KEGG   COMPOUND: C00037
Entry
C00037                      Compound                               
Name
Glycine;
Aminoacetic acid;
Gly
Formula
C2H5NO2
Exact mass
75.0320
Mol weight
75.07
Structure
Remark
Same as: D00011
Reaction
R00364 R00365 R00366 R00367 R00368 R00369 R00371 R00372
R00373 R00374 R00395 R00478 R00497 R00565 R00588 R00610
R00611 R00652 R00751 R00775 R00830 R00899 R00945 R01221
R01424 R01723 R01766 R01957 R02452 R02551 R02729 R03121
R03284 R03425 R03579 R03654 R03718 R03956 R03975 R04144
R04486 R04777 R04951 R05055 R05704 R05835 R05841 R06171
R07226 R07463 R08195 R08196 R08252 R08701 R08744 R09099
R09717 R09718 R10060 R10062 R10179 R10685 R10722 R10908
R10994 R11664 R12026 R12514 R12692 R12693 R12694 R12721
R12723 R12941 R12967 R13029 R13038
Pathway
map00120  Primary bile acid biosynthesis
map00230  Purine metabolism
map00260  Glycine, serine and threonine metabolism
map00310  Lysine degradation
map00440  Phosphonate and phosphinate metabolism
map00460  Cyanoamino acid metabolism
map00470  D-Amino acid metabolism
map00480  Glutathione metabolism
map00630  Glyoxylate and dicarboxylate metabolism
map00680  Methane metabolism
map00730  Thiamine metabolism
map00785  Lipoic acid metabolism
map00860  Porphyrin metabolism
map00970  Aminoacyl-tRNA biosynthesis
map01060  Biosynthesis of plant secondary metabolites
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01120  Microbial metabolism in diverse environments
map01200  Carbon metabolism
map01230  Biosynthesis of amino acids
map01240  Biosynthesis of cofactors
map01502  Vancomycin resistance
map02010  ABC transporters
map02026  Biofilm formation - Escherichia coli
map04080  Neuroactive ligand-receptor interaction
map04721  Synaptic vesicle cycle
map04974  Protein digestion and absorption
map04978  Mineral absorption
map05230  Central carbon metabolism in cancer
Module
M00346  Formaldehyde assimilation, serine pathway
M00532  Photorespiration
M00621  Glycine cleavage system
M00868  Heme biosynthesis, animals and fungi, glycine => heme
M00895  Thiamine biosynthesis, prokaryotes, AIR (+ DXP/glycine) => TMP/TPP
M00896  Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP
M00897  Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP
M00898  Thiamine biosynthesis, pyridoxal-5P => TMP/thiamine/TPP
M00974  Betaine metabolism, animals, betaine => glycine
M00975  Betaine degradation, bacteria, betaine => pyruvate
Network
nt06011  Heme biosynthesis
nt06032  Lipoic acid metabolism
nt06033  Glycine, serine and arginine metabolism
Enzyme
1.4.1.1         1.4.1.10        1.4.1.27        1.4.2.1         
1.4.3.3         1.4.3.19        1.4.4.2         1.4.99.5        
1.5.1.22        1.5.3.1         1.5.3.24        1.5.7.3         
1.5.8.3         1.13.11.78      1.21.4.2        2.1.1.20        
2.1.1.156       2.1.1.162       2.1.2.1         2.1.2.4         
2.1.4.1         2.3.1.13        2.3.1.29        2.3.1.37        
2.3.1.65        2.3.1.71        2.3.1.192       2.3.1.-         
2.3.2.15        2.3.2.-         2.4.2.59        2.4.2.60        
2.6.1.4         2.6.1.35        2.6.1.44        2.6.1.45        
2.6.1.60        2.6.1.63        2.6.1.73        2.6.1.96        
2.6.1.112       3.4.11.1        3.4.11.2        3.4.11.23       
3.4.13.23       3.4.13.-        3.4.17.25       3.5.1.24        
3.5.1.32        3.5.1.58        3.5.1.71        3.5.3.2         
4.1.2.5         4.1.2.26        4.1.2.42        4.1.2.48        
4.1.2.49        4.1.2.-         4.1.3.14        4.1.3.41        
4.3.2.11        6.1.1.14        6.2.1.66        6.3.2.3         
6.3.4.13
 » show all
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00037  Glycine (Gly)
 Hormones and transmitters
  Neurotransmitters
   Amino acids
    C00037  Glycine
Anatomical Therapeutic Chemical (ATC) classification [BR:br08303]
 B BLOOD AND BLOOD FORMING ORGANS
  B05 BLOOD SUBSTITUTES AND PERFUSION SOLUTIONS
   B05C IRRIGATING SOLUTIONS
    B05CX Other irrigating solutions
     B05CX03 Glycine
      D00011  Glycine (JP18/USP) <US>
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   Glycine
    D00011  Glycine (JP18/USP)
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D00011  Glycine
Other DBs
CAS: 56-40-6
PubChem: 3339
ChEBI: 15428
KNApSAcK: C00001361
PDB-CCD: GLY[PDBj]
3DMET: B01136
NIKKAJI: J1.163K
LinkDB
KCF data

