Entry
Name
Calcium signaling pathway - Perca flavescens (yellow perch)
Description
Ca2+ that enters the cell from the outside is a principal source of signal Ca2+. Entry of Ca2+ is driven by the presence of a large electrochemical gradient across the plasma membrane. Cells use this external source of signal Ca2+ by activating various entry channels with widely different properties. The voltage-operated channels (VOCs) are found in excitable cells and generate the rapid Ca2+ fluxes that control fast cellular processes. There are many other Ca2+-entry channels, such as the receptor-operated channels (ROCs), for example the NMDA (N-methyl-D-aspartate) receptors (NMDARs) that respond to glutamate. There also are second-messenger-operated channels (SMOCs) and store-operated channels (SOCs).
The other principal source of Ca2+ for signalling is the internal stores that are located primarily in the endoplasmic/sarcoplasmic reticulum (ER/SR), in which inositol-1,4,5-trisphosphate receptors (IP3Rs) or ryanodine receptors (RYRs) regulate the release of Ca2+. The principal activator of these channels is Ca2+ itself and this process of Ca2+-induced Ca2+ release is central to the mechanism of Ca2+ signalling. Various second messengers or modulators also control the release of Ca2+. IP3, which is generated by pathways using different isoforms of phospholipase C (PLCbeta, delta, epsilon, gamma and zeta), regulates the IP3Rs. Cyclic ADP-ribose (cADPR) releases Ca2+ via RYRs. Nicotinic acid adenine dinucleotide phosphate (NAADP) may activate a distinct Ca2+ release mechanism on separate acidic Ca2+ stores. Ca2+ release via the NAADP-sensitive mechanism may also feedback onto either RYRs or IP3Rs. cADPR and NAADP are generated by CD38. This enzyme might be sensitive to the cellular metabolism, as ATP and NADH inhibit it.
The influx of Ca2+ from the environment or release from internal stores causes a very rapid and dramatic increase in cytoplasmic calcium concentration, which has been widely exploited for signal transduction. Some proteins, such as troponin C (TnC) involved in muscle contraction, directly bind to and sense Ca2+. However, in other cases Ca2+ is sensed through intermediate calcium sensors such as calmodulin (CALM).
Class
Environmental Information Processing; Signal transduction
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Perca flavescens (yellow perch) [GN:
pflv ]
Gene
114558379 gnas; guanine nucleotide-binding protein G(s) subunit alpha isoform X1 [KO:K04632 ]
114554090 guanine nucleotide-binding protein G(s) subunit alpha-like [KO:K04632 ]
114564873 gnal; guanine nucleotide-binding protein G(olf) subunit alpha isoform X1 [KO:K04633 ]
114570710 calcium release-activated calcium channel protein 1 isoform X1 [KO:K16056 ]
114555649 calcium release-activated calcium channel protein 1-like isoform X1 [KO:K16056 ]
114549894 voltage-dependent L-type calcium channel subunit alpha-1C-like isoform X1 [KO:K04850 ]
114558551 cacna1d; voltage-dependent L-type calcium channel subunit alpha-1D [KO:K04851 ]
114553636 LOW QUALITY PROTEIN: voltage-dependent L-type calcium channel subunit alpha-1D-like [KO:K04851 ]
114558250 voltage-dependent L-type calcium channel subunit alpha-1D-like [KO:K04853 ]
114553640 dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like isoform X1 [KO:K04857 ]
114558278 dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like [KO:K04857 ]
114569401 voltage-dependent P/Q-type calcium channel subunit alpha-1A-like [KO:K04344 ]
114546705 cacna1a; voltage-dependent P/Q-type calcium channel subunit alpha-1A [KO:K04344 ]
114571315 voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1 [KO:K04849 ]
114555208 probable voltage-dependent N-type calcium channel subunit alpha-1B isoform X1 [KO:K04849 ]
114564839 voltage-dependent R-type calcium channel subunit alpha-1E-like isoform X1 [KO:K04852 ]
114561638 cacna1e; voltage-dependent R-type calcium channel subunit alpha-1E [KO:K04852 ]
114547945 cacna1g; voltage-dependent T-type calcium channel subunit alpha-1G [KO:K04854 ]
114569309 voltage-dependent T-type calcium channel subunit alpha-1I-like [KO:K04855 ]
114561173 voltage-dependent T-type calcium channel subunit alpha-1H-like isoform X1 [KO:K04855 ]
114569403 voltage-dependent T-type calcium channel subunit alpha-1I-like [KO:K04856 ]
114546896 voltage-dependent T-type calcium channel subunit alpha-1I-like [KO:K04856 ]
114560486 neuronal acetylcholine receptor subunit alpha-7-like isoform X1 [KO:K04809 ]
114563022 neuronal acetylcholine receptor subunit alpha-7-like isoform X1 [KO:K04809 ]
114555343 LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 1-like [KO:K05208 ]
114567939 LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 2-like [KO:K05212 ]
114572219 LOW QUALITY PROTEIN: lutropin-choriogonadotropic hormone receptor-like [KO:K04248 ]
114570652 guanine nucleotide-binding protein G(q) subunit alpha-like isoform X1 [KO:K04634 ]
