Entry
Name
Autophagy - animal - Micropterus salmoides (largemouth bass)
Description
Autophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily conserved among eukaryotes and exquisitely regulated. This progress initiates with production of the autophagosome, a double-membrane intracellular structure of reticular origin that engulfs cytoplasmic contents and ultimately fuses with lysosomes for cargo degradation. Autophagy is regulated in response to extra- or intracellular stress and signals such as starvation, growth factor deprivation and ER stress. Constitutive level of autophagy plays an important role in cellular homeostasis and maintains quality control of essential cellular components.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Other DBs
Organism
Micropterus salmoides (largemouth bass) [GN:
msam ]
Gene
119882734 si:ch211-11n16.2; zinc finger FYVE domain-containing protein 1 [KO:K17603 ]
119882851 hif1al; LOW QUALITY PROTEIN: hypoxia inducible factor 1 subunit alpha, like [KO:K08268 ]
119883088 pik3cb; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform [KO:K00922 ] [EC:2.7.1.153 ]
119883389 hmgb1b; LOW QUALITY PROTEIN: high mobility group protein B1b [KO:K10802 ]
119884899 calcoco2; calcium-binding and coiled-coil domain-containing protein 2 isoform X1 [KO:K21348 ]
119885060 wipi2; WD repeat domain phosphoinositide-interacting protein 2 isoform X1 [KO:K17908 ]
119885635 si:dkeyp-97e7.9; DEP domain-containing mTOR-interacting protein [KO:K20402 ]
119886756 map1lc3a; microtubule-associated proteins 1A/1B light chain 3A [KO:K10435 ]
119886825 atg7; ubiquitin-like modifier-activating enzyme ATG7 isoform X1 [KO:K08337 ]
119888189 map1lc3cl; microtubule-associated proteins 1A/1B light chain 3C [KO:K10435 ]
119888928 lamp2; lysosome-associated membrane glycoprotein 2 isoform X1 [KO:K06528 ]
119889076 atg2a; autophagy-related protein 2 homolog A isoform X1 [KO:K17906 ]
119889172 ern1; LOW QUALITY PROTEIN: serine/threonine-protein kinase/endoribonuclease IRE1 [KO:K08852 ] [EC:2.7.11.1 3.1.26.-]
119891226 wdfy3; WD repeat and FYVE domain-containing protein 3 isoform X1 [KO:K22262 ]
119893191 map1lc3b; microtubule-associated proteins 1A/1B light chain 3B [KO:K10435 ]
119893203 ambra1b; activating molecule in BECN1-regulated autophagy protein 1b isoform X1 [KO:K17985 ]
119894273 gabarapl2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341 ]
119895213 uvrag; UV radiation resistance-associated gene protein [KO:K21249 ]
119895396 supt20; transcription factor SPT20 homolog isoform X1 [KO:K21245 ]
119895503 vps11; vacuolar protein sorting-associated protein 11 homolog isoform X1 [KO:K20179 ]
119895758 ppp2cab; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [KO:K04382 ] [EC:3.1.3.16 ]
119896511 prkacaa; protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a isoform X1 [KO:K04345 ] [EC:2.7.11.11 ]
119897470 zgc:92606; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341 ]
119897843 deptor; DEP domain-containing mTOR-interacting protein isoform X1 [KO:K20402 ]
119898014 vps16; vacuolar protein sorting-associated protein 16 homolog [KO:K20180 ]
119899739 rptor; regulatory-associated protein of mTOR isoform X1 [KO:K07204 ]
119900224 pik3r3b; phosphoinositide-3-kinase, regulatory subunit 3b (gamma) isoform X1 [KO:K02649 ]
119900589 rubcn; run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X1 [KO:K19330 ]
