KEGG   PATHWAY: mmu04140
Entry
mmu04140                    Pathway                                
Name
Autophagy - animal - Mus musculus (house mouse)
Description
Autophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily conserved among eukaryotes and exquisitely regulated. This progress initiates with production of the autophagosome, a double-membrane intracellular structure of reticular origin that engulfs cytoplasmic contents and ultimately fuses with lysosomes for cargo degradation. Autophagy is regulated in response to extra- or intracellular stress and signals such as starvation, growth factor deprivation and ER stress. Constitutive level of autophagy plays an important role in cellular homeostasis and maintains quality control of essential cellular components.
Class
Cellular Processes; Transport and catabolism
Pathway map
mmu04140  Autophagy - animal
mmu04140

Other DBs
GO: 0006914
Organism
Mus musculus (house mouse) [GN:mmu]
Gene
100502698  Rubcn; RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein [KO:K19330]
100502841  Epg5; ectopic P-granules 5 autophagy tethering factor [KO:K23883]
100504663  Atg14; autophagy related 14 [KO:K17889]
102631952  Gm5928; predicted gene 5928 [KO:K02977]
102641752  Gm38574; predicted gene, 38574 [KO:K10802]
105787  Prkaa1; protein kinase, AMP-activated, alpha 1 catalytic subunit [KO:K07198] [EC:2.7.11.31]
108079  Prkaa2; protein kinase, AMP-activated, alpha 2 catalytic subunit [KO:K07198] [EC:2.7.11.31]
110157  Raf1; v-raf-leukemia viral oncogene 1 [KO:K04366] [EC:2.7.11.1]
11651  Akt1; thymoma viral proto-oncogene 1 [KO:K04456] [EC:2.7.11.1]
11652  Akt2; thymoma viral proto-oncogene 2 [KO:K04456] [EC:2.7.11.1]
11793  Atg5; autophagy related 5 [KO:K08339]
12015  Bad; BCL2-associated agonist of cell death [KO:K02158]
12043  Bcl2; B cell leukemia/lymphoma 2 [KO:K02161]
12048  Bcl2l1; BCL2-like 1 [KO:K04570]
12176  Bnip3; BCL2/adenovirus E1B interacting protein 3 [KO:K15464]
12211  Birc6; baculoviral IAP repeat-containing 6 [KO:K10586] [EC:2.3.2.23]
12421  Rb1cc1; RB1-inducible coiled-coil 1 [KO:K17589]
12633  Cflar; CASP8 and FADD-like apoptosis regulator [KO:K04724]
13030  Ctsb; cathepsin B [KO:K01363] [EC:3.4.22.1]
13033  Ctsd; cathepsin D [KO:K01379] [EC:3.4.23.5]
13039  Ctsl; cathepsin L [KO:K01365] [EC:3.4.22.15]
13143  Dapk2; death-associated protein kinase 2 [KO:K08803] [EC:2.7.11.1]
13144  Dapk3; death-associated protein kinase 3 [KO:K08803] [EC:2.7.11.1]
13665  Eif2s1; eukaryotic translation initiation factor 2, subunit 1 alpha [KO:K03237]
13666  Eif2ak3; eukaryotic translation initiation factor 2 alpha kinase 3 [KO:K08860] [EC:2.7.11.1]
15251  Hif1a; hypoxia inducible factor 1, alpha subunit [KO:K08268]
15289  Hmgb1; high mobility group box 1 [KO:K10802]
15461  Hras; Harvey rat sarcoma virus oncogene [KO:K02833]
16001  Igf1r; insulin-like growth factor I receptor [KO:K05087] [EC:2.7.10.1]
16333  Ins1; insulin I [KO:K04526]
16334  Ins2; insulin II [KO:K04526]
16367  Irs1; insulin receptor substrate 1 [KO:K16172]
16369  Irs3; insulin receptor substrate 3 [KO:K17445]
