KEGG   PATHWAY: csab04668
Entry
csab04668                   Pathway                                
Name
TNF signaling pathway - Chlorocebus sabaeus (green monkey)
Description
Tumor necrosis factor (TNF), as a critical cytokine, can induce a wide range of intracellular signal pathways including apoptosis and cell survival as well as inflammation and immunity. Activated TNF is assembled to a homotrimer and binds to its receptors (TNFR1, TNFR2) resulting in the trimerization of TNFR1 or TNFR2. TNFR1 is expressed by nearly all cells and is the major receptor for TNF (also called TNF-alpha). In contrast, TNFR2 is expressed in limited cells such as CD4 and CD8 T lymphocytes, endothelial cells, microglia, oligodendrocytes, neuron subtypes, cardiac myocytes, thymocytes and human mesenchymal stem cells. It is the receptor for both TNF and LTA (also called TNF-beta). Upon binding of the ligand, TNFR mediates the association of some adaptor proteins such as TRADD or TRAF2, which in turn initiate recruitment of signal transducers. TNFR1 signaling induces activation of many genes, primarily controlled by two distinct pathways, NF-kappa B pathway and the MAPK cascade, or apoptosis and necroptosis. TNFR2 signaling activates NF-kappa B pathway including PI3K-dependent NF-kappa B pathway and JNK pathway leading to survival.
Class
Environmental Information Processing; Signal transduction
Pathway map
csab04668  TNF signaling pathway
csab04668

Other DBs
GO: 0033209
Organism
Chlorocebus sabaeus (green monkey) [GN:csab]
Gene
103218446  TNFRSF1A; TNF receptor superfamily member 1A [KO:K03158]
103215641  BAG4; BCL2 associated athanogene 4 [KO:K09558]
103220846  ADAM17; ADAM metallopeptidase domain 17 [KO:K06059] [EC:3.4.24.86]
103225345  RHBDF1; rhomboid 5 homolog 1 [KO:K27588]
103242992  RHBDF2; rhomboid 5 homolog 2 [KO:K27588]
103229083  FRMD8; FERM domain containing 8 [KO:K23972]
103233291  TRADD; TNFRSF1A associated via death domain [KO:K03171]
103239600  TRAF2; TNF receptor associated factor 2 [KO:K03173] [EC:2.3.2.27]
103230138  TRAF5; TNF receptor associated factor 5 [KO:K09849]
103222283  RIPK1; receptor interacting serine/threonine kinase 1 [KO:K02861] [EC:2.7.11.1]
103248332  BIRC3; baculoviral IAP repeat containing 3 [KO:K16060]
103248333  BIRC2; baculoviral IAP repeat containing 2 [KO:K16060]
103240115  MAP3K7; mitogen-activated protein kinase kinase kinase 7 [KO:K04427] [EC:2.7.11.25]
103223342  TAB1; TGF-beta activated kinase 1 (MAP3K7) binding protein 1 [KO:K04403]
103240159  TAB2; TGF-beta activated kinase 1/MAP3K7 binding protein 2 [KO:K04404]
103231769  TAB3; TGF-beta activated kinase 1/MAP3K7 binding protein 3 [KO:K12793]
103242403  MAP2K4; mitogen-activated protein kinase kinase 4 [KO:K04430] [EC:2.7.12.2]
103233823  MAP2K7; mitogen-activated protein kinase kinase 7 [KO:K04431] [EC:2.7.12.2]
103245120  MAPK9; mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
103215844  MAPK8; mitogen-activated protein kinase 8 [KO:K04440] [EC:2.7.11.24]
103235918  MAPK10; mitogen-activated protein kinase 10 [KO:K04440] [EC:2.7.11.24]
103224726  JUN; Jun proto-oncogene, AP-1 transcription factor subunit [KO:K04448]
103229352  FOS; Fos proto-oncogene, AP-1 transcription factor subunit [KO:K04379]
103248756  ITCH; itchy E3 ubiquitin protein ligase [KO:K05632] [EC:2.3.2.26]
103217632  CFLAR; CASP8 and FADD like apoptosis regulator [KO:K04724]
103242535  MAP2K3; mitogen-activated protein kinase kinase 3 [KO:K04432] [EC:2.7.12.2]
103243132  MAP2K6; mitogen-activated protein kinase kinase 6 [KO:K04433] [EC:2.7.12.2]
103221595  MAPK13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
103221596  MAPK14; mitogen-activated protein kinase 14 [KO:K04441] [EC:2.7.11.24]
103223551  MAPK11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
103223553  MAPK12; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
103244436  CEBPB; CCAAT/enhancer binding protein beta [KO:K10048]
103240310  MAP3K5; mitogen-activated protein kinase kinase kinase 5 [KO:K04426] [EC:2.7.11.25]
