PATHWAY: rno04144 Help
Entry
Name
Endocytosis - Rattus norvegicus (rat)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Other DBs
Organism
Rattus norvegicus (rat) [GN:
rno ]
Gene
102546590 H2-M10.6l; patr class I histocompatibility antigen, A-126 alpha chain-like [KO:K06751 ]
108348178 Vps37c; vacuolar protein sorting-associated protein 37C isoform 1 [KO:K12185 ]
117028 Bin1; myc box-dependent-interacting protein 1 [KO:K12562 ]
117538 Wipf1; WAS/WASL-interacting protein family member 1 [KO:K19475 ]
120093125 RT1-O1l1; H-2 class I histocompatibility antigen, Q7 alpha chain-like [KO:K06751 ]
140924 Il2rg; cytokine receptor common subunit gamma precursor [KO:K05070 ]
171381 Psd; PH and SEC7 domain-containing protein 1 [KO:K12494 ]
24468 Hspa8; heat shock cognate 71 kDa protein [KO:K03283 ]
246310 Arfgap1; ADP-ribosylation factor GTPase-activating protein 1 [KO:K12492 ]
246772 Vps4a; vacuolar protein sorting-associated protein 4A [KO:K12196 ]
24747 RT1-M3-1; RT1 class Ib, locus M3-1 precursor [KO:K06751 ]
24963 Hspa1l; heat shock 70 kDa protein 1-like [KO:K03283 ]
24973 RT1-A1; RT1 class Ia, locus A1 precursor [KO:K06751 ]
24974 RT1-A2; RT1 class Ia, locus A2 precursor [KO:K06751 ]
24988 RT1-M2; RT1 class Ib, locus M2 precursor [KO:K06751 ]
25151 Igf2r; cation-independent mannose-6-phosphate receptor precursor [KO:K06564 ]
25267 Pdgfra; platelet-derived growth factor receptor alpha precursor [KO:K04363 ] [EC:2.7.10.1 ]
25479 Vps35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
25631 Smad3; mothers against decapentaplegic homolog 3 [KO:K23605 ]
25704 Il2ra; interleukin-2 receptor subunit alpha precursor [KO:K05068 ]
25718 Igf1r; insulin-like growth factor 1 receptor isoform 2 precursor [KO:K05087 ] [EC:2.7.10.1 ]
25746 Il2rb; interleukin-2 receptor subunit beta precursor [KO:K05069 ]
259242 Wipf3; WAS/WASL-interacting protein family member 3 isoform 2 [KO:K19475 ]
282834 Chmp3; charged multivesicular body protein 3 [KO:K12193 ]
287443 Acap1; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 [KO:K12489 ]
287873 Chmp6; charged multivesicular body protein 6 [KO:K12195 ]
288659 Vps37b; vacuolar protein sorting-associated protein 37B [KO:K12185 ]
288666 Vps29; vacuolar protein sorting-associated protein 29 [KO:K18467 ]
288669 Arpc3; actin-related protein 2/3 complex subunit 3 [KO:K05756 ]
290775 Vps37a; vacuolar protein sorting-associated protein 37A [KO:K12185 ]
290851 Vps36; vacuolar protein-sorting-associated protein 36 [KO:K12190 ]
292640 Vta1; vacuolar protein sorting-associated protein VTA1 homolog isoform 2 [KO:K12199 ]
292925 Tsg101; tumor susceptibility gene 101 protein [KO:K12183 ]
29324 Capza3; F-actin-capping protein subunit alpha-3 [KO:K10364 ]
29357 Smad2; mothers against decapentaplegic homolog 2 [KO:K04500 ]
29385 Cxcr2; C-X-C chemokine receptor type 2 [KO:K05050 ]
294213 RT1-M1-4; RT1 class I, locus M1, gene 4 precursor [KO:K06751 ]
296380 Arfgef2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 [KO:K18442 ]
296710 Arpc5l; actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
297173 RSA-14-44; ras homolog gene family, member A [KO:K04513 ]
297518 Arpc4; actin-related protein 2/3 complex subunit 4 [KO:K05755 ]
297995 Chmp5; charged multivesicular body protein 5 [KO:K12198 ]
298500 Smap2; stromal membrane-associated protein 2 [KO:K12486 ]
298584 Capzb; F-actin-capping protein subunit beta [KO:K10365 ]
300052 Vps28; vacuolar protein sorting-associated protein 28 homolog [KO:K12184 ]
300438 Ldlr; low-density lipoprotein receptor precursor [KO:K12473 ]
300472 Vps26b; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