16370  Irs4; insulin receptor substrate 4 [KO:K17446]
16438  Itpr1; inositol 1,4,5-trisphosphate receptor 1 [KO:K04958]
16653  Kras; Kirsten rat sarcoma viral oncogene homolog [KO:K07827]
16783  Lamp1; lysosomal-associated membrane protein 1 [KO:K06528]
16784  Lamp2; lysosomal-associated membrane protein 2 [KO:K06528]
170749  Mtmr4; myotubularin related protein 4 [KO:K18082] [EC:3.1.3.48 3.1.3.64 3.1.3.95]
17274  Rab8a; RAB8A, member RAS oncogene family [KO:K07901]
17532  Mras; muscle and microspikes RAS [KO:K07831]
17966  Nbr1; NBR1, autophagy cargo receptor [KO:K17987]
18176  Nras; neuroblastoma ras oncogene [KO:K07828]
18412  Sqstm1; sequestosome 1 [KO:K14381]
18518  Igbp1; immunoglobulin (CD79A) binding protein 1 [KO:K17606]
18607  Pdpk1; 3-phosphoinositide dependent protein kinase 1 [KO:K06276] [EC:2.7.11.1]
18706  Pik3ca; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha [KO:K00922] [EC:2.7.1.153]
18707  Pik3cd; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta [KO:K00922] [EC:2.7.1.153]
18708  Pik3r1; phosphoinositide-3-kinase regulatory subunit 1 [KO:K02649]
18709  Pik3r2; phosphoinositide-3-kinase regulatory subunit 2 [KO:K02649]
18710  Pik3r3; phosphoinositide-3-kinase regulatory subunit 3 [KO:K02649]
18747  Prkaca; protein kinase, cAMP dependent, catalytic, alpha [KO:K04345] [EC:2.7.11.11]
18749  Prkacb; protein kinase, cAMP dependent, catalytic, beta [KO:K04345] [EC:2.7.11.11]
18753  Prkcd; protein kinase C, delta [KO:K06068] [EC:2.7.11.13]
18761  Prkcq; protein kinase C, theta [KO:K18052] [EC:2.7.11.13]
19052  Ppp2ca; protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform [KO:K04382] [EC:3.1.3.16]
19053  Ppp2cb; protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform [KO:K04382] [EC:3.1.3.16]
19211  Pten; phosphatase and tensin homolog [KO:K01110] [EC:3.1.3.16 3.1.3.48 3.1.3.67]
19324  Rab1a; RAB1A, member RAS oncogene family [KO:K07874]
19338  Rab33b; RAB33B, member RAS oncogene family [KO:K07920]
19349  Rab7; RAB7, member RAS oncogene family [KO:K07897]
19744  Rheb; Ras homolog enriched in brain [KO:K07208]
20130  Rras; related RAS viral (r-ras) oncogene [KO:K07829]
207565  Camkk2; calcium/calmodulin-dependent protein kinase kinase 2, beta [KO:K07359] [EC:2.7.11.17]
20869  Stk11; serine/threonine kinase 11 [KO:K07298] [EC:2.7.11.1]
21353  Tank; TRAF family member-associated Nf-kappa B activator [KO:K12650]
213948  Atg9b; autophagy related 9B [KO:K17907]
217695  Zfyve1; zinc finger, FYVE domain containing 1 [KO:K17603]
218035  Vps41; VPS41 HOPS complex subunit [KO:K20184]
218460  Wdr41; WD repeat domain 41 [KO:K23610]
22034  Traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
22084  Tsc2; TSC complex subunit 2 [KO:K07207]
22186  Uba52; ubiquitin A-52 residue ribosomal protein fusion product 1 [KO:K02927]
22187  Ubb; ubiquitin B [KO:K04551]
22190  Ubc; ubiquitin C [KO:K08770]
22241  Ulk1; unc-51 like kinase 1 [KO:K21357] [EC:2.7.11.1]
22264  Prap1; proline-rich acidic protein 1 [KO:K21250]
22320  Vamp8; vesicle-associated membrane protein 8 [KO:K08512]
