Entry
Name
Calcium signaling pathway - Acanthopagrus latus (yellowfin seabream)
Description
Ca2+ that enters the cell from the outside is a principal source of signal Ca2+. Entry of Ca2+ is driven by the presence of a large electrochemical gradient across the plasma membrane. Cells use this external source of signal Ca2+ by activating various entry channels with widely different properties. The voltage-operated channels (VOCs) are found in excitable cells and generate the rapid Ca2+ fluxes that control fast cellular processes. There are many other Ca2+-entry channels, such as the receptor-operated channels (ROCs), for example the NMDA (N-methyl-D-aspartate) receptors (NMDARs) that respond to glutamate. There also are second-messenger-operated channels (SMOCs) and store-operated channels (SOCs).
The other principal source of Ca2+ for signalling is the internal stores that are located primarily in the endoplasmic/sarcoplasmic reticulum (ER/SR), in which inositol-1,4,5-trisphosphate receptors (IP3Rs) or ryanodine receptors (RYRs) regulate the release of Ca2+. The principal activator of these channels is Ca2+ itself and this process of Ca2+-induced Ca2+ release is central to the mechanism of Ca2+ signalling. Various second messengers or modulators also control the release of Ca2+. IP3, which is generated by pathways using different isoforms of phospholipase C (PLCbeta, delta, epsilon, gamma and zeta), regulates the IP3Rs. Cyclic ADP-ribose (cADPR) releases Ca2+ via RYRs. Nicotinic acid adenine dinucleotide phosphate (NAADP) may activate a distinct Ca2+ release mechanism on separate acidic Ca2+ stores. Ca2+ release via the NAADP-sensitive mechanism may also feedback onto either RYRs or IP3Rs. cADPR and NAADP are generated by CD38. This enzyme might be sensitive to the cellular metabolism, as ATP and NADH inhibit it.
The influx of Ca2+ from the environment or release from internal stores causes a very rapid and dramatic increase in cytoplasmic calcium concentration, which has been widely exploited for signal transduction. Some proteins, such as troponin C (TnC) involved in muscle contraction, directly bind to and sense Ca2+. However, in other cases Ca2+ is sensed through intermediate calcium sensors such as calmodulin (CALM).
Class
Environmental Information Processing; Signal transduction
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Acanthopagrus latus (yellowfin seabream) [GN:
alat ]
Gene
119031521 slc8a4a; solute carrier family 8 member 4a isoform X1 [KO:K05849 ]
119027797 slc8a4b; solute carrier family 8 member 4b isoform X1 [KO:K05849 ]
119008288 htr5ab; 5-hydroxytryptamine (serotonin) receptor 5A, genome duplicate b [KO:K04161 ]
119022184 gnas; guanine nucleotide-binding protein G(s) subunit alpha [KO:K04632 ]
119021085 guanine nucleotide-binding protein G(s) subunit alpha-like isoform X1 [KO:K04632 ]
119008535 guanine nucleotide-binding protein G(olf) subunit alpha-like isoform X1 [KO:K04633 ]
119011050 guanine nucleotide-binding protein G(olf) subunit alpha isoform X1 [KO:K04633 ]
119014564 prkacaa; protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a isoform X1 [KO:K04345 ] [EC:2.7.11.11 ]
119009903 atp2a1l; ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like isoform X1 [KO:K05853 ] [EC:7.2.2.10 ]
119029529 orai1b; calcium release-activated calcium channel protein 1 [KO:K16056 ]
119019455 calcium release-activated calcium channel protein 1-like [KO:K16056 ]
119032303 cacna1c; voltage-dependent L-type calcium channel subunit alpha-1C isoform X1 [KO:K04850 ]
119023270 cacna1db; voltage-dependent L-type calcium channel subunit alpha-1D isoform X1 [KO:K04851 ]
119021040 cacna1da; calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X1 [KO:K04851 ]
119022437 cacna1fa; voltage-dependent L-type calcium channel subunit alpha-1D [KO:K04853 ]
119023017 cacna1fb; calcium channel, voltage-dependent, L type, alpha 1F subunit isoform X1 [KO:K04853 ]
