Entry
Name
Autophagy - animal - Scomber japonicus (chub mackerel)
Description
Autophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily conserved among eukaryotes and exquisitely regulated. This progress initiates with production of the autophagosome, a double-membrane intracellular structure of reticular origin that engulfs cytoplasmic contents and ultimately fuses with lysosomes for cargo degradation. Autophagy is regulated in response to extra- or intracellular stress and signals such as starvation, growth factor deprivation and ER stress. Constitutive level of autophagy plays an important role in cellular homeostasis and maintains quality control of essential cellular components.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Scomber japonicus (chub mackerel) [GN:
sjo ]
Gene
128383280 si:ch73-335l21.1; insulin receptor substrate 1-B isoform X1 [KO:K16172 ]
128360701 pik3cb; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform [KO:K00922 ] [EC:2.7.1.153 ]
128361329 pik3ca; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922 ] [EC:2.7.1.153 ]
128384054 zgc:158659; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922 ] [EC:2.7.1.153 ]
128357418 pik3cd; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform [KO:K00922 ] [EC:2.7.1.153 ]
128362253 phosphatidylinositol 3-kinase regulatory subunit gamma-like [KO:K02649 ]
128362334 phosphatidylinositol 3-kinase regulatory subunit gamma-like [KO:K02649 ]
128368529 phosphatidylinositol 3-kinase regulatory subunit gamma-like [KO:K02649 ]
128369279 pik3r2; phosphatidylinositol 3-kinase regulatory subunit beta [KO:K02649 ]
128380785 pik3r1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649 ]
128360708 hif1al; hypoxia inducible factor 1 subunit alpha, like isoform X1 [KO:K08268 ]
128380196 zgc:73226; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464 ]
128367812 rptor; regulatory-associated protein of mTOR isoform X1 [KO:K07204 ]
128355207 si:dkeyp-97e7.9; LOW QUALITY PROTEIN: DEP domain-containing mTOR-interacting protein [KO:K20402 ]
128366806 deptor; DEP domain-containing mTOR-interacting protein isoform X1 [KO:K20402 ]
128371956 ppp2cab; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [KO:K04382 ] [EC:3.1.3.16 ]
128368871 rb1cc1; RB1-inducible coiled-coil protein 1 isoform X1 [KO:K17589 ]
128380947 WD repeat domain phosphoinositide-interacting protein 1-like [KO:K17908 ]
128378249 wipi1; WD repeat domain phosphoinositide-interacting protein 1 isoform X1 [KO:K17908 ]
128378898 wipi2; WD repeat domain phosphoinositide-interacting protein 2 isoform X1 [KO:K17908 ]
128380176 wdr45; LOW QUALITY PROTEIN: WD repeat domain phosphoinositide-interacting protein 4 [KO:K22991 ]
128381770 wdr45b; WD repeat domain phosphoinositide-interacting protein 3 [KO:K22991 ]
128371480 supt20; transcription factor SPT20 homolog isoform X1 [KO:K21245 ]
128375514 c9orf72; guanine nucleotide exchange factor C9orf72 homolog [KO:K23609 ]
128367890 tank; TRAF family member-associated NF-kappa-B activator [KO:K12650 ]
128379546 prkacaa; protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a isoform X1 [KO:K04345 ] [EC:2.7.11.11 ]
128383316 badb; BCL2 associated agonist of cell death b isoform X1 [KO:K02158 ]
128375589 atg14; beclin 1-associated autophagy-related key regulator [KO:K17889 ]
128358736 ambra1b; activating molecule in BECN1-regulated autophagy protein 1B isoform X1 [KO:K17985 ]
128362128 si:ch211-260e23.9; tumor protein p53-inducible nuclear protein 2 [KO:K21247 ]
128371177 uvrag; UV radiation resistance-associated gene protein [KO:K21249 ]
128361744 rubcn; run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X1 [KO:K19330 ]
128376664 eif2s1b; eukaryotic translation initiation factor 2 subunit 1b [KO:K03237 ]