225326  Pik3c3; phosphatidylinositol 3-kinase catalytic subunit type 3 [KO:K00914] [EC:2.7.1.137]
226421  Rab7b; RAB7B, member RAS oncogene family [KO:K07898]
228361  Ambra1; autophagy/beclin 1 regulator 1 [KO:K17985]
228545  Vps18; VPS18 CORVET/HOPS core subunit [KO:K20181]
235040  Atg4d; autophagy related 4D, cysteine peptidase [KO:K08342] [EC:3.4.22.-]
237782  Smcr8; Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) [KO:K23611]
23797  Akt3; thymoma viral proto-oncogene 3 [KO:K04456] [EC:2.7.11.1]
242557  Atg4c; autophagy related 4C, cysteine peptidase [KO:K08342] [EC:3.4.22.-]
245670  Rragb; Ras-related GTP binding B [KO:K16185]
245860  Atg9a; autophagy related 9A [KO:K17907]
26395  Map2k1; mitogen-activated protein kinase kinase 1 [KO:K04368] [EC:2.7.12.2]
26396  Map2k2; mitogen-activated protein kinase kinase 2 [KO:K04369] [EC:2.7.12.2]
26409  Map3k7; mitogen-activated protein kinase kinase kinase 7 [KO:K04427] [EC:2.7.11.25]
26413  Mapk1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
26414  Mapk10; mitogen-activated protein kinase 10 [KO:K04440] [EC:2.7.11.24]
26417  Mapk3; mitogen-activated protein kinase 3 [KO:K04371] [EC:2.7.11.24]
26419  Mapk8; mitogen-activated protein kinase 8 [KO:K04440] [EC:2.7.11.24]
26420  Mapk9; mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
269338  Vps39; VPS39 HOPS complex subunit [KO:K20183]
27103  Eif2ak4; eukaryotic translation initiation factor 2 alpha kinase 4 [KO:K16196] [EC:2.7.11.1]
29869  Ulk2; unc-51 like kinase 2 [KO:K08269] [EC:2.7.11.1]
329015  Atg2a; autophagy related 2A [KO:K17906]
353047  Plekhm1; pleckstrin homology domain containing, family M (with RUN domain) member 1 [KO:K23282]
384783  Irs2; insulin receptor substrate 2 [KO:K07187]
385454  Gm5396; predicted pseudogene 5396 [KO:K10802]
50540  Igbp1b; immunoglobulin (CD79A) binding protein 1b [KO:K17606]
51897  Atg13; autophagy related 13 [KO:K08331]
52187  Rragd; Ras-related GTP binding D [KO:K16186]
52440  Tax1bp1; Tax1 (human T cell leukemia virus type I) binding protein 1 [KO:K21347]
52639  Wipi1; WD repeat domain, phosphoinositide interacting 1 [KO:K17908]
53331  Stx7; syntaxin 7 [KO:K08488]
54170  Rragc; Ras-related GTP binding C [KO:K16186]
54636  Wdr45; WD repeat domain 45 [KO:K22991]
54673  Sh3glb1; SH3-domain GRB2-like B1 (endophilin) [KO:K11248]
56208  Becn1; beclin 1, autophagy related [KO:K08334]
56418  Ykt6; YKT6 v-SNARE homolog (S. cerevisiae) [KO:K08516]
56480  Tbk1; TANK-binding kinase 1 [KO:K05410] [EC:2.7.11.10]
56486  Gabarap; gamma-aminobutyric acid receptor associated protein [KO:K08341]
56716  Mlst8; MTOR associated protein, LST8 homolog (S. cerevisiae) [KO:K08266]
56717  Mtor; mechanistic target of rapamycin kinase [KO:K07203] [EC:2.7.11.1]
56790  Supt20; SPT20 SAGA complex component [KO:K21245]
57436  Gabarapl1; GABA type A receptor associated protein like 1 [KO:K08341]
58988  Rps6kb2; ribosomal protein S6 kinase, polypeptide 2 [KO:K04688] [EC:2.7.11.1]
641340  Nrbf2; nuclear receptor binding factor 2 [KO:K21246]
64930  Tsc1; TSC complex subunit 1 [KO:K07206]
