Entry
Name
Apoptosis - Kryptolebias marmoratus (mangrove rivulus)
Description
Apoptosis is a genetically programmed process for the elimination of damaged or redundant cells by activation of caspases (aspartate-specific cysteine proteases). The onset of apoptosis is controlled by numerous interrelating processes. The 'extrinsic' pathway involves stimulation of members of the tumor necrosis factor (TNF) receptor subfamily, such as TNFRI, CD95/Fas or TRAILR (death receptors), located at the cell surface, by their specific ligands, such as TNF-alpha, FasL or TRAIL, respectively. The 'intrinsic' pathway is activated mainly by non-receptor stimuli, such as DNA damage, ER stress, metabolic stress, UV radiation or growth-factor deprivation. The central event in the 'intrinsic' pathway is the mitochondrial outer membrane permeabilization (MOMP), which leads to the release of cytochrome c. These two pathways converge at the level of effector caspases, such as caspase-3 and caspase-7. The third major pathway is initiated by the constituents of cytotoxic granules (e.g. Perforin and Granzyme B) that are released by CTLs (cytotoxic T-cells) and NK (natural killer) cells. Granzyme B, similarly to the caspases, cleaves its substrates after aspartic acid residues, suggesting that this protease has the ability to activate members of the caspase family directly. It is the balance between the pro-apoptotic and anti-apoptotic signals that eventually determines whether cells will undergo apoptosis, survive or proliferate. TNF family of ligands activates anti-apoptotic or cell-survival signals as well as apoptotic signals. NGF and Interleukin-3 promotes the survival, proliferation and differentiation of neurons or hematopoietic cells, respectively. Withdrawal of these growth factors leads to cell death, as described above.
Class
Cellular Processes; Cell growth and death
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Kryptolebias marmoratus (mangrove rivulus) [GN:
kmr ]
Gene
108247980 tumor necrosis factor ligand superfamily member 10-like isoform X1 [KO:K04721 ]
108234661 tnfsf10; tumor necrosis factor ligand superfamily member 10 [KO:K04721 ]
108247039 tumor necrosis factor receptor superfamily member 10A isoform X1 [KO:K04722 ]
108242614 tnfrsfa; tumor necrosis factor receptor superfamily, member a [KO:K04722 ]
108230718 faslg; tumor necrosis factor ligand superfamily member 6 [KO:K04389 ]
108243471 fas; tumor necrosis factor receptor superfamily member 6 [KO:K04390 ]
108248581 tnfa; tumor necrosis factor a (TNF superfamily, member 2) [KO:K03156 ]
108235424 tnfrsf1a; tumor necrosis factor receptor superfamily member 1A [KO:K03158 ]
108236809 si:ch211-112c15.8; tumor necrosis factor receptor superfamily member 1A isoform X1 [KO:K03158 ]
108251103 tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171 ]
108233243 apaf1; apoptotic protease-activating factor 1 isoform X2 [KO:K02084 ]
108243239 mcl1b; induced myeloid leukemia cell differentiation protein Mcl-1b [KO:K02539 ]
108250310 sptan1; spectrin alpha chain, non-erythrocytic 1 isoform X5 [KO:K06114 ]
108233128 dffb; DNA fragmentation factor subunit beta [KO:K02311 ] [EC:3.-.-.-]
108233891 aifm1; apoptosis-inducing factor 1, mitochondrial isoform X1 [KO:K04727 ] [EC:1.-.-.-]
108235741 itpr1a; inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
108244393 itpr1b; inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
108239960 itpr2; inositol 1,4,5-trisphosphate receptor type 2 isoform X2 [KO:K04959 ]
108233445 eif2s1b; eukaryotic translation initiation factor 2 subunit 1b [KO:K03237 ]
108231541 atf4a; cyclic AMP-dependent transcription factor ATF-4 isoform X1 [KO:K04374 ]
108244583 birc5b; baculoviral IAP repeat-containing protein 5b isoform X1 [KO:K08731 ]
108242862 badb; BCL2 associated agonist of cell death b isoform X3 [KO:K02158 ]
108242438 fosab; v-fos FBJ murine osteosarcoma viral oncogene homolog Ab [KO:K04379 ]
108231757 nfkbiaa; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a [KO:K04734 ]
108241774 nfkbiab; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [KO:K04734 ]
108231014 ptpn13; tyrosine-protein phosphatase non-receptor type 13 isoform X1 [KO:K02374 ]
108246248 gadd45ab; growth arrest and DNA-damage-inducible, alpha, b [KO:K04402 ]
108233587 gadd45ga; growth arrest and DNA-damage-inducible, gamma a [KO:K04402 ]
108246648 growth arrest and DNA damage-inducible protein GADD45 beta [KO:K04402 ]
108250912 gadd45gb.1; growth arrest and DNA-damage-inducible, gamma b, tandem duplicate 1 [KO:K04402 ]
108244486 gadd45aa; growth arrest and DNA-damage-inducible, alpha, a [KO:K04402 ]
108233341 growth arrest and DNA damage-inducible protein GADD45 beta-like [KO:K04402 ]
119617657 pmaip1; phorbol-12-myristate-13-acetate-induced protein 1 [KO:K10131 ]
108239366 pik3cb; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform [KO:K00922 ] [EC:2.7.1.153 ]
108236692 pik3cd; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform [KO:K00922 ] [EC:2.7.1.153 ]
108248584 zgc:158659; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922 ] [EC:2.7.1.153 ]
108245882 phosphatidylinositol 3-kinase regulatory subunit alpha [KO:K02649 ]
108244850 pik3r2; phosphatidylinositol 3-kinase regulatory subunit beta [KO:K02649 ]
108250884 pik3r1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649 ]
108247561 pik3r3b; phosphoinositide-3-kinase, regulatory subunit 3b (gamma) isoform X1 [KO:K02649 ]
108238336 phosphatidylinositol 3-kinase regulatory subunit gamma isoform X1 [KO:K02649 ]
108234365 phosphatidylinositol 3-kinase regulatory subunit gamma isoform X1 [KO:K02649 ]
Compound
C05981 Phosphatidylinositol-3,4,5-trisphosphate
Reference
Authors
Savitskaya MA, Onishchenko GE
Title
Mechanisms of Apoptosis.