114555122 guanine nucleotide-binding protein G(q) subunit alpha [KO:K04634 ]
114547460 guanine nucleotide-binding protein G(q) subunit alpha-like isoform X1 [KO:K04635 ]
114561099 guanine nucleotide-binding protein G(q) subunit alpha-like isoform X1 [KO:K04635 ]
114555581 guanine nucleotide-binding protein subunit alpha-14-like isoform X1 [KO:K04636 ]
114561053 guanine nucleotide-binding protein subunit alpha-11-like [KO:K04637 ]
114572978 vegfa; vascular endothelial growth factor A isoform X1 [KO:K05448 ]
114557256 vascular endothelial growth factor A-A-like isoform X1 [KO:K05448 ]
114558708 vegfd; vascular endothelial growth factor D isoform X1 [KO:K05449 ]
114564522 plcd4; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
114564790 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
114548554 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
114549434 plcd1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
114571910 LOW QUALITY PROTEIN: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1-like [KO:K05858 ] [EC:3.1.4.11 ]
114573052 plcb4; LOW QUALITY PROTEIN: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 [KO:K05858 ] [EC:3.1.4.11 ]
114572768 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1-like isoform X1 [KO:K05858 ] [EC:3.1.4.11 ]
114561436 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1-like isoform X1 [KO:K01116 ] [EC:3.1.4.11 ]
114558144 plcg1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 isoform X1 [KO:K01116 ] [EC:3.1.4.11 ]
114547748 plce1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 isoform X1 [KO:K05860 ] [EC:3.1.4.11 ]
114560804 plcz1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1 isoform X1 [KO:K05861 ] [EC:3.1.4.11 ]
114553974 inositol 1,4,5-trisphosphate receptor type 1-like isoform X1 [KO:K04958 ]
114554117 inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
114558603 LOW QUALITY PROTEIN: inositol 1,4,5-trisphosphate receptor type 3-like [KO:K04960 ]
114572485 mcu; calcium uniporter protein, mitochondrial isoform X1 [KO:K20858 ]
114566908 vdac1; voltage-dependent anion-selective channel protein 1 [KO:K05862 ]
114547960 voltage-dependent anion-selective channel protein 2-like isoform X1 [KO:K15040 ]
114570698 voltage-dependent anion-selective channel protein 2-like isoform X1 [KO:K15041 ]
114555053 voltage-dependent anion-selective channel protein 2-like isoform X1 [KO:K15041 ]
114548023 phkg2; phosphorylase b kinase gamma catalytic chain, liver/testis isoform isoform X1 [KO:K00871 ] [EC:2.7.11.19 ]
114545503 phka1; phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform isoform X1 [KO:K07190 ]
114555121 phkb; phosphorylase b kinase regulatory subunit beta isoform X1 [KO:K07190 ]
114561512 phka2; phosphorylase b kinase regulatory subunit alpha, liver isoform [KO:K07190 ]
114566210 camk2a; calcium/calmodulin-dependent protein kinase type II subunit alpha isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
114570632 camk2b; calcium/calmodulin-dependent protein kinase type II subunit beta isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
114545488 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
114566730 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform-like isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
114570715 serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform-like isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
114555314 serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform-like isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
114562882 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform-like isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
114568301 nuclear factor of activated T-cells, cytoplasmic 1-like isoform X1 [KO:K04446 ]
114557221 nuclear factor of activated T-cells, cytoplasmic 1-like [KO:K04446 ]
114558850 nfatc2; nuclear factor of activated T-cells, cytoplasmic 2 isoform X1 [KO:K17332 ]
114554096 nuclear factor of activated T-cells, cytoplasmic 2-like [KO:K17332 ]
114552936 nfatc3; nuclear factor of activated T-cells, cytoplasmic 3 isoform X1 [KO:K17333 ]
114559908 nuclear factor of activated T-cells, cytoplasmic 3-like [KO:K17333 ]
114565021 nfatc4; nuclear factor of activated T-cells, cytoplasmic 4 isoform X1 [KO:K17334 ]
114565730 calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C-like isoform X1 [KO:K13755 ] [EC:3.1.4.17 ]
114554257 pde1b; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B [KO:K13755 ] [EC:3.1.4.17 ]
114549114 pde1c; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C [KO:K13755 ] [EC:3.1.4.17 ]
114564384 pde1a; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A [KO:K13755 ] [EC:3.1.4.17 ]
Compound
C01245 D-myo-Inositol 1,4,5-trisphosphate
C06124 Sphingosine 1-phosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
C13051 Nicotinic acid adenine dinucleotide phosphate
Reference
Authors
Berridge MJ, Bootman MD, Roderick HL.
