KEGG   PATHWAY: stru04622
Entry
stru04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Salmo trutta (river trout)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
stru04622  RIG-I-like receptor signaling pathway
stru04622

Organism
Salmo trutta (river trout) [GN:stru]
Gene
115194763  ddx58; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
115156064  ifih1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
115208369  NFX1-type zinc finger-containing protein 1-like [KO:K27391]
115150100  NFX1-type zinc finger-containing protein 1-like [KO:K27391]
115173045  calphotin-like [KO:K12648]
115171111  probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
115197943  probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
115162102  TNF receptor-associated factor 3-like [KO:K03174]
115172380  TNF receptor-associated factor 3-like [KO:K03174]
115156068  tank; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650]
115160712  TRAF family member-associated NF-kappa-B activator-like isoform X1 [KO:K12650]
115187935  5-azacytidine-induced protein 2-like [KO:K12651]
115187936  5-azacytidine-induced protein 2-like [KO:K12651]
115158510  tbkbp1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
115170997  TANK-binding kinase 1-binding protein 1-like isoform X1 [KO:K12652]
115201046  TANK-binding kinase 1-binding protein 1-like [KO:K12652]
115196843  TANK-binding kinase 1-binding protein 1-like [KO:K12652]
115168741  NF-kappa-B essential modulator-like [KO:K07210]
115165245  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
115189789  serine/threonine-protein kinase TBK1-like [KO:K05410] [EC:2.7.11.10]
115189827  serine/threonine-protein kinase TBK1-like isoform X1 [KO:K05410] [EC:2.7.11.10]
115207524  inhibitor of nuclear factor kappa-B kinase subunit epsilon-like [KO:K07211] [EC:2.7.11.10]
115162648  interferon regulatory factor 3-like isoform X1 [KO:K05411]
115152118  interferon regulatory factor 7-like [KO:K09447]
115197304  interferon regulatory factor 3-like [KO:K09447]
115193436  interferon alpha-6-like [KO:K05414]
115170596  interferon beta-like [KO:K05414]
115170660  interferon a3-like [KO:K05414]
115170661  interferon beta-like [KO:K05414]
115170951  interferon a3-like isoform X1 [KO:K05414]
115170955  interferon a3-like isoform X1 [KO:K05414]
115170956  interferon a3-like isoform X1 [KO:K05414]
115170959  interferon a3-like isoform X1 [KO:K05414]
115170960  interferon a3-like isoform X1 [KO:K05414]
115170963  interferon a3-like isoform X1 [KO:K05414]
115170964  interferon a3-like isoform X1 [KO:K05414]
115170966  interferon a3-like [KO:K05414]
115170969  interferon a3-like isoform X1 [KO:K05414]
115170970  interferon a3-like [KO:K05414]
115170971  interferon a3 [KO:K05414]
115196524  interferon alpha-6-like [KO:K05414]
115161438  interferon a3-like isoform X1 [KO:K05414]
115170597  interferon a3-like [KO:K05414]
115170598  interferon a3-like [KO:K05414]
115170662  interferon a3-like [KO:K05414]
115170663  interferon a3-like [KO:K05414]
115170950  interferon a3-like [KO:K05414]
115170952  interferon a3-like [KO:K05414]
115170965  interferon tau-10-like [KO:K05414]
115170967  interferon a3-like [KO:K05414]
115170974  interferon epsilon-like [KO:K05414]
115196551  interferon a3-like [KO:K05414]
115167216  tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
115203119  tumor necrosis factor receptor type 1-associated DEATH domain protein-like [KO:K03171]
115167502  FAS-associated death domain protein-like [KO:K02373]
115202892  FAS-associated death domain protein-like [KO:K02373]
115169632  receptor-interacting serine/threonine-protein kinase 1-like isoform X1 [KO:K02861] [EC:2.7.11.1]
115157139  ripk1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
115169467  caspase-8-like [KO:K04398] [EC:3.4.22.61]
115155490  caspase-8-like isoform X1 [KO:K04398] [EC:3.4.22.61]
115160794  caspase-8-like [KO:K04398] [EC:3.4.22.61]
115157338  caspase-8-like [KO:K04398] [EC:3.4.22.61]
115158948  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
115162780  inhibitor of nuclear factor kappa-B kinase subunit alpha-like isoform X1 [KO:K04467] [EC:2.7.11.10]
115201018  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
115200286  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
115174991  NF-kappa-B inhibitor alpha-like [KO:K04734]
115162129  NF-kappa-B inhibitor alpha-like [KO:K04734]
115172401  NF-kappa-B inhibitor alpha-like [KO:K04734]
115196043  NF-kappa-B inhibitor alpha-like [KO:K04734]
115173310  nuclear factor NF-kappa-B p105 subunit-like isoform X1 [KO:K02580]
115205318  nuclear factor NF-kappa-B p105 subunit-like isoform X1 [KO:K02580]
115194158  transcription factor p65-like isoform X1 [KO:K04735]
115198165  putative transcription factor p65 homolog [KO:K04735]
115159584  TNF receptor-associated factor 2-like isoform X1 [KO:K03173] [EC:2.3.2.27]
115159699  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
115164249  TNF receptor-associated factor 2-like isoform X1 [KO:K03173] [EC:2.3.2.27]
115203961  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
115204052  TNF receptor-associated factor 2-like isoform X1 [KO:K03173] [EC:2.3.2.27]
115174914  mitogen-activated protein kinase kinase kinase 7-like isoform X1 [KO:K04427] [EC:2.7.11.25]
115162495  mitogen-activated protein kinase kinase kinase 7-like [KO:K04427] [EC:2.7.11.25]