Journal
Reference
Authors
Schleich K, Lavrik IN
Title
Mathematical modeling of apoptosis.
Journal
Reference
Authors
Lavrik I, Golks A, Krammer PH
Title
Death receptor signaling.
Journal
Reference
Authors
Jin Z, El-Deiry WS
Title
Overview of cell death signaling pathways.
Journal
Reference
Authors
Benn SC, Woolf CJ
Title
Adult neuron survival strategies--slamming on the brakes.
Journal
Reference
Authors
Orrenius S, Zhivotovsky B, Nicotera P
Title
Regulation of cell death: the calcium-apoptosis link.
Journal
Reference
Authors
Clarke P, Tyler KL
Title
Apoptosis in animal models of virus-induced disease.
Journal
Reference
Authors
Wen X, Lin ZQ, Liu B, Wei YQ
Title
Caspase-mediated programmed cell death pathways as potential therapeutic targets in cancer.
Journal
Reference
Authors
Shalini S, Dorstyn L, Dawar S, Kumar S
Title
Old, new and emerging functions of caspases.
Journal
Reference
Authors
Philchenkov A
Title
Caspases: potential targets for regulating cell death.
Journal
Reference
Authors
Stroh C, Schulze-Osthoff K
Title
Death by a thousand cuts: an ever increasing list of caspase substrates.
Journal
Reference
Authors
Safa AR
Title
c-FLIP, a master anti-apoptotic regulator.
Journal
Exp Oncol 34:176-84 (2012)
Reference
Authors
Jeong SY, Seol DW
Title
The role of mitochondria in apoptosis.
Journal
Reference
Authors
Parsons MJ, Green DR
Title
Mitochondria in cell death.
Journal
Reference
Authors
Strasser A
Title
The role of BH3-only proteins in the immune system.
Journal
Reference
Authors
Schonthal AH
Title
Endoplasmic reticulum stress: its role in disease and novel prospects for therapy.
Journal
Reference
Authors
Malhi H, Kaufman RJ
Title
Endoplasmic reticulum stress in liver disease.
Journal
Reference
Authors
Malhotra JD, Kaufman RJ
Title
The endoplasmic reticulum and the unfolded protein response.
Journal
Reference
Authors
Wu J, Kaufman RJ
Title
From acute ER stress to physiological roles of the Unfolded Protein Response.
Journal
Reference
Authors
Repnik U, Stoka V, Turk V, Turk B
Title
Lysosomes and lysosomal cathepsins in cell death.
Journal
Reference
Authors
Cesen MH, Pegan K, Spes A, Turk B
Title
Lysosomal pathways to cell death and their therapeutic applications.
Journal
Reference
Authors
Dashzeveg N, Yoshida K
Title
Cell death decision by p53 via control of the mitochondrial membrane.
Journal
Reference
Authors
Bouchier-Hayes L, Green DR
Title
Caspase-2: the orphan caspase.
Journal
Reference
Authors
Baptiste-Okoh N, Barsotti AM, Prives C
Title
A role for caspase 2 and PIDD in the process of p53-mediated apoptosis.
Journal
Reference
Authors
Aggarwal BB
Title
Signalling pathways of the TNF superfamily: a double-edged sword.
Journal
Reference
Authors
Steelman LS, Pohnert SC, Shelton JG, Franklin RA, Bertrand FE, McCubrey JA.
Title
JAK/STAT, Raf/MEK/ERK, PI3K/Akt and BCR-ABL in cell cycle progression and leukemogenesis.
Journal
Reference
Authors
Dragovich T, Rudin CM, Thompson CB
Title
Signal transduction pathways that regulate cell survival and cell death.
Journal
Reference
Authors
Sofroniew MV, Howe CL, Mobley WC
Title
Nerve growth factor signaling, neuroprotection, and neural repair.
Journal
Reference
Authors
Kristiansen M, Ham J
Title
Programmed cell death during neuronal development: the sympathetic neuron model.
Journal
Reference
Authors
Logue SE, Martin SJ
Title
Caspase activation cascades in apoptosis.
Journal
Reference
Authors
Boivin WA, Cooper DM, Hiebert PR, Granville DJ
Title
Intracellular versus extracellular granzyme B in immunity and disease: challenging the dogma.
Journal
Reference
Authors
Cullen SP, Brunet M, Martin SJ
Title
Granzymes in cancer and immunity.
Journal
Related pathway
kmr04141 Protein processing in endoplasmic reticulum
KO pathway
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