103243289  MAP3K14; mitogen-activated protein kinase kinase kinase 14 [KO:K04466] [EC:2.7.11.25]
103232832  IKBKG; inhibitor of nuclear factor kappa B kinase subunit gamma [KO:K07210]
103215686  IKBKB; inhibitor of nuclear factor kappa B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
103216382  CHUK; conserved helix-loop-helix ubiquitous kinase [KO:K04467] [EC:2.7.11.10]
103228823  NFKBIA; NFKB inhibitor alpha [KO:K04734]
103227364  RELA; RELA proto-oncogene, NF-kB subunit [KO:K04735]
103236047  NFKB1; nuclear factor kappa B subunit 1 [KO:K02580]
103247459  MAP3K8; mitogen-activated protein kinase kinase kinase 8 [KO:K04415] [EC:2.7.11.25]
103245451  MAP2K1; mitogen-activated protein kinase kinase 1 [KO:K04368] [EC:2.7.12.2]
103222941  MAPK1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
103230532  MAPK3; mitogen-activated protein kinase 3 [KO:K04371] [EC:2.7.11.24]
103229550  RPS6KA5; ribosomal protein S6 kinase A5 [KO:K04445] [EC:2.7.11.1]
103233227  RPS6KA4; ribosomal protein S6 kinase A4 [KO:K16510] [EC:2.7.11.1]
103217717  CREB1; cAMP responsive element binding protein 1 [KO:K05870]
103236571  CREB3L1; cAMP responsive element binding protein 3 like 1 [KO:K09048]
103223942  CREB3L4; cAMP responsive element binding protein 3 like 4 [KO:K09048]
103226974  CREB3L2; cAMP responsive element binding protein 3 like 2 [KO:K09048]
103233716  CREB3L3; cAMP responsive element binding protein 3 like 3 [KO:K09048]
103219209  CREB3; cAMP responsive element binding protein 3 [KO:K09048]
103217363  ATF2; activating transcription factor 2 [KO:K04450]
103223345  ATF4; activating transcription factor 4 [KO:K04374]
103226299  CREB5; cAMP responsive element binding protein 5 [KO:K09047]
103221718  ATF6B; activating transcription factor 6 beta [KO:K09049]
103228724  RIPK3; receptor interacting serine/threonine kinase 3 [KO:K08847] [EC:2.7.11.1]
103245758  FADD; Fas associated via death domain [KO:K02373]
103217637  CASP8; caspase 8 [KO:K04398] [EC:3.4.22.61]
103217635  CASP10; caspase 10 [KO:K04400] [EC:3.4.22.63]
103216537  CASP7; caspase 7 [KO:K04397] [EC:3.4.22.60]
103236614  CASP3; caspase 3 [KO:K02187] [EC:3.4.22.56]
103233145  MLKL; mixed lineage kinase domain like pseudokinase [KO:K08849] [EC:2.7.11.1]
103239452  PGAM5; PGAM family member 5, mitochondrial serine/threonine protein phosphatase [KO:K15637] [EC:3.1.3.16]
103218837  DNM1L; dynamin 1 like [KO:K17065] [EC:3.6.5.5]
103232722  CYLD; CYLD lysine 63 deubiquitinase [KO:K08601] [EC:3.4.19.12]
103247375  XIAP; X-linked inhibitor of apoptosis [KO:K04725] [EC:2.3.2.27]
103242710  C-C motif chemokine 2 [KO:K14624]
103242750  CCL5; C-C motif chemokine ligand 5 [KO:K12499]
103218000  CCL20; C-C motif chemokine ligand 20 [KO:K14625]
103235789  CXCL1; C-X-C motif chemokine ligand 1 [KO:K05505]
103235792  growth-regulated protein homolog gamma-like [KO:K05505]
103235798  CXCL3; C-X-C motif chemokine ligand 3 [KO:K05505]
103236682  growth-regulated alpha protein-like [KO:K05505]
103235787  CXCL6; C-X-C motif chemokine ligand 6 [KO:K05506]
103235795  C-X-C motif chemokine 5-like [KO:K05506]
103235797  CXCL5; C-X-C motif chemokine ligand 5 [KO:K05506]
103235824  CXCL10; C-X-C motif chemokine ligand 10 [KO:K12671]
103233058  CX3CL1; C-X3-C motif chemokine ligand 1 [KO:K05508]
103224269  CSF1; colony stimulating factor 1 [KO:K05453]
103244503  CSF2; colony stimulating factor 2 [KO:K05427]
103216224  FAS; Fas cell surface death receptor [KO:K04390]
103241155  IL18R1; interleukin 18 receptor 1 [KO:K05173]
103246494  JAG1; jagged 1 [KO:K06052]
103241278  IL1B; interleukin 1 beta [KO:K04519]
103226390  IL6; interleukin 6 [KO:K05405]
103236305  IL15; interleukin 15 [KO:K05433]
103223156  LIF; leukemia inhibitory factor [KO:K05419]
103234835  BCL3; B-cell CLL/lymphoma 3 [KO:K09258]
103243658  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
103240296  TNFAIP3; TNF alpha induced protein 3 [KO:K11859] [EC:3.4.19.12]
