT_232056  hypothetical protein [KO:K12621]
SELMODRAFT_107803  hypothetical protein [KO:K12622]
SELMODRAFT_125039  hypothetical protein [KO:K12622]
SELMODRAFT_81834  hypothetical protein [KO:K12623]
SELMODRAFT_128761  hypothetical protein [KO:K12623]
SELMODRAFT_90525  hypothetical protein [KO:K12624]
SELMODRAFT_130618  hypothetical protein [KO:K12624]
SELMODRAFT_235757  hypothetical protein [KO:K12625]
SELMODRAFT_268399  hypothetical protein [KO:K12625]
SELMODRAFT_417493  hypothetical protein [KO:K12626]
SELMODRAFT_415303  hypothetical protein [KO:K12626]
SELMODRAFT_417143  hypothetical protein [KO:K12627]
SELMODRAFT_83281  hypothetical protein [KO:K12627]
SELMODRAFT_165356  hypothetical protein [KO:K01689] [EC:4.2.1.11]
SELMODRAFT_167539  hypothetical protein [KO:K01689] [EC:4.2.1.11]
SELMODRAFT_120189  hypothetical protein [KO:K01689] [EC:4.2.1.11]
SELMODRAFT_96269  hypothetical protein [KO:K01689] [EC:4.2.1.11]
SELMODRAFT_231966  hypothetical protein [KO:K01689] [EC:4.2.1.11]
SELMODRAFT_78644  hypothetical protein [KO:K01689] [EC:4.2.1.11]
SELMODRAFT_77425  hypothetical protein [KO:K00962] [EC:2.7.7.8]
SELMODRAFT_84724  hypothetical protein [KO:K00962] [EC:2.7.7.8]
SELMODRAFT_113341  hypothetical protein [KO:K00962] [EC:2.7.7.8]
SELMODRAFT_104548  hypothetical protein [KO:K00962] [EC:2.7.7.8]
SELMODRAFT_408296  hypothetical protein [KO:K03654] [EC:5.6.2.4]
SELMODRAFT_402571  hypothetical protein [KO:K03654] [EC:5.6.2.4]
SELMODRAFT_146031  hypothetical protein [KO:K00850] [EC:2.7.1.11]
SELMODRAFT_178124  hypothetical protein [KO:K00850] [EC:2.7.1.11]
SELMODRAFT_100675  hypothetical protein [KO:K00850] [EC:2.7.1.11]
SELMODRAFT_187341  hypothetical protein [KO:K00850] [EC:2.7.1.11]
SELMODRAFT_150344  hypothetical protein [KO:K00850] [EC:2.7.1.11]
SELMODRAFT_176350  hypothetical protein [KO:K00850] [EC:2.7.1.11]
SELMODRAFT_438337  hypothetical protein [KO:K00850] [EC:2.7.1.11]
SELMODRAFT_138352  hypothetical protein [KO:K00850] [EC:2.7.1.11]
SELMODRAFT_168287  hypothetical protein [KO:K04043]
SELMODRAFT_176842  hypothetical protein [KO:K04043]
SELMODRAFT_165043  hypothetical protein [KO:K04077] [EC:5.6.1.7]
SELMODRAFT_405358  hypothetical protein [KO:K04077] [EC:5.6.1.7]
SELMODRAFT_85251  hypothetical protein [KO:K04077] [EC:5.6.1.7]
SELMODRAFT_108429  hypothetical protein [KO:K04077] [EC:5.6.1.7]
SELMODRAFT_271545  hypothetical protein [KO:K04077] [EC:5.6.1.7]
SELMODRAFT_74977  hypothetical protein [KO:K04077] [EC:5.6.1.7]
SELMODRAFT_87823  hypothetical protein [KO:K04077] [EC:5.6.1.7]
SELMODRAFT_142800  hypothetical protein [KO:K04077] [EC:5.6.1.7]
SELMODRAFT_168153  hypothetical protein [KO:K04077] [EC:5.6.1.7]
SELMODRAFT_159265  hypothetical protein [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
smo03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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