119023476 dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like [KO:K04857 ]
119020797 dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like isoform X1 [KO:K04857 ]
119016818 cacna1ab; calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X1 [KO:K04344 ]
119013820 cacna1aa; voltage-dependent P/Q-type calcium channel subunit alpha-1A isoform X1 [KO:K04344 ]
119029777 cacna1bb; voltage-dependent N-type calcium channel subunit alpha-1B isoform X1 [KO:K04849 ]
119019048 cacna1ba; calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X1 [KO:K04849 ]
119028470 voltage-dependent R-type calcium channel subunit alpha-1E isoform X1 [KO:K04852 ]
119011146 cacna1eb; voltage-dependent R-type calcium channel subunit alpha-1E isoform X1 [KO:K04852 ]
119009685 cacna1g; voltage-dependent T-type calcium channel subunit alpha-1G isoform X1 [KO:K04854 ]
119014173 cacna1ha; voltage-dependent T-type calcium channel subunit alpha-1H [KO:K04855 ]
119014463 cacna1ia; voltage-dependent T-type calcium channel subunit alpha-1I isoform X1 [KO:K04856 ]
119024399 voltage-dependent T-type calcium channel subunit alpha-1I-like isoform X1 [KO:K04856 ]
119005738 neuronal acetylcholine receptor subunit alpha-7-like isoform X1 [KO:K04809 ]
119025121 neuronal acetylcholine receptor subunit alpha-7 isoform X1 [KO:K04809 ]
119018796 neuronal acetylcholine receptor subunit alpha-7-like isoform X1 [KO:K04809 ]
119029913 grin1a; glutamate receptor ionotropic, NMDA 1a isoform X1 [KO:K05208 ]
119019741 grin1b; glutamate receptor ionotropic, NMDA 1b isoform X1 [KO:K05208 ]
119014584 grin2aa; glutamate receptor ionotropic, NMDA 2A isoform X1 [KO:K05209 ]
119020183 grin2bb; glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b isoform X1 [KO:K05210 ]
119014605 grin2ca; glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca [KO:K05211 ]
119010326 glutamate receptor ionotropic, NMDA 2C-like isoform X1 [KO:K05211 ]
119028858 grin3bb; glutamate receptor ionotropic, NMDA 3B isoform X1 [KO:K05214 ]
119034285 grin3ba; glutamate receptor ionotropic, NMDA 3B isoform X1 [KO:K05214 ]
119027827 htr2cl1; 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled-like 1 [KO:K04157 ]
119033339 lutropin-choriogonadotropic hormone receptor-like isoform X1 [KO:K04248 ]
119023896 trhr2; thyrotropin releasing hormone receptor 2 isoform X1 [KO:K04282 ]
119030309 guanine nucleotide-binding protein G(q) subunit alpha-like isoform X1 [KO:K04634 ]
119019628 guanine nucleotide-binding protein G(q) subunit alpha [KO:K04634 ]
119028320 guanine nucleotide-binding protein G(q) subunit alpha isoform X1 [KO:K04635 ]
119034345 gna11b; guanine nucleotide-binding protein subunit alpha-11b isoform X1 [KO:K04635 ]
119019063 gna14a; guanine nucleotide-binding protein subunit alpha-14 isoform X1 [KO:K04636 ]
119028443 guanine nucleotide-binding protein subunit alpha-11-like [KO:K04637 ]
119021530 platelet-derived growth factor subunit A-like isoform X1 [KO:K04359 ]
119028330 si:ch211-79m20.1; transcription factor SPT20 homolog isoform X1 [KO:K17386 ]
119007710 fgf1a; putative fibroblast growth factor 1 isoform X1 [KO:K18496 ]
119006668 vegfaa; vascular endothelial growth factor A-A isoform X1 [KO:K05448 ]
119012338 vegfab; vascular endothelial growth factor Ab isoform X1 [KO:K05448 ]
119028898 vegfc; vascular endothelial growth factor C isoform X1 [KO:K05449 ]
119029420 gdnfa; glial cell line-derived neurotrophic factor isoform X1 [KO:K05452 ]
119008476 plcd1a; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1a isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
119014598 plcd3a; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
119010901 plcd1b; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1b isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
119026139 plcd4b; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