66615  Atg4b; autophagy related 4B, cysteine peptidase [KO:K08342] [EC:3.4.22.-]
666468  Atg4a; autophagy related 4A, cysteine peptidase [KO:K08342] [EC:3.4.22.-]
66734  Map1lc3a; microtubule-associated protein 1 light chain 3 alpha [KO:K10435]
66795  Atg10; autophagy related 10 [KO:K17888]
66840  Wdr45b; WD repeat domain 45B [KO:K22991]
66922  Rras2; related RAS viral (r-ras) oncogene 2 [KO:K07830]
67443  Map1lc3b; microtubule-associated protein 1 light chain 3 beta [KO:K10435]
67474  Snap29; synaptosomal-associated protein 29 [KO:K08509]
67526  Atg12; autophagy related 12 [KO:K08336]
67605  Akt1s1; AKT1 substrate 1 [KO:K16184]
67727  Stx17; syntaxin 17 [KO:K08491]
67790  Rab39b; RAB39B, member RAS oncogene family [KO:K07925]
67841  Atg3; autophagy related 3 [KO:K08343]
68118  Atg101; autophagy related 101 [KO:K19730]
68441  Rraga; Ras-related GTP binding A [KO:K16185]
68728  Trp53inp2; transformation related protein 53 inducible nuclear protein 2 [KO:K21247]
69635  Dapk1; death associated protein kinase 1 [KO:K08803] [EC:2.7.11.1]
70231  Gorasp2; golgi reassembly stacking protein 2 [KO:K26797]
71648  Optn; optineurin [KO:K19946]
71732  Vps11; VPS11, CORVET/HOPS core subunit [KO:K20179]
72145  Wdfy3; WD repeat and FYVE domain containing 3 [KO:K22262]
72508  Rps6kb1; ribosomal protein S6 kinase, polypeptide 1 [KO:K04688] [EC:2.7.11.1]
73205  C9orf72; C9orf72, member of C9orf72-SMCR8 complex [KO:K23609]
73683  Atg16l2; autophagy related 16 like 2 [KO:K20868]
74244  Atg7; autophagy related 7 [KO:K08337]
74302  Mtmr3; myotubularin related protein 3 [KO:K18082] [EC:3.1.3.48 3.1.3.64 3.1.3.95]
74370  Rptor; regulatory associated protein of MTOR, complex 1 [KO:K07204]
74498  Gorasp1; golgi reassembly stacking protein 1 [KO:K26797]
74747  Ddit4; DNA-damage-inducible transcript 4 [KO:K08270]
74769  Pik3cb; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta [KO:K00922] [EC:2.7.1.153]
74781  Wipi2; WD repeat domain, phosphoinositide interacting 2 [KO:K17908]
75669  Pik3r4; phosphoinositide-3-kinase regulatory subunit 4 [KO:K08333] [EC:2.7.11.1]
75909  Vmp1; vacuole membrane protein 1 [KO:K21248]
76559  Atg2b; autophagy related 2B [KO:K17906]
76815  Calcoco2; calcium binding and coiled-coil domain 2 [KO:K21348]
77040  Atg16l1; autophagy related 16 like 1 [KO:K17890]
77573  Vps33a; VPS33A CORVET/HOPS core subunit [KO:K20182]
78294  Rps27a; ribosomal protein S27A [KO:K02977]
78610  Uvrag; UV radiation resistance associated gene [KO:K21249]
78943  Ern1; endoplasmic reticulum to nucleus signalling 1 [KO:K08852] [EC:2.7.11.1 3.1.26.-]
80743  Vps16; VSP16 CORVET/HOPS core subunit [KO:K20180]
93739  Gabarapl2; GABA type A receptor associated protein like 2 [KO:K08341]
97287  Mtmr14; myotubularin related protein 14 [KO:K18086] [EC:3.1.3.64 3.1.3.95]
97998  Deptor; DEP domain containing MTOR-interacting protein [KO:K20402]
Compound
C00035  GDP
C00044  GTP
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
Reference
PMID:15325584
  Authors
Meijer AJ, Codogno P.
  Title
Regulation and role of autophagy in mammalian cells.
