KEGG   PATHWAY: pcw04620
Entry
pcw04620                    Pathway                                
Name
Toll-like receptor signaling pathway - Phascolarctos cinereus (koala)
Description
Specific families of pattern recognition receptors are responsible for detecting microbial pathogens and generating innate immune responses. Toll-like receptors (TLRs) are membrane-bound receptors identified as homologs of Toll in Drosophila. Mammalian TLRs are expressed on innate immune cells, such as macrophages and dendritic cells, and respond to the membrane components of Gram-positive or Gram-negative bacteria. Pathogen recognition by TLRs provokes rapid activation of innate immunity by inducing production of proinflammatory cytokines and upregulation of costimulatory molecules. TLR signaling pathways are separated into two groups: a MyD88-dependent pathway that leads to the production of proinflammatory cytokines with quick activation of NF-{kappa}B and MAPK, and a MyD88-independent pathway associated with the induction of IFN-beta and IFN-inducible genes, and maturation of dendritic cells with slow activation of NF-{kappa}B and MAPK.
Class
Organismal Systems; Immune system
Pathway map
pcw04620  Toll-like receptor signaling pathway
pcw04620

Organism
Phascolarctos cinereus (koala) [GN:pcw]
Gene
110192034  MAP3K7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
110192234  [KO:K05408]
110192261  [KO:K05408]
110192539  IL1B; interleukin-1 beta [KO:K04519]
110192620  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
110193513  RAC1; ras-related C3 botulinum toxin substrate 1 isoform X1 [KO:K04392]
110193707  CD40; tumor necrosis factor receptor superfamily member 5 isoform X1 [KO:K03160]
110193880  MAP2K4; dual specificity mitogen-activated protein kinase kinase 4 isoform X1 [KO:K04430] [EC:2.7.12.2]
110194791  TICAM2; TIR domain-containing adapter molecule 2 [KO:K05409]
110195167  IRF9; interferon regulatory factor 9 isoform X1 [KO:K04693]
110195563  RELA; transcription factor p65 isoform X1 [KO:K04735]
110196387  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
110197028  MYD88; myeloid differentiation primary response protein MyD88 [KO:K04729]
110197120  TOLLIP; toll-interacting protein isoform X1 [KO:K05402]
110197147  FADD; FAS-associated death domain protein [KO:K02373]
110197193  CASP8; caspase-8 [KO:K04398] [EC:3.4.22.61]
110197277  LY96; lymphocyte antigen 96 isoform X1 [KO:K05400]
110197337  TRAF3; TNF receptor-associated factor 3 [KO:K03174]
110197380  TICAM1; TIR domain-containing adapter molecule 1 [KO:K05842]
110197417  MAP2K2; dual specificity mitogen-activated protein kinase kinase 2 [KO:K04369] [EC:2.7.12.2]
110197555  TLR9; toll-like receptor 9 [KO:K10161]
110199045  IRAK4; interleukin-1 receptor-associated kinase 4 isoform X1 [KO:K04733] [EC:2.7.11.1]
110199211  [KO:K05415]
110199212  [KO:K05415]
110199213  [KO:K05415]
110199216  [KO:K05415]
110199218  [KO:K05415]
110199230  [KO:K05414]
110199240  [KO:K05414]
110199247  [KO:K05414]
110199249  [KO:K05414]
110199250  [KO:K05414]
110199251  [KO:K05414]
110199253  [KO:K05414]
110199254  [KO:K05414]
110199255  [KO:K05414]
110199397  TNF; tumor necrosis factor [KO:K03156]
110199476  PIK3CD; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform [KO:K00922] [EC:2.7.1.153]
110200334  IKBKG; NF-kappa-B essential modulator isoform X1 [KO:K07210]
110201152  RIPK1; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
110201183  [KO:K05414]
110201199  [KO:K05414]
110201202  [KO:K05414]
110201203  [KO:K05414]
110201533  IRAK1; interleukin-1 receptor-associated kinase 1 isoform X1 [KO:K04730] [EC:2.7.11.1]
110202112  MAP2K7; dual specificity mitogen-activated protein kinase kinase 7 isoform X1 [KO:K04431] [EC:2.7.12.2]
110202713  AKT2; RAC-beta serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
110202995  IRF7; interferon regulatory factor 7 isoform X1 [KO:K09447]
110203042  AKT1; LOW QUALITY PROTEIN: RAC-alpha serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
110204454  PIK3CA; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922] [EC:2.7.1.153]
110205475  AKT3; RAC-gamma serine/threonine-protein kinase isoform X1 [KO:K04456] [EC:2.7.11.1]
110205540  TLR5; toll-like receptor 5 isoform X1 [KO:K10168]