ATOM        5
            1   C6a C    24.9184  -17.1304
            2   C1b C    26.0707  -17.8870
            3   O6a O    23.6903  -17.8231
            4   O6a O    24.9418  -15.7279
            5   N1a N    27.2837  -17.2772
BOND        4
            1     1   2 1
            2     1   3 1
            3     1   4 2
            4     2   5 1

» Japanese version

KEGG   COMPOUND: C00041
Entry
C00041                      Compound                               
Name
L-Alanine;
L-2-Aminopropionic acid;
L-alpha-Alanine
Formula
C3H7NO2
Exact mass
89.0477
Mol weight
89.09
Structure
Remark
Same as: D00012
Reaction
R00258 R00369 R00396 R00397 R00398 R00400 R00401 R00453
R00576 R00585 R00692 R00863 R00907 R00987 R01215 R01261
R01712 R02050 R02271 R02293 R02668 R02970 R03001 R03038
R03193 R03210 R03502 R03599 R03854 R03936 R04112 R04152
R04187 R05652 R07460 R08197 R08714 R08872 R09048 R09254
R10124 R10178 R10180 R10992 R11038 R11064 R11528 R11583
R12343 R12417 R12419 R12622 R12725 R12727
Pathway
map00250  Alanine, aspartate and glutamate metabolism
map00270  Cysteine and methionine metabolism
map00430  Taurine and hypotaurine metabolism
map00450  Selenocompound metabolism
map00470  D-Amino acid metabolism
map00710  Carbon fixation by Calvin cycle
map00970  Aminoacyl-tRNA biosynthesis
map00997  Biosynthesis of various other secondary metabolites
map01060  Biosynthesis of plant secondary metabolites
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01120  Microbial metabolism in diverse environments
map01200  Carbon metabolism
map01210  2-Oxocarboxylic acid metabolism
map01230  Biosynthesis of amino acids
map01502  Vancomycin resistance
map02010  ABC transporters
map04122  Sulfur relay system
map04974  Protein digestion and absorption
map04978  Mineral absorption
map05230  Central carbon metabolism in cancer
Module
M00171  C4-dicarboxylic acid cycle, NAD - malic enzyme type
M00901  Fumiquinazoline biosynthesis, tryptophan + alanine + anthranilate => fumiquinazoline
Enzyme
1.4.1.1         1.5.1.17        2.3.1.47        2.6.1.2         
2.6.1.12        2.6.1.15        2.6.1.18        2.6.1.30        
2.6.1.37        2.6.1.40        2.6.1.41        2.6.1.43        
2.6.1.44        2.6.1.46        2.6.1.47        2.6.1.51        
2.6.1.56        2.6.1.58        2.6.1.66        2.6.1.71        
2.6.1.77        2.6.1.84        2.6.1.96        2.6.1.99        
2.6.1.108       2.6.1.113       2.6.1.115       2.6.1.119       
2.8.1.7         2.8.1.9         3.5.1.28        3.7.1.3         
4.1.1.12        4.1.1.64        4.4.1.16        5.1.1.1         
6.1.1.7         6.2.1.67        6.3.2.8         6.3.2.49        
6.3.2.-
 » show all
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00041  Alanine (Ala)
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   L-Alanine
    D00012  Alanine (USP)
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D00012  L-Alanine
Other DBs
CAS: 56-41-7
PubChem: 3343
ChEBI: 16977
KNApSAcK: C00001332
PDB-CCD: ALA[PDBj]
3DMET: B00011
NIKKAJI: J9.168E
LinkDB
KCF data

ATOM        6
            1   O6a O    22.7503  -15.7507
            2   C6a C    23.9627  -15.0506
            3   C1c C    25.1753  -15.7507
            4   C1a C    26.3878  -15.0506
            5   O6a O    23.9627  -13.6508
            6   N1a N    25.1753  -17.1506
BOND        5
            1     1   2 1
            2     2   3 1
            3     3   4 1
            4     2   5 2
            5     3   6 1 #Down