119024782 plcg2; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 isoform X1 [KO:K05859 ] [EC:3.1.4.11 ]
119009624 plce1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 isoform X1 [KO:K05860 ] [EC:3.1.4.11 ]
119020522 inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
119021190 itpr1b; inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
119024134 itpr2; inositol 1,4,5-trisphosphate receptor type 2 isoform X1 [KO:K04959 ]
119031553 vdac1; voltage-dependent anion-selective channel protein 1 [KO:K05862 ]
119009719 voltage-dependent anion-selective channel protein 2-like [KO:K15040 ]
119033916 vdac2; voltage-dependent anion-selective channel protein 2 [KO:K15040 ]
119029867 zgc:56235; voltage-dependent anion-selective channel protein 2 isoform X1 [KO:K15041 ]
119019040 vdac3; voltage-dependent anion-selective channel protein 3 isoform X1 [KO:K15041 ]
119033670 calm2a; calmodulin 2a (phosphorylase kinase, delta) isoform X1 [KO:K02183 ]
119017658 phkb; phosphorylase b kinase regulatory subunit beta isoform X1 [KO:K07190 ]
119018506 phka2; phosphorylase b kinase regulatory subunit alpha, liver isoform isoform X1 [KO:K07190 ]
119027359 phka1a; phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform isoform X1 [KO:K07190 ]
119022218 camk2d2; calcium/calmodulin-dependent protein kinase type II delta 2 chain isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
119031491 camk2a; calcium/calmodulin-dependent protein kinase type II subunit alpha isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
119018931 camk2b1; calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 1 isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
119033328 camk2g2; calcium/calmodulin-dependent protein kinase type II subunit gamma isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
119006992 ppp3cb; serine/threonine-protein phosphatase 2B catalytic subunit beta isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
119030903 ppp3ca; serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
119027321 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
119005327 nuclear factor of activated T-cells, cytoplasmic 1-like isoform X1 [KO:K04446 ]
119017371 nfatc1; nuclear factor of activated T-cells, cytoplasmic 1 isoform X1 [KO:K04446 ]
119023362 nfatc2a; nuclear factor of activated T-cells, cytoplasmic 2 isoform X1 [KO:K17332 ]
119020662 nuclear factor of activated T-cells, cytoplasmic 2-like [KO:K17332 ]
119025118 nuclear factor of activated T-cells, cytoplasmic 3-like [KO:K17333 ]
119018730 nfatc3a; nuclear factor of activated T-cells, cytoplasmic 3 isoform X1 [KO:K17333 ]
119011686 nfatc4; nuclear factor of activated T-cells, cytoplasmic 4 isoform X1 [KO:K17334 ]
119010808 pde1cb; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1 [KO:K13755 ] [EC:3.1.4.17 ]
119025443 calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A-like isoform X1 [KO:K13755 ] [EC:3.1.4.17 ]
119021161 calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B-like isoform X1 [KO:K13755 ] [EC:3.1.4.17 ]
Compound
C01245 D-myo-Inositol 1,4,5-trisphosphate
C06124 Sphingosine 1-phosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
C13051 Nicotinic acid adenine dinucleotide phosphate
Reference
Authors
Berridge MJ, Bootman MD, Roderick HL.
Title
Calcium signalling: dynamics, homeostasis and remodelling.
Journal
Reference
Authors
Berridge MJ, Lipp P, Bootman MD.
Title
The versatility and universality of calcium signalling.
Journal
Reference
Authors
Wang MC, Dolphin A, Kitmitto A.
Title
L-type voltage-gated calcium channels: understanding function through structure.
Journal
Reference
Authors
Ferrier GR, Howlett SE.
Title
Cardiac excitation-contraction coupling: role of membrane potential in regulation of contraction.
Journal
Reference
Authors
Keef KD, Hume JR, Zhong J.
Title
Regulation of cardiac and smooth muscle Ca(2+) channels (Ca(V)1.2a,b) by protein kinases.
