Entry
Name
Cellular senescence - Cyclopterus lumpus (lumpfish)
Description
Cellular senescence is a state of irreversible cellular arrest and can be triggered by a number of factors, such as telomere shortening, oncogene activation, irradiation, DNA damage and oxidative stress. It is characterized by enlarged flattened morphology, senescence-associated beta-galactosidase (SA-b-gal) activity, secretion of inflammatory cytokines, growth factors and matrix metalloproteinases, as part of the senescence-associated secretory phenotype (SASP). Cellular senescence is functionally associated with many biological processes including aging, tumor suppression, placental biology, embryonic development, and wound healing.
Class
Cellular Processes; Cell growth and death
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Cyclopterus lumpus (lumpfish) [GN:
clum ]
Gene
117741227 tgfb1a; transforming growth factor, beta 1a isoform X1 [KO:K13375 ]
117728311 tgfb2; LOW QUALITY PROTEIN: transforming growth factor beta-2 proprotein [KO:K13376 ]
117731879 smad3b; mothers against decapentaplegic homolog 3b isoform X1 [KO:K23605 ]
117742541 rb1; LOW QUALITY PROTEIN: retinoblastoma-associated protein [KO:K06618 ]
117732996 pik3cd; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform isoform X1 [KO:K00922 ] [EC:2.7.1.153 ]
117729144 pik3ca; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform isoform X1 [KO:K00922 ] [EC:2.7.1.153 ]
117741125 pik3cb; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform isoform X1 [KO:K00922 ] [EC:2.7.1.153 ]
117747650 phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like isoform X1 [KO:K00922 ] [EC:2.7.1.153 ]
117736025 phosphatidylinositol 3-kinase regulatory subunit alpha-like isoform X1 [KO:K02649 ]
117740185 pik3r1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649 ]
117746515 phosphatidylinositol 3-kinase regulatory subunit gamma-like isoform X1 [KO:K02649 ]
117729683 pik3r3b; phosphoinositide-3-kinase, regulatory subunit 3b (gamma) isoform X1 [KO:K02649 ]
117729698 phosphatidylinositol 3-kinase regulatory subunit gamma-like [KO:K02649 ]
117746960 pik3r2; phosphatidylinositol 3-kinase regulatory subunit beta [KO:K02649 ]
117731143 cdkn1a; cyclin-dependent kinase inhibitor 1 isoform X1 [KO:K06625 ]
117738769 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
117738770 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
117738771 H-2 class I histocompatibility antigen, Q9 alpha chain-like isoform X1 [KO:K06751 ]
117738772 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
117738775 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
117738776 H-2 class I histocompatibility antigen, Q9 alpha chain-like [KO:K06751 ]
117738777 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
117739333 H-2 class I histocompatibility antigen, Q10 alpha chain-like isoform X1 [KO:K06751 ]
117739375 H-2 class I histocompatibility antigen, Q9 alpha chain-like [KO:K06751 ]
117731173 rhebl1; ras homolog, mTORC1 binding like 1 isoform X1 [KO:K07208 ]
117730875 mybl2b; v-myb avian myeloblastosis viral oncogene homolog-like 2b [KO:K21769 ]
117730738 rassf5; ras association domain-containing protein 5 isoform X1 [KO:K08015 ]
117737302 fbxw11a; F-box/WD repeat-containing protein 11a isoform X1 [KO:K03362 ]
117746647 map2k2b; LOW QUALITY PROTEIN: dual specificity mitogen-activated protein kinase kinase 2b [KO:K04369 ] [EC:2.7.12.2 ]
117725426 growth arrest and DNA damage-inducible protein GADD45 beta-like [KO:K04402 ]
117736875 gadd45ga; growth arrest and DNA-damage-inducible, gamma a isoform X1 [KO:K04402 ]
117745927 gadd45aa; growth arrest and DNA-damage-inducible, alpha, a [KO:K04402 ]
117740530 gadd45gb.1; growth arrest and DNA-damage-inducible, gamma b, tandem duplicate 1 [KO:K04402 ]
117740536 growth arrest and DNA damage-inducible protein GADD45 gamma-like [KO:K04402 ]
117730054 growth arrest and DNA damage-inducible protein GADD45 beta-like [KO:K04402 ]
117730108 gadd45ab; growth arrest and DNA-damage-inducible, alpha, b [KO:K04402 ]
117736288 rad9b; cell cycle checkpoint control protein RAD9B isoform X1 [KO:K10995 ]
117736949 eukaryotic translation initiation factor 4E-binding protein 1-like [KO:K07205 ]
117740409 eukaryotic translation initiation factor 4E-binding protein 1-like isoform X1 [KO:K07205 ]
117741692 zgc:114130; mRNA decay activator protein ZFP36 isoform X1 [KO:K18753 ]
117733217 cacna1db; voltage-dependent L-type calcium channel subunit alpha-1D [KO:K04851 ]
117730481 LOW QUALITY PROTEIN: voltage-dependent L-type calcium channel subunit alpha-1D-like [KO:K04851 ]
117736243 trpv4; transient receptor potential cation channel subfamily V member 4 [KO:K04973 ]
117748575 trpm7; transient receptor potential cation channel subfamily M member 7 isoform X1 [KO:K04982 ] [EC:2.7.11.1 ]
