KEGG   PATHWAY: psiu04120
Entry
psiu04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Phocoena sinus (vaquita)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
psiu04120  Ubiquitin mediated proteolysis
psiu04120

Other DBs
GO: 0016567
Organism
Phocoena sinus (vaquita) [GN:psiu]
Gene
116738723  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
116738729  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
116738914  ANAPC7; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 7 [KO:K03354]
116739031  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
116739113  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
116739118  UBC; polyubiquitin-C [KO:K08770]
116739338  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
116739689  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
116739818  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
116739885  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
116740013  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
116740018  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
116740154  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
116740187  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
116740440  [KO:K03873]
116740720  ELOB; elongin-B [KO:K03873]
116740798  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
116740830  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
116741013  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
116741172  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
116741450  RHOBTB1; LOW QUALITY PROTEIN: rho-related BTB domain-containing protein 1 [KO:K07868]
116741482  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
116741721  BTRC; F-box/WD repeat-containing protein 1A [KO:K03362]
116741850  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
116741906  [KO:K03358]
116742149  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
116742150  ELOC; elongin-C [KO:K03872]
116742160  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
116742480  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
116743081  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
116743345  CUL4A; cullin-4A isoform X1 [KO:K10609]
116743420  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
116743497  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
116743856  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
116744051  [KO:K12456]
116744183  [KO:K10580] [EC:2.3.2.23]
116744198  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
116744305  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
116744339  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
116744819  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
116745007  [KO:K10609]
116745065  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
116745163  UBE2Z; ubiquitin-conjugating enzyme E2 Z isoform X1 [KO:K10585] [EC:2.3.2.23]
116745356  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
116745482  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
116745485  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
116745575  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
116745765  UBB; polyubiquitin-B [KO:K04551]
116746004  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
116746172  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
116746281  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
116746400  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
116746447  [KO:K10574] [EC:2.3.2.23]
116747040  [KO:K06689] [EC:2.3.2.23]
116747043  [KO:K06689] [EC:2.3.2.23]
116747291  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
116747379  XIAP; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
116747412  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
116747642  MID1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
116747852  CUL4B; cullin-4B isoform X1 [KO:K10609]
116747986  DET1; DET1 homolog isoform X1 [KO:K10571]
116748039  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
116748140  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
116748348  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
116748387  PIAS1; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
116748561  HERC1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
116748705  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
116749210  [KO:K03868] [EC:2.3.2.32]
116749233  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
116749321  [KO:K10144] [EC:2.3.2.27]
116749390  CUL2; cullin-2 [KO:K03870]
116749482  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
116749686  [KO:K03871]
116749718  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
116750541  [KO:K02977]
116750633  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
116750659  UBA52; ubiquitin-60S ribosomal protein L40 isoform X1 [KO:K02927]
116750695  MAP3K1; LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
116750799  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
116750864  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
116750881  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
116750966  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
116751263  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
116751386  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
116751428  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
116751911  CDC23; cell division cycle protein 23 homolog [KO:K03355]
116751996  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
116752049  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
116752152  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
116752165  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
116752727  AIRE; autoimmune regulator [KO:K10603]
116752758  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
116753037  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
116753107  [KO:K20217] [EC:2.3.2.23]
116753129  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
116753251  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
116753258  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
116753481  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
116753505  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
116753878  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
116754127  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
116754155  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
116754160  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
116754169  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
116754185  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
116754248  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
116754325  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
116754441  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
116754567  [KO:K04649] [EC:2.3.2.23]
116754799  [KO:K03873]
116755137  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
116755206  FBXO2; F-box only protein 2 [KO:K10099]
116755433  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
116755461  KLHL9; kelch-like protein 9 [KO:K10447]
116755538  ANAPC2; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 2 [KO:K03349]
116755770  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
116755911  [KO:K25228]
116755959  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
116756445  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
116756558  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
116756580  CUL3; cullin-3 isoform X1 [KO:K03869]
116756837  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
116756888  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
116757470  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
116757571  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
116757663  TRAF6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
116757668  DDB1; DNA damage-binding protein 1 isoform X1 [KO:K10610]
116757742  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
116757821  [KO:K04649] [EC:2.3.2.23]
116757824  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
116757989  BIRC3; baculoviral IAP repeat-containing protein 3 isoform X1 [KO:K16060]
116758079  BIRC2; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 2 [KO:K16060]
116758237  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
116758668  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
116758814  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
116758850  CUL5; cullin-5 isoform X1 [KO:K10612]
116759055  CUL1; cullin-1 isoform X1 [KO:K03347]
116759136  [KO:K03357]
116759251  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
116759317  [KO:K03347]
116759408  [KO:K02977]
116759872  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
116760130  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
116760220  [KO:K03873]
116760577  [KO:K02977]
116760644  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
116760878  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
116761516  CUL7; cullin-7 [KO:K10613]
116761556  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
116761694  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
116762025  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
116762297  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
116762631  [KO:K03094]
116762814  CDC20; cell division cycle protein 20 homolog [KO:K03363]
116763560  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
116763621  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
116763905  [KO:K02977]
116763956  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
116764213  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
116764277  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
116764367  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
116765100  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
116765182  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
psiu03050  Proteasome
KO pathway
ko04120   

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