115172787  mitogen-activated protein kinase kinase kinase 7-like [KO:K04427] [EC:2.7.11.25]
115194264  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
115166780  TNF receptor-associated factor 6-like [KO:K03175] [EC:2.3.2.27]
115203637  TNF receptor-associated factor 6-like [KO:K03175] [EC:2.3.2.27]
115160088  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
115194041  mitogen-activated protein kinase 8-like isoform X1 [KO:K04440] [EC:2.7.11.24]
115157756  mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
115174527  mitogen-activated protein kinase 9-like isoform X1 [KO:K04440] [EC:2.7.11.24]
115152965  mitogen-activated protein kinase 8-like isoform X1 [KO:K04440] [EC:2.7.11.24]
115159070  mitogen-activated protein kinase 10-like isoform X1 [KO:K04440] [EC:2.7.11.24]
115149487  mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
115201108  mitogen-activated protein kinase 8-like isoform X1 [KO:K04440] [EC:2.7.11.24]
115204538  mitogen-activated protein kinase 9-like [KO:K04440] [EC:2.7.11.24]
115152195  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
115180302  mitogen-activated protein kinase 11-like isoform X1 [KO:K04441] [EC:2.7.11.24]
115180375  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
115169006  mitogen-activated protein kinase 14A-like isoform X1 [KO:K04441] [EC:2.7.11.24]
115169019  mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
115165421  mitogen-activated protein kinase 14A-like [KO:K04441] [EC:2.7.11.24]
115165434  mitogen-activated protein kinase 14A-like isoform X1 [KO:K04441] [EC:2.7.11.24]
115166089  mitogen-activated protein kinase 13-like [KO:K04441] [EC:2.7.11.24]
115151057  mitogen-activated protein kinase 14A-like [KO:K04441] [EC:2.7.11.24]
115207356  mitogen-activated protein kinase 14A-like isoform X1 [KO:K04441] [EC:2.7.11.24]
115197396  mitogen-activated protein kinase 12-like isoform X1 [KO:K04441] [EC:2.7.11.24]
115198903  mitogen-activated protein kinase 11-like [KO:K04441] [EC:2.7.11.24]
115198904  mitogen-activated protein kinase 12-like isoform X1 [KO:K04441] [EC:2.7.11.24]
115170621  permeability factor 2-like [KO:K10030]
115162898  interleukin-8-like [KO:K10030]
115171360  permeability factor 2-like [KO:K10030]
115201607  interleukin-8-like [KO:K10030]
115201616  interleukin-8-like [KO:K10030]
115174125  tumor necrosis factor-like [KO:K03156]
115175311  tumor necrosis factor-like [KO:K03156]
115162812  uncharacterized protein LOC115162812 [KO:K05406]
115169258  interleukin-12 subunit alpha-like [KO:K05406]
115153954  interleukin-12 subunit beta-like isoform X1 [KO:K05425]
115163975  interleukin-12 subunit beta-like [KO:K05425]
115167701  interleukin-12 subunit beta-like [KO:K05425]
115148491  interleukin-12 subunit beta-like [KO:K05425]
115205629  interleukin-12 subunit beta-like [KO:K05425]
115177204  double-stranded RNA-specific adenosine deaminase-like isoform X1 [KO:K12968] [EC:3.5.4.37]
115177266  double-stranded RNA-specific adenosine deaminase-like isoform X1 [KO:K12968] [EC:3.5.4.37]
115191201  tripartite motif-containing protein 16-like [KO:K10652] [EC:2.3.2.27]
115191204  E3 ubiquitin-protein ligase TRIM47-like isoform X1 [KO:K10652] [EC:2.3.2.27]
115168169  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
115163142  tripartite motif-containing protein 16-like isoform X1 [KO:K10652] [EC:2.3.2.27]
115178139  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
115194564  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
115208610  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
115198531  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
115158667  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
115167028  ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1 [KO:K08601] [EC:3.4.19.12]
115150833  ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1 [KO:K08601] [EC:3.4.19.12]
115194577  ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1 [KO:K08601] [EC:3.4.19.12]
115207596  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
115203293  ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1 [KO:K08601] [EC:3.4.19.12]
115176684  autophagy protein 5-like [KO:K08339]
115179301  autophagy protein 5-like [KO:K08339]
115188596  ubiquitin-like protein ATG12 isoform X1 [KO:K08336]
115177056  ubiquitin-like protein ATG12 [KO:K08336]
115205900  NLR family member X1-like isoform X1 [KO:K12653]
115169157  stimulator of interferon genes protein-like [KO:K12654]
115205559  stimulator of interferon genes protein-like [KO:K12654]
115168569  otud5; OTU domain-containing protein 5 isoform X1 [KO:K12655] [EC:3.4.19.12]
115165882  sike1; suppressor of IKBKE 1 [KO:K12656]
115155912  ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
115179138  putative ATP-dependent RNA helicase Pl10 isoform X1 [KO:K11594] [EC:5.6.2.7]
115161302  ATP-dependent RNA helicase DDX3X-like isoform X1 [KO:K11594] [EC:5.6.2.7]
115177602  peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like isoform X1 [KO:K09578] [EC:5.2.1.8]
115147652  peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like isoform X1 [KO:K09578] [EC:5.2.1.8]
115198044  tkfc; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
stru04010  MAPK signaling pathway
stru04120  Ubiquitin mediated proteolysis
stru04210  Apoptosis
KO pathway
ko04622   
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