117741237 calm3a; calmodulin 3a (phosphorylase kinase, delta) isoform X1 [KO:K02183 ]
117742640 ppp3ca; serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
117737855 ppp3cb; serine/threonine-protein phosphatase 2B catalytic subunit beta isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
117739288 nfatc1; nuclear factor of activated T-cells, cytoplasmic 1 isoform X1 [KO:K04446 ]
117728254 nuclear factor of activated T-cells, cytoplasmic 1-like [KO:K04446 ]
117733100 nfatc2a; nuclear factor of activated T-cells, cytoplasmic 2 isoform X1 [KO:K17332 ]
117748329 nfatc3a; nuclear factor of activated T-cells, cytoplasmic 3 isoform X1 [KO:K17333 ]
117732055 nuclear factor of activated T-cells, cytoplasmic 3-like [KO:K17333 ]
117746601 nfatc4; nuclear factor of activated T-cells, cytoplasmic 4 [KO:K17334 ]
117731168 inositol 1,4,5-trisphosphate receptor type 1-like isoform X1 [KO:K04958 ]
117730310 itpr1b; inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
117733021 itpr3; inositol 1,4,5-trisphosphate receptor type 3 isoform X1 [KO:K04960 ]
117743293 vdac1; voltage-dependent anion-selective channel protein 1 [KO:K05862 ]
117748799 voltage-dependent anion-selective channel protein 2-like isoform X1 [KO:K15040 ]
117744212 vdac2; voltage-dependent anion-selective channel protein 2 [KO:K15040 ]
117736822 vdac3; voltage-dependent anion-selective channel protein 3 isoform X1 [KO:K15041 ]
117740369 zgc:56235; voltage-dependent anion-selective channel protein 2 [KO:K15041 ]
117743902 mcu; calcium uniporter protein, mitochondrial isoform X1 [KO:K20858 ]
Compound
C05981 Phosphatidylinositol-3,4,5-trisphosphate
Reference
Authors
Munoz-Espin D, Serrano M
Title
Cellular senescence: from physiology to pathology.
Journal
Reference
Authors
Childs BG, Durik M, Baker DJ, van Deursen JM
Title
Cellular senescence in aging and age-related disease: from mechanisms to therapy.
Journal
Reference
Authors
Sharpless NE, Sherr CJ
Title
Forging a signature of in vivo senescence.
Journal
Reference
Authors
Fridlyanskaya I, Alekseenko L, Nikolsky N
Title
Senescence as a general cellular response to stress: A mini-review.
Journal
Reference
Authors
Lujambio A
Title
To clear, or not to clear (senescent cells)? That is the question.
Journal
Reference
Authors
Di Mitri D, Alimonti A
Title
Non-Cell-Autonomous Regulation of Cellular Senescence in Cancer.
Journal
Reference
Authors
Francica P, Aebersold DM, Medova M
Title
Senescence as biologic endpoint following pharmacological targeting of receptor tyrosine kinases in cancer.
Journal
Reference
Authors
Bartling B
Title
Cellular senescence in normal and premature lung aging.
Journal
Reference
Authors
Munoz-Espin D, Canamero M, Maraver A, Gomez-Lopez G, Contreras J, Murillo-Cuesta S, Rodriguez-Baeza A, Varela-Nieto I, Ruberte J, Collado M, Serrano M
Title
Programmed cell senescence during mammalian embryonic development.
Journal
Reference
Authors
Herranz N, Gallage S, Gil J
Title
TORn about SASP regulation.
Journal
Reference
Authors
Martin N, Bernard D
Title
Calcium signaling and cellular senescence.
Journal
Reference
Authors
Farfariello V, Iamshanova O, Germain E, Fliniaux I, Prevarskaya N
Title
Calcium homeostasis in cancer: A focus on senescence.
Journal
Reference
Authors
McCarthy DA, Clark RR, Bartling TR, Trebak M, Melendez JA
Title
Redox control of the senescence regulator interleukin-1alpha and the secretory phenotype.
Journal
Reference
Authors
Donninger H, Schmidt ML, Mezzanotte J, Barnoud T, Clark GJ
Title
Ras signaling through RASSF proteins.
Journal
Reference
Authors
Barnoud T, Schmidt ML, Donninger H, Clark GJ
Title
The role of the NORE1A tumor suppressor in Oncogene-Induced Senescence.
Journal
Reference
Authors
Kang C, Xu Q, Martin TD, Li MZ, Demaria M, Aron L, Lu T, Yankner BA, Campisi J, Elledge SJ
Title
The DNA damage response induces inflammation and senescence by inhibiting autophagy of GATA4.
Journal
Reference
Authors
Cao X, Li M
Title
A New Pathway for Senescence Regulation.
Journal
Reference
Authors
Gire V, Dulic V
Title
Senescence from G2 arrest, revisited.
Journal
Reference
Authors
Mowla SN, Lam EW, Jat PS
Title
Cellular senescence and aging: the role of B-MYB.
Journal
Reference
Authors
Yao H, Chung S, Hwang JW, Rajendrasozhan S, Sundar IK, Dean DA, McBurney MW, Guarente L, Gu W, Ronty M, Kinnula VL, Rahman I
Title
SIRT1 protects against emphysema via FOXO3-mediated reduction of premature senescence in mice.
Journal
Reference
Authors
Hwang JW, Yao H, Caito S, Sundar IK, Rahman I
Title
Redox regulation of SIRT1 in inflammation and cellular senescence.
Journal
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KO pathway
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