» Japanese version

KEGG   COMPOUND: C00183
Entry
C00183                      Compound                               
Name
L-Valine;
2-Amino-3-methylbutyric acid
Formula
C5H11NO2
Exact mass
117.0790
Mol weight
117.15
Structure
Remark
Same as: D00039
Reaction
R01212 R01214 R01215 R01434 R01437 R02200 R03665 R04870
R08663 R10031 R10941 R10942
Pathway
map00280  Valine, leucine and isoleucine degradation
map00290  Valine, leucine and isoleucine biosynthesis
map00311  Penicillin and cephalosporin biosynthesis
map00460  Cyanoamino acid metabolism
map00770  Pantothenate and CoA biosynthesis
map00966  Glucosinolate biosynthesis
map00970  Aminoacyl-tRNA biosynthesis
map01060  Biosynthesis of plant secondary metabolites
map01063  Biosynthesis of alkaloids derived from shikimate pathway
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01210  2-Oxocarboxylic acid metabolism
map01230  Biosynthesis of amino acids
map01240  Biosynthesis of cofactors
map02010  ABC transporters
map04974  Protein digestion and absorption
map04978  Mineral absorption
map05230  Central carbon metabolism in cancer
Module
M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate
M00672  Penicillin biosynthesis, aminoadipate + cycteine + valine => penicillin
M00673  Cephamycin C biosynthesis, aminoadipate + cycteine + valine => cephamycin C
Network
nt06024  Valine, leucine and isoleucine degradation
Enzyme
1.4.1.8         1.4.1.9         1.4.1.23        1.14.14.38      
1.14.14.39      2.6.1.6         2.6.1.32        2.6.1.42        
2.6.1.66        4.1.1.14        6.1.1.9         6.3.2.26        
6.3.2.47
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00183  Valine (Val)
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   L-Valine
    D00039  Valine (USP)
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D00039  L-Valine
Other DBs
CAS: 72-18-4
PubChem: 3483
ChEBI: 16414
KNApSAcK: C00001398
PDB-CCD: VAL[PDBj]
3DMET: B00054
NIKKAJI: J9.179K
LinkDB
KCF data

ATOM        8
            1   C1c C    24.8500  -19.0764
            2   C1c C    26.0666  -18.3804
            3   C6a C    23.6334  -18.3629
            4   N1a N    24.8442  -20.4802
            5   C1a C    27.2716  -19.0881
            6   C1a C    26.0725  -16.9825
            7   O6a O    22.4226  -19.0589
            8   O6a O    23.6392  -16.9707
BOND        7
            1     1   2 1
            2     1   3 1
            3     1   4 1 #Down
            4     2   5 1
            5     2   6 1
            6     3   7 1
            7     3   8 2

» Japanese version

KEGG   COMPOUND: C00123
Entry
C00123                      Compound                               
Name
L-Leucine;
2-Amino-4-methylvaleric acid;
(2S)-alpha-2-Amino-4-methylvaleric acid;
(2S)-alpha-Leucine
Formula
C6H13NO2
Exact mass
131.0946
Mol weight
131.17
Structure
Remark
Same as: D00030
Reaction
R01088 R01089 R01090 R01091 R02552 R03657 R08411 R08664
R10944
Pathway
map00280  Valine, leucine and isoleucine degradation
map00290  Valine, leucine and isoleucine biosynthesis
map00966  Glucosinolate biosynthesis
map00970  Aminoacyl-tRNA biosynthesis
map01060  Biosynthesis of plant secondary metabolites
map01065  Biosynthesis of alkaloids derived from histidine and purine
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01210  2-Oxocarboxylic acid metabolism
map01230  Biosynthesis of amino acids
map02010  ABC transporters
map04150  mTOR signaling pathway
map04974  Protein digestion and absorption
map04978  Mineral absorption
map05131  Shigellosis
map05230  Central carbon metabolism in cancer
Module
M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
Network
nt06024  Valine, leucine and isoleucine degradation
Enzyme
1.4.1.9         1.14.13.-       2.3.1.66        2.6.1.6         
2.6.1.42        2.6.1.67        3.5.1.64        5.4.3.7         
6.1.1.4         6.3.2.47
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00123  Leucine (Leu)
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   L-Leucine
    D00030  Leucine (USP)
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D00030  L-Leucine
Other DBs
CAS: 61-90-5
PubChem: 3423
ChEBI: 15603
KNApSAcK: C00001377
PDB-CCD: LEU[PDBj]
3DMET: B00034
NIKKAJI: J1.167C
LinkDB
KCF data

ATOM        9
            1   C1c C    25.0761  -19.4138
            2   C1b C    26.2633  -18.6769
            3   C6a C    23.8420  -18.7586
            4   N1a N    25.1229  -20.8173
            5   C1c C    27.4974  -19.3377
            6   O6a O    22.6841  -19.5483
            7   O6a O    23.8654  -17.3551
            8   C1a C    28.6846  -18.6007
            9   C1a C    27.5442  -20.7356
BOND        8
            1     1   2 1
            2     1   3 1
            3     1   4 1 #Down
            4     2   5 1
            5     3   6 1
            6     3   7 2
            7     5   8 1
            8     5   9 1

