KEGG   PATHWAY: tml03018
Entry
tml03018                    Pathway                                
Name
RNA degradation - Tuber melanosporum
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
tml03018  RNA degradation
tml03018

Other DBs
GO: 0006401
Organism
Tuber melanosporum [GN:tml]
Gene
GSTUM_00010012001  hypothetical protein [KO:K12584] [EC:3.6.1.59]
GSTUM_00007654001  hypothetical protein [KO:K07573]
GSTUM_00009327001  hypothetical protein [KO:K03679]
GSTUM_00002230001  hypothetical protein [KO:K03681]
GSTUM_00010208001  hypothetical protein [KO:K12586]
GSTUM_00002721001  hypothetical protein [KO:K12587]
GSTUM_00008655001  hypothetical protein [KO:K12589]
GSTUM_00004435001  hypothetical protein [KO:K11600]
GSTUM_00010685001  hypothetical protein [KO:K12590]
GSTUM_00010243001  hypothetical protein [KO:K03678]
GSTUM_00001081001  hypothetical protein [KO:K12585] [EC:3.1.13.-]
GSTUM_00007471001  hypothetical protein [KO:K12591] [EC:3.1.13.-]
GSTUM_00000723001  hypothetical protein [KO:K12592]
GSTUM_00010521001  hypothetical protein [KO:K03514] [EC:2.7.7.19]
GSTUM_00004689001  hypothetical protein [KO:K03514] [EC:2.7.7.19]
GSTUM_00010488001  hypothetical protein [KO:K12598] [EC:5.6.2.6]
GSTUM_00004514001  hypothetical protein [KO:K12599] [EC:5.6.2.6]
GSTUM_00005350001  hypothetical protein [KO:K12600]
GSTUM_00010494001  hypothetical protein [KO:K12601]
GSTUM_00009675001  hypothetical protein [KO:K12603] [EC:3.1.13.4]
GSTUM_00002521001  hypothetical protein [KO:K12604]
GSTUM_00001235001  hypothetical protein [KO:K12605]
GSTUM_00000748001  hypothetical protein [KO:K12580]
GSTUM_00007008001  hypothetical protein [KO:K10643] [EC:2.3.2.27]
GSTUM_00006553001  hypothetical protein [KO:K12581]
GSTUM_00000578001  hypothetical protein [KO:K12606]
GSTUM_00006126001  hypothetical protein [KO:K12608]
GSTUM_00008784001  hypothetical protein [KO:K12609]
GSTUM_00001128001  hypothetical protein [KO:K01148] [EC:3.1.13.4]
GSTUM_00011471001  hypothetical protein [KO:K13126]
GSTUM_00011472001  hypothetical protein [KO:K13126]
GSTUM_00010661001  hypothetical protein [KO:K12571] [EC:3.1.13.4]
GSTUM_00004233001  hypothetical protein [KO:K12572]
GSTUM_00010106001  hypothetical protein [KO:K12613] [EC:3.6.1.62]
GSTUM_00010952001  hypothetical protein [KO:K12615]
GSTUM_00010739001  hypothetical protein [KO:K12617]
GSTUM_00010482001  hypothetical protein [KO:K12619] [EC:3.1.13.-]
GSTUM_00001151001  hypothetical protein [KO:K12620]
GSTUM_00010142001  hypothetical protein [KO:K12622]
GSTUM_00005366001  hypothetical protein [KO:K12623]
GSTUM_00010514001  hypothetical protein [KO:K12624]
GSTUM_00011949001  hypothetical protein [KO:K12625]
GSTUM_00004232001  hypothetical protein [KO:K12626]
GSTUM_00011556001  hypothetical protein [KO:K12627]
GSTUM_00009058001  hypothetical protein [KO:K01689] [EC:4.2.1.11]
GSTUM_00009355001  hypothetical protein [KO:K00850] [EC:2.7.1.11]
GSTUM_00011349001  hypothetical protein [KO:K04043]
GSTUM_00009341001  hypothetical protein [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
tml03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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