128360200 si:ch211-11n16.2; zinc finger FYVE domain-containing protein 1 [KO:K17603 ]
128354149 atg3; ubiquitin-like-conjugating enzyme ATG3 isoform X1 [KO:K08343 ]
128367955 zgc:101559; ras-related protein Rab-33B-like isoform X1 [KO:K07920 ]
128358838 gabarapl2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341 ]
128355156 gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341 ]
128355165 gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341 ]
128365888 zgc:92606; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341 ]
128362779 map1lc3cl; microtubule-associated proteins 1A/1B light chain 3C [KO:K10435 ]
128358724 map1lc3b; microtubule-associated proteins 1A/1B light chain 3B [KO:K10435 ]
128355548 map1lc3a; microtubule-associated proteins 1A/1B light chain 3A [KO:K10435 ]
128378427 map1lc3c; microtubule-associated proteins 1A/1B light chain 3C [KO:K10435 ]
128361654 atg4b; cysteine protease ATG4B isoform X1 [KO:K08342 ] [EC:3.4.22.-]
128381437 calcium-binding and coiled-coil domain-containing protein 2-like isoform X1 [KO:K21348 ]
128364440 wdfy3; LOW QUALITY PROTEIN: WD repeat and FYVE domain-containing protein 3 [KO:K22262 ]
128380299 si:ch73-234b20.5; vesicle-associated membrane protein 8 isoform X1 [KO:K08512 ]
128381916 plekhm1; pleckstrin homology domain-containing family M member 1 [KO:K23282 ]
128371683 vps11; vacuolar protein sorting-associated protein 11 homolog [KO:K20179 ]
128354256 vps16; vacuolar protein sorting-associated protein 16 homolog [KO:K20180 ]
128377394 vps18; vacuolar protein sorting-associated protein 18 homolog [KO:K20181 ]
128364566 vps33a; vacuolar protein sorting-associated protein 33A [KO:K20182 ]
128362654 lamp2; lysosome-associated membrane glycoprotein 2 isoform X1 [KO:K06528 ]
Compound
C00350 Phosphatidylethanolamine
C01194 1-Phosphatidyl-D-myo-inositol
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
Reference
Authors
Meijer AJ, Codogno P.
Title
Regulation and role of autophagy in mammalian cells.
Journal
Reference
Authors
Deretic V.
Title
Autophagy in innate and adaptive immunity.
Journal
Reference
Authors
Levine B, Yuan J.
Title
Autophagy in cell death: an innocent convict?
Journal
Reference
Authors
Tanida I, Ueno T, Kominami E.
Title
LC3 conjugation system in mammalian autophagy.
Journal
Reference
Authors
Lum JJ, DeBerardinis RJ, Thompson CB.
Title
Autophagy in metazoans: cell survival in the land of plenty.
Journal
Reference
Authors
Reggiori F, Klionsky DJ.
Title
Autophagosomes: biogenesis from scratch?
Journal
Reference
Authors
Klionsky DJ, Emr SD.
Title
Autophagy as a regulated pathway of cellular degradation.
Journal
Reference
Authors
Bechet D, Tassa A, Taillandier D, Combaret L, Attaix D.
Title
Lysosomal proteolysis in skeletal muscle.
Journal
Reference
Authors
He C, Klionsky DJ
Title
Regulation mechanisms and signaling pathways of autophagy.
Journal
Reference
Authors
Yang Z, Klionsky DJ
Title
An overview of the molecular mechanism of autophagy.
Journal
Reference
Authors
Yang Z, Klionsky DJ
Title
Mammalian autophagy: core molecular machinery and signaling regulation.
Journal
Reference
Authors
Chen Y, Klionsky DJ
Title
The regulation of autophagy - unanswered questions.
Journal
Reference
Authors
Mizushima N, Yoshimori T, Ohsumi Y
Title
The role of Atg proteins in autophagosome formation.
Journal
Reference
Authors
Russell RC, Yuan HX, Guan KL
Title
Autophagy regulation by nutrient signaling.
Journal
Reference
Authors
Noda NN, Fujioka Y
Title
Atg1 family kinases in autophagy initiation.
Journal
Related pathway
sjo04141 Protein processing in endoplasmic reticulum
KO pathway
LinkDB
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