110205796  TAB1; TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 isoform X1 [KO:K04403]
110205920  MAPK11; LOW QUALITY PROTEIN: mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
110205921  MAPK12; mitogen-activated protein kinase 12 isoform X1 [KO:K04441] [EC:2.7.11.24]
110205943  MAP2K1; dual specificity mitogen-activated protein kinase kinase 1 [KO:K04368] [EC:2.7.12.2]
110208066  CD80; T-lymphocyte activation antigen CD80 isoform X1 [KO:K05412]
110208102  CD86; T-lymphocyte activation antigen CD86 [KO:K05413]
110208219  PIK3CB; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform isoform X1 [KO:K00922] [EC:2.7.1.153]
110208312  FOS; proto-oncogene c-Fos [KO:K04379]
110208533  TAB2; TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 isoform X1 [KO:K04404]
110209293  PIK3R3; phosphatidylinositol 3-kinase regulatory subunit gamma [KO:K02649]
110209686  NFKB1; LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit [KO:K02580]
110209710  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
110209772  CXCL10; C-X-C motif chemokine 10 [KO:K12671]
110209773  CXCL11; C-X-C motif chemokine 11 [KO:K12672]
110209774  [KO:K12671]
110209776  CXCL9; C-X-C motif chemokine 9 isoform X1 [KO:K05416]
110209794  [KO:K10030]
110209849  SPP1; osteopontin [KO:K06250]
110210080  IL12A; interleukin-12 subunit alpha [KO:K05406]
110210934  STAT2; signal transducer and activator of transcription 2 isoform X1 [KO:K11221]
110211020  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
110211269  MAP3K8; mitogen-activated protein kinase kinase kinase 8 [KO:K04415] [EC:2.7.11.25]
110211357  TLR4; toll-like receptor 4 [KO:K10160]
110211440  [KO:K05399]
110211795  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
110212027  TLR6; toll-like receptor 6 [KO:K10169]
110212378  IL12B; interleukin-12 subunit beta [KO:K05425]
110212891  JAK1; tyrosine-protein kinase JAK1 isoform X1 [KO:K11217] [EC:2.7.10.2]
110212948  JUN; transcription factor AP-1 [KO:K04448]
110213115  IL6; interleukin-6 [KO:K05405]
110213248  STAT1; signal transducer and activator of transcription 1-alpha/beta [KO:K11220]
110213633  TLR2; toll-like receptor 2 isoform X1 [KO:K10159]
110213919  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1 [KO:K04467] [EC:2.7.11.10]
110214168  TYK2; non-receptor tyrosine-protein kinase TYK2 [KO:K11219] [EC:2.7.10.2]
110214849  [KO:K05130]
110214853  IFNAR2; LOW QUALITY PROTEIN: interferon alpha/beta receptor 2 [KO:K05131]
110215167  MAPK1; LOW QUALITY PROTEIN: mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
110215514  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
110216530  PIK3R1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649]
110216709  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
110217010  [KO:K12964]
110217016  [KO:K12964]
110217326  MAPK13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
110217327  MAPK14; mitogen-activated protein kinase 14 isoform X1 [KO:K04441] [EC:2.7.11.24]
110218147  TIRAP; toll/interleukin-1 receptor domain-containing adapter protein [KO:K05403]
110219197  IRF5; interferon regulatory factor 5 isoform X1 [KO:K09446]
110219359  MAP2K6; dual specificity mitogen-activated protein kinase kinase 6 isoform X1 [KO:K04433] [EC:2.7.12.2]
110219596  IKBKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
110219913  IRF3; interferon regulatory factor 3 isoform X1 [KO:K05411]
110220566  CTSK; cathepsin K isoform X1 [KO:K01371] [EC:3.4.22.38]
110220949  CD14; monocyte differentiation antigen CD14 [KO:K04391]
110221176  [KO:K12964]
110221185  [KO:K12964]
110221203  [KO:K12964]
110221206  [KO:K12964]
110221212  [KO:K12964]
110221224  [KO:K12964]
110221231  [KO:K12964]
110221238  [KO:K12964]
110221243  [KO:K12964]
110221252  [KO:K05408]
110221256  [KO:K05408]
110221274  [KO:K05408]
110221290  [KO:K12499]
110221918  MAPK3; mitogen-activated protein kinase 3 [KO:K04371] [EC:2.7.11.24]
110222480  TLR7; toll-like receptor 7 isoform X1 [KO:K05404]
110222485  TLR8; toll-like receptor 8 [KO:K10170]
110222610  TLR3; toll-like receptor 3 isoform X1 [KO:K05401]
110223168  MAP2K3; dual specificity mitogen-activated protein kinase kinase 3 isoform X1 [KO:K04432] [EC:2.7.12.2]
110223395  PIK3R2; phosphatidylinositol 3-kinase regulatory subunit beta [KO:K02649]
Reference
  Authors
Kawai T, Akira S.