119900881 map2k2a; LOW QUALITY PROTEIN: dual specificity mitogen-activated protein kinase kinase 2a [KO:K04369 ] [EC:2.7.12.2 ]
119901185 atg4b; cysteine protease ATG4B isoform X1 [KO:K08342 ] [EC:3.4.22.-]
119902003 rb1cc1; RB1-inducible coiled-coil protein 1 isoform X1 [KO:K17589 ]
119902234 pik3r2; phosphatidylinositol 3-kinase regulatory subunit beta isoform X1 [KO:K02649 ]
119904047 tank; TRAF family member-associated NF-kappa-B activator [KO:K12650 ]
119905617 pik3cd; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform [KO:K00922 ] [EC:2.7.1.153 ]
119909517 vps18; vacuolar protein sorting-associated protein 18 homolog [KO:K20181 ]
119909531 eif2s1b; eukaryotic translation initiation factor 2 subunit 1b [KO:K03237 ]
119911394 vps41; vacuolar protein sorting-associated protein 41 homolog [KO:K20184 ]
119911743 badb; BCL2 associated agonist of cell death b isoform X1 [KO:K02158 ]
119912407 zgc:158659; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922 ] [EC:2.7.1.153 ]
119914041 pik3r1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649 ]
119914424 wdr45; WD repeat domain phosphoinositide-interacting protein 4 [KO:K22991 ]
119914625 si:ch73-234b20.5; vesicle-associated membrane protein 8 [KO:K08512 ]
119914638 map1lc3c; microtubule-associated proteins 1A/1B light chain 3C [KO:K10435 ]
119914785 zgc:73226; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464 ]
119916219 plekhm1; pleckstrin homology domain-containing family M member 1 [KO:K23282 ]
119918700 wipi1; WD repeat domain phosphoinositide-interacting protein 1 isoform X1 [KO:K17908 ]
Compound
C00350 Phosphatidylethanolamine
C01194 1-Phosphatidyl-D-myo-inositol
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
Reference
Authors
Meijer AJ, Codogno P.
Title
Regulation and role of autophagy in mammalian cells.
Journal
Reference
Authors
Deretic V.
Title
Autophagy in innate and adaptive immunity.
Journal
Reference
Authors
Levine B, Yuan J.
Title
Autophagy in cell death: an innocent convict?
Journal
Reference
Authors
Tanida I, Ueno T, Kominami E.
Title
LC3 conjugation system in mammalian autophagy.
Journal
Reference
Authors
Lum JJ, DeBerardinis RJ, Thompson CB.
Title
Autophagy in metazoans: cell survival in the land of plenty.
Journal
Reference
Authors
Reggiori F, Klionsky DJ.
Title
Autophagosomes: biogenesis from scratch?
Journal
Reference
Authors
Klionsky DJ, Emr SD.
Title
Autophagy as a regulated pathway of cellular degradation.
Journal
Reference
Authors
Bechet D, Tassa A, Taillandier D, Combaret L, Attaix D.
Title
Lysosomal proteolysis in skeletal muscle.
Journal
Reference
Authors
He C, Klionsky DJ
Title
Regulation mechanisms and signaling pathways of autophagy.
Journal
Reference
Authors
Yang Z, Klionsky DJ
Title
An overview of the molecular mechanism of autophagy.
Journal
Reference
Authors
Yang Z, Klionsky DJ
Title
Mammalian autophagy: core molecular machinery and signaling regulation.
Journal
Reference
Authors
Chen Y, Klionsky DJ
Title
The regulation of autophagy - unanswered questions.
Journal
Reference
Authors
Mizushima N, Yoshimori T, Ohsumi Y
Title
The role of Atg proteins in autophagosome formation.
Journal
Reference
Authors
Russell RC, Yuan HX, Guan KL
Title
Autophagy regulation by nutrient signaling.
Journal
Reference
Authors
Noda NN, Fujioka Y
Title
Atg1 family kinases in autophagy initiation.
Journal
Related pathway
msam04141 Protein processing in endoplasmic reticulum
KO pathway