KEGG   PATHWAY: pswi04120
Entry
pswi04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Pseudoliparis swirei (Mariana hadal snailfish)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pswi04120  Ubiquitin mediated proteolysis
pswi04120

Other DBs
GO: 0016567
Organism
Pseudoliparis swirei (Mariana hadal snailfish) [GN:pswi]
Gene
130188144  cdc27; cell division cycle protein 27 homolog [KO:K03350]
130188233  [KO:K04707] [EC:2.3.2.27]
130188266  anapc2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
130188513  elob; elongin-B [KO:K03873]
130188669  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
130188867  socs1a; suppressor of cytokine signaling 1a isoform X1 [KO:K04694]
130188952  smurf2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
130188990  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
130189005  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
130189024  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
130189131  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
130189215  [KO:K10577]
130189232  birc2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
130189259  klhl13; kelch-like protein 13 [KO:K10447]
130189455  herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
130189791  fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
130190109  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
130190120  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O [KO:K10581] [EC:2.3.2.24]
130190188  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
130190236  [KO:K04694]
130190357  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
130190649  [KO:K04678] [EC:2.3.2.26]
130190758  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
130190895  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
130191784  ube2g1a; ubiquitin-conjugating enzyme E2 G1a [KO:K10575] [EC:2.3.2.23]
130191922  cblb; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
130192055  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 isoform X1 [KO:K10582] [EC:2.3.2.23]
130192387  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
130192409  nedd4a; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K10591] [EC:2.3.2.26]
130192462  ddb1; DNA damage-binding protein 1 [KO:K10610]
130192579  [KO:K10582] [EC:2.3.2.23]
130192922  cul4a; cullin-4A [KO:K10609]
130192986  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
130193269  [KO:K04706] [EC:2.3.2.-]
130193493  herc2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
130193593  uba52; ubiquitin-60S ribosomal protein L40 isoform X1 [KO:K02927]
130193595  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
130194079  pias4a; E3 SUMO-protein ligase PIAS4-A [KO:K16065] [EC:2.3.2.27]
130194220  ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
130194752  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
130195370  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
130195380  [KO:K10614] [EC:2.3.2.26]
130195508  siah1; E3 ubiquitin-protein ligase Siah1 isoform X1 [KO:K04506] [EC:2.3.2.27]
130195529  [KO:K10576] [EC:2.3.2.23]
130195540  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
130195708  ube2na; ubiquitin-conjugating enzyme E2Na [KO:K10580] [EC:2.3.2.23]
130195709  [KO:K10582] [EC:2.3.2.23]
130195722  pias1b; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
130195931  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
130195935  det1; DET1 homolog [KO:K10571]
130196112  fbxo4; F-box only protein 4 [KO:K10291]
130196126  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
130196137  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
130196158  [KO:K07868]
130196449  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
130196492  ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
130196494  rhobtb4; rho related BTB domain containing 4 isoform X1 [KO:K07868]
130196504  ubox5; RING finger protein 37 isoform X1 [KO:K10600]
130196564  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
130196723  ube2l3b; ubiquitin-conjugating enzyme E2 L3b [KO:K04552] [EC:2.3.2.23]
130196728  pias2; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
130196846  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
130197062  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
130197175  [KO:K10575] [EC:2.3.2.23]
130197245  [KO:K03363]
130197718  cdc34b; cell division cycle 34 homolog (S. cerevisiae) b [KO:K02207] [EC:2.3.2.23]
130197816  fzr1a; fizzy/cell division cycle 20 related 1a [KO:K03364]
130197827  [KO:K20217] [EC:2.3.2.23]
130197868  [KO:K20217] [EC:2.3.2.23]
130197972  cdc20; cell division cycle protein 20 homolog [KO:K03363]
130198099  cop1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
130198154  [KO:K03869]
130198330  fzr1b; fizzy-related protein homolog [KO:K03364]
130199059  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
130199253  birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
130199322  [KO:K10686] [EC:6.2.1.64]
130199351  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
130199456  itchb; itchy E3 ubiquitin protein ligase b [KO:K05632] [EC:2.3.2.26]
130200125  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
130200126  [KO:K10597] [EC:2.3.2.27]
130200682  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
130200683  ube2nb; ubiquitin-conjugating enzyme E2Nb [KO:K10580] [EC:2.3.2.23]
130200788  mdm2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
130201414  keap1a; kelch-like ECH-associated protein 1A [KO:K10456]
130201677  [KO:K06689] [EC:2.3.2.23]
130202916  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
130202937  ube2al; ubiquitin conjugating enzyme E2 A, like [KO:K10573] [EC:2.3.2.23]
130203285  ube2d1b; ubiquitin-conjugating enzyme E2 D1b [KO:K06689] [EC:2.3.2.23]
130203379  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
130203626  [KO:K04696]
130203754  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
130203903  ube2ib; SUMO-conjugating enzyme UBC9-A isoform X1 [KO:K10577]
130204091  [KO:K03873]
130204465  [KO:K08285] [EC:2.3.2.27]
130204633  [KO:K10587] [EC:2.3.2.26]
130204726  ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
130204910  [KO:K10594] [EC:2.3.2.26]
130204944  mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
130204966  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
130205010  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
130205033  ube2g1b; ubiquitin-conjugating enzyme E2G 1b [KO:K10575] [EC:2.3.2.23]
130205111  skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
130205298  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
130205351  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
130205918  ube2wb; probable ubiquitin-conjugating enzyme E2 W-B isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
130205957  [KO:K03347]
130206074  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
130206095  [KO:K03872]
130206419  [KO:K05633] [EC:2.3.2.26]
130206517  cul2; cullin-2 [KO:K03870]
130206819  [KO:K06689] [EC:2.3.2.23]
130206828  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
130206889  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
130207089  cdc16; cell division cycle protein 16 homolog [KO:K03353]
130207186  birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
130207323  herc4; probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
130207718  itcha; itchy E3 ubiquitin protein ligase a [KO:K05632] [EC:2.3.2.26]
130207908  uba7; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
130207913  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
130207935  fbxo2; F-box only protein 2 isoform X1 [KO:K10099]
130207973  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
130208263  vhl; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
130208335  si:rp71-68n21.9; kelch-like protein 9 [KO:K10447]
130208759  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
130209211  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
130209344  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
130209354  [KO:K06689] [EC:2.3.2.23]
130209399  prpf19; pre-mRNA-processing factor 19 isoform X1 [KO:K10599] [EC:2.3.2.27]
130209561  fbxw11a; F-box and WD repeat domain-containing 11-A isoform X1 [KO:K03362]
130209640  ube2ka; ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
130209679  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
130209873  cdc23; cell division cycle protein 23 homolog [KO:K03355]
130209930  cul4b; cullin-4B [KO:K10609]
130210120  xiap; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
130210651  [KO:K10612]
130210736  rnf7; RING-box protein 2 [KO:K10611]
130210994  ube4a; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
130210995  cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
130211296  skp1; S-phase kinase-associated protein 1 [KO:K03094]
130211344  ube2b; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
130211366  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
130211374  cul3b; cullin-3b [KO:K03869]
130211385  anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
130212216  [KO:K10260]
130212249  anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
130212611  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
130212801  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
130212873  cblc; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
130212923  [KO:K20217] [EC:2.3.2.23]
130212926  [KO:K20217] [EC:2.3.2.23]
130213288  [KO:K10602] [EC:2.3.2.27]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
pswi03050  Proteasome
KO pathway
ko04120   

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