  Title
TLR signaling.
  Journal
Semin Immunol 19:24-32 (2007)
DOI:10.1016/j.smim.2006.12.004
Reference
  Authors
O'Neill LA, Bowie AG.
  Title
The family of five: TIR-domain-containing adaptors in Toll-like receptor signalling.
  Journal
Nat Rev Immunol 7:353-64 (2007)
DOI:10.1038/nri2079
Reference
  Authors
Honda K, Taniguchi T.
  Title
IRFs: master regulators of signalling by Toll-like receptors and cytosolic pattern-recognition receptors.
  Journal
Nat Rev Immunol 6:644-58 (2006)
DOI:10.1038/nri1900
Reference
  Authors
Uematsu S, Akira S.
  Title
Toll-like receptors and Type I interferons.
  Journal
J Biol Chem 282:15319-23 (2007)
DOI:10.1074/jbc.R700009200
Reference
  Authors
Akira S, Uematsu S, Takeuchi O.
  Title
Pathogen recognition and innate immunity.
  Journal
Cell 124:783-801 (2006)
DOI:10.1016/j.cell.2006.02.015
Reference
  Authors
Yamamoto M, Takeda K, Akira S.
  Title
TIR domain-containing adaptors define the specificity of TLR signaling.
  Journal
Mol Immunol 40:861-8 (2004)
DOI:10.1016/j.molimm.2003.10.006
Reference
  Authors
Means TK, Hayashi F, Smith KD, Aderem A, Luster AD.
  Title
The Toll-like receptor 5 stimulus bacterial flagellin induces maturation and chemokine production in human dendritic cells.
  Journal
J Immunol 170:5165-75 (2003)
DOI:10.4049/jimmunol.170.10.5165
Reference
  Authors
Aderem A, Smith KD.
  Title
A systems approach to dissecting immunity and inflammation.
  Journal
Semin Immunol 16:55-67 (2004)
DOI:10.1016/j.smim.2003.10.002
Reference
  Authors
Banerjee A, Gerondakis S.
  Title
Coordinating TLR-activated signaling pathways in cells of the immune system.
  Journal
Immunol Cell Biol 85:420-4 (2007)
DOI:10.1038/sj.icb.7100098
Reference
  Authors
Loniewski KJ, Patial S, Parameswaran N.
  Title
Sensitivity of TLR4- and -7-induced NF kappa B1 p105-TPL2-ERK pathway to TNF-receptor-associated-factor-6 revealed by RNAi in mouse macrophages.
  Journal
Mol Immunol 44:3715-23 (2007)
DOI:10.1016/j.molimm.2007.04.002
Reference
  Authors
Arbibe L, Mira JP, Teusch N, Kline L, Guha M, Mackman N, Godowski PJ, Ulevitch RJ, Knaus UG.
  Title
Toll-like receptor 2-mediated NF-kappa B activation requires a Rac1-dependent pathway.
  Journal
Nat Immunol 1:533-40 (2000)
DOI:10.1038/82797
Reference
  Authors
Uematsu S, Akira S.
  Title
Toll-like receptors and innate immunity.
  Journal
J Mol Med 84:712-25 (2006)
DOI:10.1007/s00109-006-0084-y
Related
pathway
pcw04010  MAPK signaling pathway
pcw04060  Cytokine-cytokine receptor interaction
pcw04064  NF-kappa B signaling pathway
pcw04120  Ubiquitin mediated proteolysis
pcw04151  PI3K-Akt signaling pathway
pcw04210  Apoptosis
pcw04610  Complement and coagulation cascades
pcw04630  JAK-STAT signaling pathway
KO pathway
ko04620   

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