» Japanese version

KEGG   COMPOUND: C00073
Entry
C00073                      Compound                               
Name
L-Methionine;
Methionine;
L-2-Amino-4methylthiobutyric acid
Formula
C5H11NO2S
Exact mass
149.0511
Mol weight
149.21
Structure
Remark
Same as: D00019
Reaction
R00177 R00648 R00649 R00650 R00651 R00652 R00653 R00654
R00655 R00656 R00657 R00946 R01078 R02025 R02821 R03472
R03659 R04153 R04405 R04710 R06268 R06269 R06270 R06895
R07396 R07606 R07608 R07767 R08583 R08588 R08618 R08635
R08862 R08873 R08875 R08893 R09373 R09394 R09637 R09639
R10204 R10220 R10246 R10430 R10437 R10552 R10645 R10646
R10649 R10650 R10652 R10667 R11063 R11112 R11274 R11275
R11293 R11294 R11484 R11700 R11710 R11919 R12002 R12055
R12098 R12161 R12162 R12238 R12239 R12423 R12424 R12497
R12507 R12569 R12724 R12750 R12788 R13130 R13131 R13180
Pathway
map00270  Cysteine and methionine metabolism
map00470  D-Amino acid metabolism
map00966  Glucosinolate biosynthesis
map00970  Aminoacyl-tRNA biosynthesis
map00999  Biosynthesis of various plant secondary metabolites
map01060  Biosynthesis of plant secondary metabolites
map01070  Biosynthesis of plant hormones
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01210  2-Oxocarboxylic acid metabolism
map01230  Biosynthesis of amino acids
map01240  Biosynthesis of cofactors
map01523  Antifolate resistance
map04148  Efferocytosis
map04974  Protein digestion and absorption
map04978  Mineral absorption
map04980  Cobalamin transport and metabolism
map05230  Central carbon metabolism in cancer
Module
M00017  Methionine biosynthesis, aspartate => homoserine => methionine
M00034  Methionine salvage pathway
M00035  Methionine degradation
M00368  Ethylene biosynthesis, methionine => ethylene
M00609  Cysteine biosynthesis, methionine => cysteine
M00953  Mugineic acid biosynthesis, methionine => 3-epihydroxymugineic acid
Network
nt06030  Methionine metabolism
Enzyme
1.1.98.7        1.1.99.38       1.3.98.3        1.3.98.6        
1.3.98.7        1.4.3.2         1.8.4.11        1.8.4.13        
1.8.4.14        1.17.98.2       1.21.98.1       1.21.98.3       
1.21.98.5       1.97.1.4        2.1.1.3         2.1.1.5         
2.1.1.10        2.1.1.12        2.1.1.13        2.1.1.14        
2.1.1.280       2.1.1.308       2.1.1.326       2.1.1.342       
2.1.1.350       2.1.1.379       2.1.1.390       2.1.1.-         
2.4.99.17       2.5.1.6         2.5.1.49        2.5.1.63        
2.5.1.94        2.5.1.120       2.5.1.147       2.6.1.5         
2.6.1.57        2.6.1.73        2.6.1.88        2.6.1.117       
2.6.1.-         2.8.1.6         2.8.1.8         2.8.4.3         
2.8.4.4         2.8.4.5         3.4.13.12       3.5.1.31        
3.13.2.3        4.1.1.57        4.1.3.44        4.1.99.17       
4.1.99.19       4.1.99.22       4.1.99.23       4.1.99.26       
4.3.1.30        4.3.1.32        4.4.1.11        4.7.1.1         
5.1.1.2         6.1.1.10
 » show all
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00073  Methionine (Met)
Anatomical Therapeutic Chemical (ATC) classification [BR:br08303]
 V VARIOUS
  V03 ALL OTHER THERAPEUTIC PRODUCTS
   V03A ALL OTHER THERAPEUTIC PRODUCTS
    V03AB Antidotes
     V03AB26 Methionine
      D00019  Methionine (USP)
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   Methionine
    D00019  Methionine (USP)
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D00019  L-Methionine
Other DBs
CAS: 63-68-3
PubChem: 3373
ChEBI: 16643
KNApSAcK: C00001379
PDB-CCD: MET[PDBj]
3DMET: B01148
NIKKAJI: J9.174J
LinkDB
KCF data

ATOM        9
            1   C1c C    24.5047  -19.4197
            2   C6a C    23.3598  -18.6719
            3   C1b C    25.7313  -18.7361
            4   N1a N    24.5455  -20.8273
            5   O6a O    22.1332  -19.3553
            6   O6a O    23.3772  -17.2641
            7   C1b C    26.9405  -19.4546
            8   S2a S    28.1672  -18.7712
            9   C1a C    29.3647  -19.4896
BOND        8
            1     1   2 1
            2     1   3 1
            3     1   4 1 #Down
            4     2   5 1
            5     2   6 2
            6     3   7 1
            7     7   8 1
            8     8   9 1

