Entry
Name
Endocytosis - Xiphophorus couchianus (Monterrey platyfish)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Other DBs
Organism
Xiphophorus couchianus (Monterrey platyfish) [GN:
xco ]
Gene
114133738 rab11fip3; rab11 family-interacting protein 3 isoform X1 [KO:K12485 ]
114133814 asap2; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12488 ]
114134201 ldlrap1; low density lipoprotein receptor adapter protein 1 isoform X1 [KO:K12474 ]
114134212 vps29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
114135570 arfgap1; ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
114135592 capzb; F-actin-capping protein subunit beta isoform X1 [KO:K10365 ]
114136716 asap1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488 ]
114136721 sh3kbp1; SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470 ]
114136810 arfgef1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1 [KO:K18442 ]
114137832 rab11fip2; rab11 family-interacting protein 2 isoform X1 [KO:K12484 ]
114137855 gbf1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
114139442 rab11fip5; rab11 family-interacting protein 5 isoform X1 [KO:K12484 ]
114139599 arap3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12490 ]
114140270 agap2; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K17848 ]
114140324 acap3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12489 ]
114142908 vps26a; vacuolar protein sorting-associated protein 26A isoform X1 [KO:K18466 ]
114142987 arfgap2; ADP-ribosylation factor GTPase-activating protein 2 isoform X1 [KO:K12493 ]
114143258 vps35; vacuolar protein sorting-associated protein 35 isoform X1 [KO:K18468 ]
114143450 rufy2; RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482 ]
114143715 iqsec2; IQ motif and SEC7 domain-containing protein 2 isoform X1 [KO:K12495 ]
114143985 arfgef2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 [KO:K18442 ]
114144773 vps37a; vacuolar protein sorting-associated protein 37A [KO:K12185 ]
114144822 rab11fip4; rab11 family-interacting protein 4 isoform X1 [KO:K12485 ]
114146157 vps4b; vacuolar protein sorting-associated protein 4B isoform X1 [KO:K12196 ]
114146962 zfyve9; zinc finger FYVE domain-containing protein 9 isoform X1 [KO:K04679 ]
114148133 bin1; myc box-dependent-interacting protein 1 isoform X1 [KO:K12562 ]
114149548 smad2; mothers against decapentaplegic homolog 2 isoform X1 [KO:K04500 ]
114150573 eps15; epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472 ]
114150776 dnajc6; putative tyrosine-protein phosphatase auxilin isoform X1 [KO:K09526 ]
114151056 vps4a; vacuolar protein sorting-associated protein 4A [KO:K12196 ]
114151557 acap2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12489 ]
114152308 vps25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
114152860 vps36; vacuolar protein-sorting-associated protein 36 [KO:K12190 ]
114153282 rabep1; rab GTPase-binding effector protein 1 isoform X1 [KO:K12480 ]
114154319 vps37b; vacuolar protein sorting-associated protein 37B [KO:K12185 ]
114154831 chmp7; charged multivesicular body protein 7 isoform X1 [KO:K15053 ]
114155694 vps45; vacuolar protein sorting-associated protein 45 isoform X1 [KO:K12479 ]
114155909 pdcd6ip; programmed cell death 6-interacting protein isoform X1 [KO:K12200 ]
114156257 vps28; vacuolar protein sorting-associated protein 28 homolog [KO:K12184 ]
114157457 acap1; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 [KO:K12489 ]
114157769 arap2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K18440 ]
114158495 igf2r; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
114158582 vta1; vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199 ]
114159770 hgs; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
114160676 wasl; neural Wiskott-Aldrich syndrome protein isoform X1 [KO:K23612 ]
114161182 arfgap3; ADP-ribosylation factor GTPase-activating protein 3 [KO:K12493 ]
114161417 vps26b; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
114161657 arap1; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K18439 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
xco04060 Cytokine-cytokine receptor interaction
xco04070 Phosphatidylinositol signaling system
xco04130 SNARE interactions in vesicular transport
KO pathway