Journal
Reference
Authors
Hell JW, Appleyard SM, Yokoyama CT, Warner C, Catterall WA.
Title
Differential phosphorylation of two size forms of the N-type calcium channel alpha 1 subunit which have different COOH termini.
Journal
J Biol Chem 269:7390-6 (1994)
Reference
Authors
Yunker AM.
Title
Modulation and pharmacology of low voltage-activated ("T-Type") calcium channels.
Journal
Reference
Authors
Yakel JL.
Title
Calcineurin regulation of synaptic function: from ion channels to transmitter release and gene transcription.
Journal
Reference
Authors
Fukunaga K, Miyamoto E.
Title
A working model of CaM kinase II activity in hippocampal long-term potentiation and memory.
Journal
Reference
Authors
Della Rocca GJ, van Biesen T, Daaka Y, Luttrell DK, Luttrell LM, Lefkowitz RJ.
Title
Ras-dependent mitogen-activated protein kinase activation by G protein-coupled receptors. Convergence of Gi- and Gq-mediated pathways on calcium/calmodulin, Pyk2, and Src kinase.
Journal
Reference
Authors
Furuichi T, Mikoshiba K.
Title
Inositol 1, 4, 5-trisphosphate receptor-mediated Ca2+ signaling in the brain.
Journal
Reference
Authors
Bruce JI, Straub SV, Yule DI.
Title
Crosstalk between cAMP and Ca2+ signaling in non-excitable cells.
Journal
Reference
Authors
Lee HC, Munshi C, Graeff R.
Title
Structures and activities of cyclic ADP-ribose, NAADP and their metabolic enzymes.
Journal
Reference
Authors
Crompton M.
Title
Mitochondrial intermembrane junctional complexes and their role in cell death.
Journal
Reference
Authors
Grewal SS, York RD, Stork PJ.
Title
Extracellular-signal-regulated kinase signalling in neurons.
Journal
Reference
Authors
Trushin SA, Pennington KN, Carmona EM, Asin S, Savoy DN, Billadeau DD, Paya CV.
Title
Protein kinase Calpha (PKCalpha) acts upstream of PKCtheta to activate IkappaB kinase and NF-kappaB in T lymphocytes.
Journal
Reference
Authors
Hutchins JR, Dikovskaya D, Clarke PR.
Title
Regulation of Cdc2/cyclin B activation in Xenopus egg extracts via inhibitory phosphorylation of Cdc25C phosphatase by Ca(2+)/calmodulin-dependent protein [corrected] kinase II.
Journal
Reference
Authors
Tornquist K
Title
Sphingosine 1-phosphate, sphingosine kinase and autocrine calcium signalling in thyroid cells.
Journal
Reference
Authors
Feske S
Title
Immunodeficiency due to defects in store-operated calcium entry.
Journal
Reference
Authors
Giachini FR, Lima VV, Hannan JL, Carneiro FS, Webb RC, Tostes RC
Title
STIM1/Orai1-mediated store-operated Ca2+ entry: the tip of the iceberg.
Journal
Reference
Authors
Baba Y, Kurosaki T
Title
[Regulation of store-operated calcium entry by STIM1].
Journal
Seikagaku 80:1123-8 (2008)
Reference
Authors
Galione A, Evans AM, Ma J, Parrington J, Arredouani A, Cheng X, Zhu MX
Title
The acid test: the discovery of two-pore channels (TPCs) as NAADP-gated endolysosomal Ca(2+) release channels.
Journal
Reference
Authors
Beard NA, Wei L, Dulhunty AF
Title
Ca(2+) signaling in striated muscle: the elusive roles of triadin, junctin, and calsequestrin.
Journal
Reference
Authors
Marty I
Title
Triadin regulation of the ryanodine receptor complex.
Journal
Reference
Authors
Arvanitis DA, Vafiadaki E, Sanoudou D, Kranias EG
Title
Histidine-rich calcium binding protein: the new regulator of sarcoplasmic reticulum calcium cycling.
Journal
Related pathway
alat04070 Phosphatidylinositol signaling system
KO pathway
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