» Japanese version

KEGG   COMPOUND: C00407
Entry
C00407                      Compound                               
Name
L-Isoleucine;
2-Amino-3-methylvaleric acid
Formula
C6H13NO2
Exact mass
131.0946
Mol weight
131.17
Structure
Remark
Same as: D00065
Reaction
R02196 R02197 R02199 R02200 R03656 R06726 R09344 R09403
R10027 R10723 R10943 R11078 R11723 R12650
Pathway
map00280  Valine, leucine and isoleucine degradation
map00290  Valine, leucine and isoleucine biosynthesis
map00460  Cyanoamino acid metabolism
map00960  Tropane, piperidine and pyridine alkaloid biosynthesis
map00966  Glucosinolate biosynthesis
map00970  Aminoacyl-tRNA biosynthesis
map01060  Biosynthesis of plant secondary metabolites
map01064  Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01210  2-Oxocarboxylic acid metabolism
map01230  Biosynthesis of amino acids
map02010  ABC transporters
map04974  Protein digestion and absorption
map04978  Mineral absorption
map05131  Shigellosis
map05230  Central carbon metabolism in cancer
Module
M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Network
nt06024  Valine, leucine and isoleucine degradation
Enzyme
1.4.1.9         1.4.3.2         1.14.11.45      1.14.11.74      
1.14.14.38      1.14.14.39      2.6.1.32        2.6.1.42        
5.1.1.21        6.1.1.5         6.3.2.47        6.3.2.50
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00407  Isoleucine (Ile)
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   L-Isoleucine
    D00065  Isoleucine (USP)
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D00065  L-Isoleucine
Other DBs
CAS: 73-32-5
PubChem: 3697
ChEBI: 17191
KNApSAcK: C00001374
PDB-CCD: ILE[PDBj]
3DMET: B01236
NIKKAJI: J2.818E
LinkDB
KCF data

ATOM        9
            1   C1c C    22.4922  -17.1397
            2   C1c C    23.6796  -16.4029
            3   C6a C    21.2581  -16.4789
            4   N1a N    22.5391  -18.5377
            5   C1b C    24.9137  -17.0637
            6   C1a C    23.6387  -15.0049
            7   O6a O    20.1001  -17.2742
            8   O6a O    21.2815  -15.0809
            9   C1a C    26.1069  -16.3268
BOND        8
            1     1   2 1
            2     1   3 1
            3     1   4 1 #Down
            4     2   5 1
            5     2   6 1 #Up
            6     3   7 1
            7     3   8 2
            8     5   9 1

» Japanese version

KEGG   COMPOUND: C00148
Entry
C00148                      Compound                               
Name
L-Proline;
2-Pyrrolidinecarboxylic acid
Formula
C5H9NO2
Exact mass
115.0633
Mol weight
115.13
Structure
Remark
Same as: D00035
Reaction
R00135 R00671 R01246 R01248 R01249 R01251 R01252 R01253
R01255 R03661 R06746 R09572 R09650 R10507 R10661 R11594
R12056
Pathway
map00330  Arginine and proline metabolism
map00332  Carbapenem biosynthesis
map00333  Prodigiosin biosynthesis
map00401  Novobiocin biosynthesis
map00404  Staurosporine biosynthesis
map00470  D-Amino acid metabolism
map00970  Aminoacyl-tRNA biosynthesis
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01230  Biosynthesis of amino acids
map02010  ABC transporters
map04974  Protein digestion and absorption
map04978  Mineral absorption
map05230  Central carbon metabolism in cancer
Module
M00015  Proline biosynthesis, glutamate => proline
M00786  Fumitremorgin alkaloid biosynthesis, tryptophan + proline => fumitremorgin C/A
M00837  Prodigiosin biosynthesis, L-proline => prodigiosin
M00838  Undecylprodigiosin biosynthesis, L-proline => undecylprodigiosin
M00970  Proline degradation, proline => glutamate
M00972  Proline metabolism
Network
nt06033  Glycine, serine and arginine metabolism
Enzyme
1.5.1.1         1.5.1.2         1.5.1.21        1.5.1.49        
1.5.5.2         1.5.-.-         1.14.11.2       1.14.11.28      
1.14.11.56      1.14.11.57      3.4.11.5        3.5.1.101       
4.3.1.12        5.1.1.4         6.1.1.15        6.2.1.53
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00148  Proline (Pro)
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D00035  L-Proline
Other DBs
CAS: 147-85-3
PubChem: 3448
ChEBI: 17203
KNApSAcK: C00001388
PDB-CCD: PRO[PDBj]
3DMET: B01173
NIKKAJI: J9.117K
LinkDB
KCF data