  Journal
Int J Biochem Cell Biol 36:2445-62 (2004)
DOI:10.1016/j.biocel.2004.02.002
Reference
PMID:16099218
  Authors
Deretic V.
  Title
Autophagy in innate and adaptive immunity.
  Journal
Trends Immunol 26:523-8 (2005)
DOI:10.1016/j.it.2005.08.003
Reference
PMID:16200202
  Authors
Levine B, Yuan J.
  Title
Autophagy in cell death: an innocent convict?
  Journal
J Clin Invest 115:2679-88 (2005)
DOI:10.1172/JCI26390
Reference
PMID:15325588
  Authors
Tanida I, Ueno T, Kominami E.
  Title
LC3 conjugation system in mammalian autophagy.
  Journal
Int J Biochem Cell Biol 36:2503-18 (2004)
DOI:10.1016/j.biocel.2004.05.009
Reference
PMID:15928708
  Authors
Lum JJ, DeBerardinis RJ, Thompson CB.
  Title
Autophagy in metazoans: cell survival in the land of plenty.
  Journal
Nat Rev Mol Cell Biol 6:439-48 (2005)
DOI:10.1038/nrm1660
Reference
PMID:15978794
  Authors
Reggiori F, Klionsky DJ.
  Title
Autophagosomes: biogenesis from scratch?
  Journal
Curr Opin Cell Biol 17:415-22 (2005)
DOI:10.1016/j.ceb.2005.06.007
Reference
PMID:11099404
  Authors
Klionsky DJ, Emr SD.
  Title
Autophagy as a regulated pathway of cellular degradation.
  Journal
Science 290:1717-21 (2000)
DOI:10.1126/science.290.5497.1717
Reference
PMID:16125113
  Authors
Bechet D, Tassa A, Taillandier D, Combaret L, Attaix D.
  Title
Lysosomal proteolysis in skeletal muscle.
  Journal
Int J Biochem Cell Biol 37:2098-114 (2005)
DOI:10.1016/j.biocel.2005.02.029
Reference
PMID:19653858
  Authors
He C, Klionsky DJ
  Title
Regulation mechanisms and signaling pathways of autophagy.
  Journal
Annu Rev Genet 43:67-93 (2009)
DOI:10.1146/annurev-genet-102808-114910
Reference
PMID:19802558
  Authors
Yang Z, Klionsky DJ
  Title
An overview of the molecular mechanism of autophagy.
  Journal
Curr Top Microbiol Immunol 335:1-32 (2009)
DOI:10.1007/978-3-642-00302-8_1
Reference
PMID:20034776
  Authors
Yang Z, Klionsky DJ
  Title
Mammalian autophagy: core molecular machinery and signaling regulation.
  Journal
Curr Opin Cell Biol 22:124-31 (2010)
DOI:10.1016/j.ceb.2009.11.014
Reference
PMID:21187343
  Authors
Chen Y, Klionsky DJ
  Title
The regulation of autophagy - unanswered questions.
  Journal
J Cell Sci 124:161-70 (2011)
DOI:10.1242/jcs.064576
Reference
PMID:21801009
  Authors
Mizushima N, Yoshimori T, Ohsumi Y
  Title
The role of Atg proteins in autophagosome formation.
  Journal
Annu Rev Cell Dev Biol 27:107-32 (2011)
DOI:10.1146/annurev-cellbio-092910-154005
Reference
PMID:24343578
  Authors
Russell RC, Yuan HX, Guan KL
  Title
Autophagy regulation by nutrient signaling.
  Journal
Cell Res 24:42-57 (2014)
DOI:10.1038/cr.2013.166
Reference
PMID:25948417
  Authors
Noda NN, Fujioka Y
  Title
Atg1 family kinases in autophagy initiation.
  Journal
Cell Mol Life Sci 72:3083-96 (2015)
DOI:10.1007/s00018-015-1917-z
Related
pathway
mmu04010  MAPK signaling pathway
mmu04141  Protein processing in endoplasmic reticulum
mmu04142  Lysosome
mmu04150  mTOR signaling pathway
mmu04152  AMPK signaling pathway
mmu04910  Insulin signaling pathway
KO pathway
ko04140   

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