301511 Arpc2; actin-related protein 2/3 complex subunit 2 [KO:K05758 ]
303002 Rab11fip3; rab11 family-interacting protein 3 [KO:K12485 ]
303337 Rab11fip4; rab11 family-interacting protein 4 [KO:K12485 ]
305367 Arap2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 [KO:K18440 ]
306380 Psd3; PH and SEC7 domain-containing protein 3 [KO:K12494 ]
307237 Pard6g; partitioning defective 6 homolog gamma [KO:K06093 ]
307500 Psd2; PH and SEC7 domain-containing protein 2 [KO:K12494 ]
307799 Pard6a; partitioning defective 6 homolog alpha isoform 1 [KO:K06093 ]
308003 Rab11fip2; rab11 family-interacting protein 2 [KO:K12484 ]
308578 Ap2a1; AP-2 complex subunit alpha-1 isoform 1 [KO:K11824 ]
309451 Gbf1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 [KO:K18443 ]
309600 RT1-CE12; RT1 class I, locus CE12 precursor [KO:K06751 ]
309603 RT1-CE1; RT1 class I, locus CE1 precursor [KO:K06751 ]
309607 RT1-CE5; RT1 class I, locus CE5 isoform 1 precursor [KO:K06751 ]
311030 Stam2; signal transducing adapter molecule 2 [KO:K04705 ]
311785 Psd4; PH and SEC7 domain-containing protein 4 [KO:K12494 ]
312502 Rab11fip5; rab11 family-interacting protein 5 [KO:K12484 ]
312915 Arfgef1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 [KO:K18442 ]
313409 Dnajc6; putative tyrosine-protein phosphatase auxilin [KO:K09526 ]
313474 Eps15; epidermal growth factor receptor substrate 15 [KO:K12472 ]
313477 Zfyve9; zinc finger FYVE domain-containing protein 9 [KO:K04679 ]
313772 Acap3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 [KO:K12489 ]
314641 Pip5k1c; phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform c [KO:K00889 ] [EC:2.7.1.68 ]
314764 Eea1; early endosome antigen 1 isoform X1 [KO:K12478 ]
314961 Asap1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 [KO:K12488 ]
315713 Pml; PML nuclear body scaffold [KO:K10054 ] [EC:2.3.2.-]
316611 Agap1; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform 1 [KO:K12491 ]
360521 Rufy1; RUN and FYVE domain-containing protein 1 [KO:K12482 ]
360620 Wipf2; WAS/WASL-interacting protein family member 2 [KO:K19475 ]
360834 Vps4b; vacuolar protein sorting-associated protein 4B [KO:K12196 ]
360854 Arpc5; actin-related protein 2/3 complex subunit 5 [KO:K05754 ]
361120 Eps15l1; epidermal growth factor receptor substrate 15-like 1 [KO:K12472 ]
361314 Arap3; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 [KO:K12490 ]
361617 Arap1; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 [KO:K18439 ]
361787 RT1-T24-1; RT1 class I, locus T24, gene 1 isoform 1 [KO:K06751 ]
361846 Vps26a; vacuolar protein sorting-associated protein 26A [KO:K18466 ]
361916 Chmp4c; charged multivesicular body protein 4c [KO:K24782 ]
362162 Arfgap2; ADP-ribosylation factor GTPase-activating protein 2 [KO:K12493 ]
362279 Pard6b; partitioning defective 6 homolog beta [KO:K06093 ]
362300 Agap3; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 [KO:K12491 ]
362719 Asap2; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 [KO:K12488 ]
363487 Chmp1b2; charged multivesicular body protein 1B2 [KO:K12197 ]
363720 Chmp2b; charged multivesicular body protein 2b [KO:K12192 ]
364419 Chmp7; charged multivesicular body protein 7 [KO:K15053 ]
365024 Chmp1a; charged multivesicular body protein 1a [KO:K12197 ]
365191 Chmp2a; charged multivesicular body protein 2a [KO:K12191 ]
365527 RT1-M6-2; RT1 class I, locus M6, gene 2 precursor [KO:K06751 ]
367858 Hrasl1; HRas proto-oncogene, GTPase like 1 [KO:K02833 ]
368153 RT1-CE7; RT1 class I, locus CE7 precursor [KO:K06751 ]
404781 Iqsec3; IQ motif and SEC7 domain-containing protein 3 [KO:K12495 ]
406194 RT1-T18; RT1 class Ib, locus T18 precursor [KO:K06751 ]