ATOM        8
            1   C1x C    10.0100  -19.3900
            2   C1x C    10.4300  -20.6500
            3   C1x C    11.8300  -20.6500
            4   C1y C    12.2500  -19.3200
            5   N1x N    11.1300  -18.4800
            6   C6a C    13.4400  -18.6200
            7   O6a O    14.7000  -19.3200
            8   O6a O    13.4400  -17.2200
BOND        8
            1     1   2 1
            2     2   3 1
            3     3   4 1
            4     4   5 1
            5     1   5 1
            6     4   6 1 #Down
            7     6   7 1
            8     6   8 2

» Japanese version

KEGG   COMPOUND: C00079
Entry
C00079                      Compound                               
Name
L-Phenylalanine;
(S)-alpha-Amino-beta-phenylpropionic acid
Formula
C9H11NO2
Exact mass
165.0790
Mol weight
165.19
Structure
Remark
Same as: D00021
Reaction
R00686 R00688 R00689 R00690 R00691 R00692 R00693 R00694
R00695 R00697 R00698 R00699 R01375 R01376 R01795 R03660
R06744 R07211 R08463 R08652 R08690 R09535 R09578 R09579
R10286 R10287 R10495 R10499 R10729 R11068 R11918 R12413
R12540 R12543
Pathway
map00360  Phenylalanine metabolism
map00400  Phenylalanine, tyrosine and tryptophan biosynthesis
map00460  Cyanoamino acid metabolism
map00470  D-Amino acid metabolism
map00940  Phenylpropanoid biosynthesis
map00960  Tropane, piperidine and pyridine alkaloid biosynthesis
map00966  Glucosinolate biosynthesis
map00970  Aminoacyl-tRNA biosynthesis
map00996  Biosynthesis of various alkaloids
map00997  Biosynthesis of various other secondary metabolites
map00999  Biosynthesis of various plant secondary metabolites
map01060  Biosynthesis of plant secondary metabolites
map01061  Biosynthesis of phenylpropanoids
map01063  Biosynthesis of alkaloids derived from shikimate pathway
map01064  Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
map01070  Biosynthesis of plant hormones
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01210  2-Oxocarboxylic acid metabolism
map01230  Biosynthesis of amino acids
map02010  ABC transporters
map04974  Protein digestion and absorption
map04978  Mineral absorption
map05230  Central carbon metabolism in cancer
Module
M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol
M00137  Flavanone biosynthesis, phenylalanine => naringenin
M00891  Ditryptophenaline biosynthesis, tryptophan + phenylalanine => ditryptophenaline
M00910  Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine
Network
nt06016  Phenylalanine and tyrosine metabolism
Enzyme
1.4.1.20        1.4.3.2         1.11.1.21       1.13.12.9       
1.14.14.40      1.14.16.1       1.14.16.7       2.3.1.53        
2.6.1.1         2.6.1.5         2.6.1.9         2.6.1.28        
2.6.1.57        2.6.1.58        2.6.1.64        2.6.1.70        
2.6.1.-         3.4.17.23       4.1.1.28        4.1.1.53        
4.1.1.109       4.2.1.51        4.2.1.91        4.3.1.24        
4.3.1.25        5.1.1.11        5.4.3.10        5.4.3.11        
6.1.1.20        6.3.2.40        6.3.2.-
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00079  Phenylalanine (Phe)
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   L-Phenylalanine
    D00021  Phenylalanine (USP/INN)
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D00021  L-Phenylalanine
Other DBs
CAS: 63-91-2
PubChem: 3379
ChEBI: 17295
KNApSAcK: C00001386
PDB-CCD: PHE[PDBj]
3DMET: B01151
NIKKAJI: J9.175H
LinkDB
KCF data

ATOM        12
            1   C8y C    25.3400  -16.0300
            2   C8x C    25.3400  -17.5000
            3   C8x C    24.0800  -18.2000
            4   C8x C    22.8900  -17.5000
            5   C8x C    22.8900  -16.0300
            6   C8x C    24.0800  -15.3300
            7   C1b C    26.5300  -15.3300
            8   C1c C    27.7200  -16.0300
            9   C6a C    28.9100  -15.3300
            10  O6a O    30.1000  -16.0300
            11  O6a O    28.9100  -13.9300
            12  N1a N    27.7200  -17.5000
BOND        12
            1     1   2 2
            2     2   3 1
            3     3   4 2
            4     4   5 1
            5     5   6 2
            6     1   6 1
            7     1   7 1
            8     7   8 1
            9     8   9 1
            10    9  10 1
            11    9  11 2
            12    8  12 1 #Up