103218917  TRAF1; TNF receptor associated factor 1 [KO:K03172]
103233990  JUNB; JunB proto-oncogene, AP-1 transcription factor subunit [KO:K09028]
103248344  MMP3; matrix metallopeptidase 3 [KO:K01394] [EC:3.4.24.17]
103245064  MMP9; matrix metallopeptidase 9 [KO:K01403] [EC:3.4.24.35]
103231446  MMP14; matrix metallopeptidase 14 [KO:K07763] [EC:3.4.24.80]
103222156  EDN1; endothelin 1 [KO:K16366]
103236566  VEGFC; vascular endothelial growth factor C [KO:K05449]
103231636  VEGFD; vascular endothelial growth factor D [KO:K05449]
103232735  NOD2; nucleotide binding oligomerization domain containing 2 [KO:K10165]
103233893  ICAM1; intercellular adhesion molecule 1 [KO:K06490]
103230616  SELE; selectin E [KO:K06494]
103224362  VCAM1; vascular cell adhesion molecule 1 [KO:K06527]
103230420  PTGS2; prostaglandin-endoperoxide synthase 2 [KO:K11987] [EC:1.14.99.1]
103225587  TNFRSF1B; TNF receptor superfamily member 1B [KO:K05141]
103229744  TRAF3; TNF receptor associated factor 3 [KO:K03174]
103221212  PIK3CA; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha [KO:K00922] [EC:2.7.1.153]
103241599  PIK3CB; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta [KO:K00922] [EC:2.7.1.153]
103225637  PIK3CD; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta [KO:K00922] [EC:2.7.1.153]
103234391  PIK3R2; phosphoinositide-3-kinase regulatory subunit 2 [KO:K02649]
103224900  PIK3R3; phosphoinositide-3-kinase regulatory subunit 3 [KO:K02649]
103222594  PIK3R1; phosphoinositide-3-kinase regulatory subunit 1 [KO:K02649]
103234702  AKT2; AKT serine/threonine kinase 2 [KO:K04456] [EC:2.7.11.1]
103230869  AKT3; AKT serine/threonine kinase 3 [KO:K04456] [EC:2.7.11.1]
103229784  AKT1; AKT serine/threonine kinase 1 [KO:K04456] [EC:2.7.11.1]
103218899  DAB2IP; DAB2 interacting protein [KO:K19901]
103244513  IRF1; interferon regulatory factor 1 [KO:K09444]
103219383  IFNB1; interferon beta 1 [KO:K05415]
Reference
  Authors
Chu WM
  Title
Tumor necrosis factor.
  Journal
Cancer Lett 328:222-5 (2013)
DOI:10.1016/j.canlet.2012.10.014
Reference
  Authors
Shuh M, Bohorquez H, Loss GE Jr, Cohen AJ
  Title
Tumor Necrosis Factor-alpha: Life and Death of Hepatocytes During Liver Ischemia/Reperfusion Injury.
  Journal
Ochsner J 13:119-30 (2013)
Reference
  Authors
MacEwan DJ
  Title
TNF receptor subtype signalling: differences and cellular consequences.
  Journal
Cell Signal 14:477-92 (2002)
DOI:10.1016/S0898-6568(01)00262-5
Reference
  Authors
Newton K, Dixit VM
  Title
Signaling in innate immunity and inflammation.
  Journal
Cold Spring Harb Perspect Biol 4:a006049 (2012)
DOI:10.1101/cshperspect.a006049
Reference
  Authors
Pomerantz JL, Baltimore D
  Title
NF-kappaB activation by a signaling complex containing TRAF2, TANK and TBK1, a novel IKK-related kinase.
  Journal
EMBO J 18:6694-704 (1999)
DOI:10.1093/emboj/18.23.6694
Reference
  Authors
Naude PJ, den Boer JA, Luiten PG, Eisel UL
  Title
Tumor necrosis factor receptor cross-talk.
  Journal
FEBS J 278:888-98 (2011)
DOI:10.1111/j.1742-4658.2011.08017.x
Reference
  Authors
Faustman D, Davis M
  Title
TNF receptor 2 pathway: drug target for autoimmune diseases.
  Journal
Nat Rev Drug Discov 9:482-93 (2010)
DOI:10.1038/nrd3030
Reference
  Authors
Chan FK, Shisler J, Bixby JG, Felices M, Zheng L, Appel M, Orenstein J, Moss B, Lenardo MJ
  Title
A role for tumor necrosis factor receptor-2 and receptor-interacting protein in programmed necrosis and antiviral responses.
  Journal
J Biol Chem 278:51613-21 (2003)
DOI:10.1074/jbc.M305633200
Reference
  Authors
Lee MY, Nam KH, Choi KC
  Title
iRhoms; Its Functions and Essential Roles.
  Journal
Biomol Ther (Seoul) 24:109-14 (2016)
DOI:10.4062/biomolther.2015.149
Related
pathway
csab04010  MAPK signaling pathway
csab04064  NF-kappa B signaling pathway
csab04120  Ubiquitin mediated proteolysis
csab04151  PI3K-Akt signaling pathway
csab04210  Apoptosis
KO pathway
ko04668   
LinkDB

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