414779 RT1-CE2; RT1 class I, locus CE2 precursor [KO:K06751 ]
414783 RT1-CE4; RT1 class I, locus CE4 precursor [KO:K06751 ]
414784 RT1-T24-4; RT1 class I, locus T24, gene 4 [KO:K06751 ]
414785 RT1-M6-1; RT1 class I, locus M6, gene 1 precursor [KO:K06751 ]
414786 RT1-M1-2; RT1 class I, locus M1, gene 2 precursor [KO:K06751 ]
414788 RT1-T24-3; RT1 class I, locus T24, gene 3 [KO:K06751 ]
414789 RT1-CE15; RT1 class I, locus CE15 precursor [KO:K06751 ]
414790 RT1-CE13; RT1 class I, locus CE13 precursor [KO:K06751 ]
414791 RT1-CE11; RT1 class I, locus CE11 precursor [KO:K06751 ]
414792 RT1-CE10; RT1 class I, locus CE10 precursor [KO:K06751 ]
414793 RT1-CE3; RT1 class I, locus CE3 precursor [KO:K06751 ]
414819 RT1-CE16; RT1 class I, locus CE16 precursor [KO:K06751 ]
493810 Capza2; F-actin-capping protein subunit alpha-2 [KO:K10364 ]
498650 Rab11fip1; rab11 family-interacting protein 1 isoform 2 [KO:K12484 ]
498798 Stam; signal transducing adapter molecule 1 [KO:K04705 ]
499400 RT1-M5; RT1 class Ib, locus M5 isoform 2 precursor [KO:K06751 ]
499402 H2-Q7-ps1; LOW QUALITY PROTEIN: H-2 class I histocompatibility antigen, Q7 alpha chain-like [KO:K06751 ]
499508 Zfyve16; zinc finger FYVE domain-containing protein 16 [KO:K04679 ]
500564 Ldlrap1; low density lipoprotein receptor adapter protein 1 [KO:K12474 ]
501083 Pdcd6ip; programmed cell death 6-interacting protein [KO:K12200 ]
503165 Arfgap3; ADP-ribosylation factor GTPase-activating protein 3 [KO:K12493 ]
54190 Rabep1; rab GTPase-binding effector protein 1 [KO:K12480 ]
54227 Arpc1b; actin-related protein 2/3 complex subunit 1B [KO:K05757 ]
54258 Cxcr1; C-X-C chemokine receptor type 1 [KO:K04175 ]
56084 Hgs; hepatocyte growth factor-regulated tyrosine kinase substrate isoform 1 [KO:K12182 ]
60628 Cxcr4; C-X-C chemokine receptor type 4 [KO:K04189 ]
619382 Acap2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 [KO:K12489 ]
64465 Cdc42; cell division control protein 42 homolog [KO:K04393 ]
64516 Vps45; vacuolar protein sorting-associated protein 45 [KO:K12479 ]
65218 Agap2; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 [KO:K17848 ]
679886 Chmp4bl1; chromatin modifying protein 4B-like 1 [KO:K12194 ]
680121 Haus8l2; heat shock cognate 71 kDa protein-like [KO:K03283 ]
680842 RT1-M1-5; RT1 class I, M1, gene 5 precursor [KO:K06751 ]
681059 Vps25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
682507 Wasl; actin nucleation-promoting factor WASL [KO:K23612 ]
684122 Asap3; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12488 ]
684800 Smap1; stromal membrane-associated protein 1 isoform X1 [KO:K12486 ]
685244 Iqsec2; IQ motif and SEC7 domain-containing protein 2 isoform 2 [KO:K12495 ]
686590 Iqsec1; IQ motif and SEC7 domain-containing protein 1 isoform 1 [KO:K12495 ]
687208 Vps37d; vacuolar protein sorting-associated protein 37D [KO:K12185 ]
687758 Pip5kl1; phosphatidylinositol 4-phosphate 5-kinase-like protein 1 isoform X1 [KO:K13712 ] [EC:2.7.1.68 ]
689364 Chmp1b; charged multivesicular body protein 1b [KO:K12197 ]
690777 Rufy2; RUN and FYVE domain-containing protein 2 [KO:K12482 ]
691149 Capza1; F-actin-capping protein subunit alpha-1 [KO:K10364 ]
81824 Arpc1a; actin-related protein 2/3 complex subunit 1A [KO:K05757 ]
81918 Pard3; partitioning defective 3 homolog [KO:K04237 ]
83709 Git1; ARF GTPase-activating protein GIT1 [KO:K05737 ]
84357 Sh3kbp1; SH3 domain-containing kinase-binding protein 1 [KO:K12470 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
rno04060 Cytokine-cytokine receptor interaction
rno04070 Phosphatidylinositol signaling system
rno04130 SNARE interactions in vesicular transport
KO pathway