» Japanese version

KEGG   COMPOUND: C00078
Entry
C00078                      Compound                               
Name
L-Tryptophan;
Tryptophan;
(S)-alpha-Amino-beta-(3-indolyl)-propionic acid
Formula
C11H12N2O2
Exact mass
204.0899
Mol weight
204.22
Structure
Remark
Same as: D00020
Reaction
R00673 R00674 R00675 R00676 R00677 R00678 R00679 R00681
R00682 R00683 R00684 R00685 R01376 R01657 R01814 R02722
R03664 R05317 R07213 R08160 R08547 R09570 R09583 R09638
R10180 R10661 R11119 R11328 R12031 R12032 R12055 R12151
R12413 R12417 R12436 R12542 R12758 R12782 R12784 R12957
Pathway
map00260  Glycine, serine and threonine metabolism
map00380  Tryptophan metabolism
map00400  Phenylalanine, tyrosine and tryptophan biosynthesis
map00404  Staurosporine biosynthesis
map00901  Indole alkaloid biosynthesis
map00966  Glucosinolate biosynthesis
map00970  Aminoacyl-tRNA biosynthesis
map00996  Biosynthesis of various alkaloids
map00997  Biosynthesis of various other secondary metabolites
map00999  Biosynthesis of various plant secondary metabolites
map01060  Biosynthesis of plant secondary metabolites
map01061  Biosynthesis of phenylpropanoids
map01063  Biosynthesis of alkaloids derived from shikimate pathway
map01070  Biosynthesis of plant hormones
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01210  2-Oxocarboxylic acid metabolism
map01230  Biosynthesis of amino acids
map01240  Biosynthesis of cofactors
map04361  Axon regeneration
map04726  Serotonergic synapse
map04974  Protein digestion and absorption
map04978  Mineral absorption
map05143  African trypanosomiasis
map05230  Central carbon metabolism in cancer
Module
M00023  Tryptophan biosynthesis, chorismate => tryptophan
M00037  Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin
M00038  Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate
M00370  Glucosinolate biosynthesis, tryptophan => glucobrassicin
M00786  Fumitremorgin alkaloid biosynthesis, tryptophan + proline => fumitremorgin C/A
M00789  Rebeccamycin biosynthesis, tryptophan => rebeccamycin
M00790  Pyrrolnitrin biosynthesis, tryptophan => pyrrolnitrin
M00805  Staurosporine biosynthesis, tryptophan => staurosporine
M00808  Violacein biosynthesis, tryptophan => violacein
M00891  Ditryptophenaline biosynthesis, tryptophan + phenylalanine => ditryptophenaline
M00901  Fumiquinazoline biosynthesis, tryptophan + alanine + anthranilate => fumiquinazoline
M00912  NAD biosynthesis, tryptophan => quinolinate => NAD
M00936  Melatonin biosynthesis, plants, tryptophan => serotonin => melatonin
M00962  Psilocybin biosynthesis, tryptophan => psilocybin
M00963  Chanoclavine aldehyde biosynthesis, tryptophan => chanoclavine-I aldehyde
Network
nt06028  Dopamine and serotonin metabolism
nt06036  Lysine degradation
Enzyme
1.3.3.10        1.4.1.19        1.4.3.2         1.4.3.-         
1.13.11.11      1.13.11.52      1.13.12.3       1.13.99.3       
1.14.14.156     1.14.16.4       1.14.19.9       1.14.19.58      
1.14.19.59      2.1.1.106       2.5.1.34        2.5.1.80        
2.6.1.27        2.6.1.28        2.6.1.99        2.6.1.-         
3.5.1.57        4.1.1.28        4.1.1.105       4.1.99.1        
4.1.99.25       4.2.1.20        4.2.1.122       4.3.1.31        
6.1.1.2         6.2.1.73        6.3.2.-
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00078  Tryptophan (Trp)
Anatomical Therapeutic Chemical (ATC) classification [BR:br08303]
 N NERVOUS SYSTEM
  N06 PSYCHOANALEPTICS
   N06A ANTIDEPRESSANTS
    N06AX Other antidepressants
     N06AX02 Tryptophan
      D00020  Tryptophan (USP/INN)
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   L-Tryptophan
    D00020  Tryptophan (USP/INN)
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D00020  L-Tryptophan
Other DBs
CAS: 73-22-3
PubChem: 3378
ChEBI: 16828
KNApSAcK: C00001396
PDB-CCD: TRP[PDBj]
3DMET: B01150
NIKKAJI: J9.181B
LinkDB
KCF data