Title
Calcium signalling: dynamics, homeostasis and remodelling.
Journal
Reference
Authors
Berridge MJ, Lipp P, Bootman MD.
Title
The versatility and universality of calcium signalling.
Journal
Reference
Authors
Wang MC, Dolphin A, Kitmitto A.
Title
L-type voltage-gated calcium channels: understanding function through structure.
Journal
Reference
Authors
Ferrier GR, Howlett SE.
Title
Cardiac excitation-contraction coupling: role of membrane potential in regulation of contraction.
Journal
Reference
Authors
Keef KD, Hume JR, Zhong J.
Title
Regulation of cardiac and smooth muscle Ca(2+) channels (Ca(V)1.2a,b) by protein kinases.
Journal
Reference
Authors
Hell JW, Appleyard SM, Yokoyama CT, Warner C, Catterall WA.
Title
Differential phosphorylation of two size forms of the N-type calcium channel alpha 1 subunit which have different COOH termini.
Journal
J Biol Chem 269:7390-6 (1994)
Reference
Authors
Yunker AM.
Title
Modulation and pharmacology of low voltage-activated ("T-Type") calcium channels.
Journal
Reference
Authors
Yakel JL.
Title
Calcineurin regulation of synaptic function: from ion channels to transmitter release and gene transcription.
Journal
Reference
Authors
Fukunaga K, Miyamoto E.
Title
A working model of CaM kinase II activity in hippocampal long-term potentiation and memory.
Journal
Reference
Authors
Della Rocca GJ, van Biesen T, Daaka Y, Luttrell DK, Luttrell LM, Lefkowitz RJ.
Title
Ras-dependent mitogen-activated protein kinase activation by G protein-coupled receptors. Convergence of Gi- and Gq-mediated pathways on calcium/calmodulin, Pyk2, and Src kinase.
Journal
Reference
Authors
Furuichi T, Mikoshiba K.
Title
Inositol 1, 4, 5-trisphosphate receptor-mediated Ca2+ signaling in the brain.
Journal
Reference
Authors
Bruce JI, Straub SV, Yule DI.
Title
Crosstalk between cAMP and Ca2+ signaling in non-excitable cells.
Journal
Reference
Authors
Lee HC, Munshi C, Graeff R.
Title
Structures and activities of cyclic ADP-ribose, NAADP and their metabolic enzymes.
Journal
Reference
Authors
Crompton M.
Title
Mitochondrial intermembrane junctional complexes and their role in cell death.
Journal
Reference
Authors
Grewal SS, York RD, Stork PJ.
Title
Extracellular-signal-regulated kinase signalling in neurons.
Journal
Reference
Authors
Trushin SA, Pennington KN, Carmona EM, Asin S, Savoy DN, Billadeau DD, Paya CV.
Title
Protein kinase Calpha (PKCalpha) acts upstream of PKCtheta to activate IkappaB kinase and NF-kappaB in T lymphocytes.
Journal
Reference
Authors
Hutchins JR, Dikovskaya D, Clarke PR.
Title
Regulation of Cdc2/cyclin B activation in Xenopus egg extracts via inhibitory phosphorylation of Cdc25C phosphatase by Ca(2+)/calmodulin-dependent protein [corrected] kinase II.
Journal
Reference
Authors
Tornquist K
Title
Sphingosine 1-phosphate, sphingosine kinase and autocrine calcium signalling in thyroid cells.
Journal
Reference
Authors
Feske S
Title
Immunodeficiency due to defects in store-operated calcium entry.
Journal
Reference
Authors
Giachini FR, Lima VV, Hannan JL, Carneiro FS, Webb RC, Tostes RC
Title
STIM1/Orai1-mediated store-operated Ca2+ entry: the tip of the iceberg.
Journal
Reference
Authors
Baba Y, Kurosaki T
Title
[Regulation of store-operated calcium entry by STIM1].
Journal
Seikagaku 80:1123-8 (2008)
Reference
Authors
Galione A, Evans AM, Ma J, Parrington J, Arredouani A, Cheng X, Zhu MX
Title
The acid test: the discovery of two-pore channels (TPCs) as NAADP-gated endolysosomal Ca(2+) release channels.
Journal
Reference
Authors
Beard NA, Wei L, Dulhunty AF
Title
Ca(2+) signaling in striated muscle: the elusive roles of triadin, junctin, and calsequestrin.
Journal
Reference
Authors
Marty I
Title
Triadin regulation of the ryanodine receptor complex.
Journal
Reference
Authors
Arvanitis DA, Vafiadaki E, Sanoudou D, Kranias EG
Title
Histidine-rich calcium binding protein: the new regulator of sarcoplasmic reticulum calcium cycling.
Journal
Related pathway
pflv04070 Phosphatidylinositol signaling system
KO pathway
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