ATOM        15
            1   C8y C    17.0958  -16.0419
            2   C8y C    18.4268  -16.3221
            3   C8y C    16.3953  -17.2327
            4   C8x C    16.3953  -14.7810
            5   C1b C    19.4775  -15.4815
            6   N4x N    17.2359  -18.2835
            7   C8x C    14.9243  -17.2327
            8   C8x C    14.9943  -14.7810
            9   C1c C    20.7384  -16.1120
            10  C8x C    14.2238  -16.0419
            11  N1a N    20.7384  -17.5830
            12  C6a C    21.9292  -15.4815
            13  O6a O    23.1201  -16.1820
            14  O6a O    21.9292  -14.0805
            15  C8x C    18.4268  -17.7221
BOND        16
            1     1   2 1
            2     1   3 2
            3     1   4 1
            4     2   5 1
            5     3   6 1
            6     3   7 1
            7     4   8 2
            8     5   9 1
            9     7  10 2
            10    9  11 1 #Up
            11    9  12 1
            12   12  13 1
            13   12  14 2
            14    8  10 1
            15    2  15 2
            16   15   6 1

» Japanese version

KEGG   COMPOUND: C00065
Entry
C00065                      Compound                               
Name
L-Serine;
L-2-Amino-3-hydroxypropionic acid;
L-3-Hydroxy-alanine;
Serine
Formula
C3H7NO3
Exact mass
105.0426
Mol weight
105.09
Structure
Remark
Same as: D00016
Reaction
R00220 R00581 R00582 R00584 R00585 R00586 R00588 R00589
R00590 R00674 R00891 R00945 R01281 R01289 R01290 R01800
R02378 R02563 R02722 R02817 R03662 R03923 R04942 R06126
R07376 R07377 R07644 R08218 R09099 R10255 R10441 R10880
R10984 R10985 R10986 R11667 R12342 R12344 R12757 R12779
R12781 R13249
Pathway
map00260  Glycine, serine and threonine metabolism
map00261  Monobactam biosynthesis
map00270  Cysteine and methionine metabolism
map00460  Cyanoamino acid metabolism
map00470  D-Amino acid metabolism
map00564  Glycerophospholipid metabolism
map00600  Sphingolipid metabolism
map00630  Glyoxylate and dicarboxylate metabolism
map00680  Methane metabolism
map00920  Sulfur metabolism
map00970  Aminoacyl-tRNA biosynthesis
map00997  Biosynthesis of various other secondary metabolites
map00998  Biosynthesis of various antibiotics
map01054  Nonribosomal peptide structures
map01060  Biosynthesis of plant secondary metabolites
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01120  Microbial metabolism in diverse environments
map01200  Carbon metabolism
map01230  Biosynthesis of amino acids
map01240  Biosynthesis of cofactors
map01502  Vancomycin resistance
map02010  ABC transporters
map04071  Sphingolipid signaling pathway
map04974  Protein digestion and absorption
map04978  Mineral absorption
map05230  Central carbon metabolism in cancer
Module
M00020  Serine biosynthesis, glycerate-3P => serine
M00021  Cysteine biosynthesis, serine => cysteine
M00035  Methionine degradation
M00094  Ceramide biosynthesis
M00338  Cysteine biosynthesis, homocysteine + serine => cysteine
M00346  Formaldehyde assimilation, serine pathway
M00532  Photorespiration
M00736  Nocardicin A biosynthesis, L-pHPG + arginine + serine => nocardicin A
M00785  Cycloserine biosynthesis, arginine/serine => cycloserine
M00875  Staphyloferrin B biosynthesis, L-serine => staphyloferrin B
M00975  Betaine degradation, bacteria, betaine => pyruvate
Network
nt06030  Methionine metabolism
nt06033  Glycine, serine and arginine metabolism
Enzyme
1.1.1.276       1.1.1.387       1.4.1.7         2.1.2.1         
2.3.1.30        2.3.1.50        2.6.1.45        2.6.1.51        
2.7.1.80        2.7.1.225       2.7.1.226       2.7.8.4         
2.7.8.8         2.7.8.29        2.7.8.38        2.8.1.4         
3.1.3.3         3.1.4.13        4.1.1.-         4.2.1.20        
4.2.1.22        4.2.1.50        4.2.1.122       4.3.1.17        
4.3.1.19        5.1.1.10        5.1.1.18        6.1.1.11        
6.2.1.72        6.3.2.14
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00065  Serine (Ser)
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D00016  L-Serine
Other DBs
CAS: 56-45-1
PubChem: 3365
ChEBI: 17115
KNApSAcK: C00001393
PDB-CCD: SER[PDBj]
3DMET: B01145
NIKKAJI: J1.195I
LinkDB
KCF data

ATOM        7
            1   C1c C    23.5961  -17.5357
            2   C6a C    22.4445  -16.7873
            3   C1b C    24.8238  -16.8518
            4   N1a N    23.6370  -18.9388
            5   O6a O    21.2226  -17.4714
            6   O6a O    22.4677  -15.3785
            7   O1a O    26.0339  -17.5708
BOND        6
            1     1   2 1
            2     1   3 1
            3     1   4 1 #Down
            4     2   5 1
            5     2   6 2
            6     3   7 1

» Japanese version

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