Entry
Name
Endocytosis - Oncorhynchus kisutch (coho salmon)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Oncorhynchus kisutch (coho salmon) [GN:
oki ]
Gene
109868800 zinc finger FYVE domain-containing protein 16 isoform X1 [KO:K04679 ]
109883576 zinc finger FYVE domain-containing protein 9-like isoform X1 [KO:K04679 ]
109873808 zinc finger FYVE domain-containing protein 16 isoform X1 [KO:K04679 ]
109895715 smad2; mothers against decapentaplegic homolog 2 isoform X1 [KO:K04500 ]
109909887 sh3kbp1; SH3 domain-containing kinase-binding protein 1 isoform X8 [KO:K12470 ]
109899241 SH3 domain-containing kinase-binding protein 1-like isoform X1 [KO:K12470 ]
116365916 myc box-dependent-interacting protein 1-like isoform X1 [KO:K12562 ]
109889174 eps15l1; epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
109897944 epidermal growth factor receptor substrate 15-like isoform X4 [KO:K12472 ]
109902421 epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
109874571 epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
109902623 epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472 ]
109881808 low density lipoprotein receptor adapter protein 1-A-like isoform X1 [KO:K12474 ]
109894572 low density lipoprotein receptor adapter protein 1-B-like isoform X1 [KO:K12474 ]
109883330 low density lipoprotein receptor adapter protein 1-A-like [KO:K12474 ]
109903973 low density lipoprotein receptor adapter protein 1-B isoform X1 [KO:K12474 ]
109880967 low density lipoprotein receptor adapter protein 1-like [KO:K12474 ]
109896749 neural Wiskott-Aldrich syndrome protein-like isoform X1 [KO:K23612 ]
109897775 neural Wiskott-Aldrich syndrome protein-like isoform X1 [KO:K23612 ]
109864319 neural Wiskott-Aldrich syndrome protein-like isoform X1 [KO:K23612 ]
116371034 actin-related protein 2/3 complex subunit 1A-A-like isoform X1 [KO:K05757 ]
116372103 actin-related protein 2/3 complex subunit 1B-like isoform X1 [KO:K05757 ]
116358959 actin-related protein 2/3 complex subunit 1B-like isoform X1 [KO:K05757 ]
109876167 actin-related protein 2/3 complex subunit 1A-A-like isoform X1 [KO:K05757 ]
109895581 actin-related protein 2/3 complex subunit 4 isoform X2 [KO:K05755 ]
109868528 arpc5l; actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
109874089 actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
109897275 WAS/WASL-interacting protein family member 2-like isoform X1 [KO:K19475 ]
109892873 LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein [KO:K03283 ]
109902845 putative tyrosine-protein phosphatase auxilin isoform X1 [KO:K09526 ]
109897218 putative tyrosine-protein phosphatase auxilin isoform X1 [KO:K09526 ]
109889625 F-actin-capping protein subunit alpha-2-like isoform X2 [KO:K10364 ]
109891098 F-actin-capping protein subunit beta isoforms 1 and 2 isoform X1 [KO:K10365 ]
109896032 F-actin-capping protein subunit beta isoforms 1 and 2 isoform X1 [KO:K10365 ]
109868582 vacuolar protein sorting-associated protein 29 isoform X2 [KO:K18467 ]
109874159 vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
109889447 vacuolar protein sorting-associated protein 26A isoform X1 [KO:K18466 ]
109899885 vps26a; vacuolar protein sorting-associated protein 26A [KO:K18466 ]
109873195 vps26b; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
109895288 vps35; vacuolar protein sorting-associated protein 35 isoform X1 [KO:K18468 ]
109886151 vacuolar protein sorting-associated protein 35 isoform X1 [KO:K18468 ]
109883006 hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
116360007 hepatocyte growth factor-regulated tyrosine kinase substrate-like isoform X1 [KO:K12182 ]
109883767 stam; signal transducing adapter molecule 1 isoform X2 [KO:K04705 ]
109907229 vacuolar protein sorting-associated protein 28 homolog [KO:K12184 ]
109903365 vps28; vacuolar protein sorting-associated protein 28 homolog [KO:K12184 ]
109878487 vps37a; vacuolar protein sorting-associated protein 37A [KO:K12185 ]
109873101 vps37d; vacuolar protein sorting-associated protein 37D isoform X1 [KO:K12185 ]
109881975 vps36; vacuolar protein-sorting-associated protein 36 [KO:K12190 ]
109870429 vps25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
109900076 vacuolar protein-sorting-associated protein 25 isoform X1 [KO:K12189 ]
116359972 charged multivesicular body protein 6-like isoform X1 [KO:K12195 ]
116373002 charged multivesicular body protein 2b-like isoform X1 [KO:K12192 ]
109887345 charged multivesicular body protein 2b-like isoform X1 [KO:K12192 ]
109872024 vacuolar protein sorting-associated protein 4B isoform X1 [KO:K12196 ]
109902587 vacuolar protein sorting-associated protein 4B isoform X1 [KO:K12196 ]
109874945 vacuolar protein sorting-associated protein 4B isoform X1 [KO:K12196 ]
109867324 vacuolar protein sorting-associated protein 4A-like isoform X2 [KO:K12196 ]
109900756 vta1; vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199 ]
109866329 vacuolar protein sorting-associated protein VTA1 homolog isoform X1 [KO:K12199 ]
109879613 programmed cell death 6-interacting protein-like isoform X1 [KO:K12200 ]
109907322 programmed cell death 6-interacting protein isoform X1 [KO:K12200 ]
109900736 cation-independent mannose-6-phosphate receptor-like isoform X1 [KO:K06564 ]
109866144 cation-independent mannose-6-phosphate receptor isoform X1 [KO:K06564 ]
109893203 il2rb; interleukin-2 receptor subunit beta isoform X2 [KO:K05069 ]
109874333 cytokine receptor common subunit gamma-like isoform X2 [KO:K05070 ]
109908045 rho-related GTP-binding protein RhoA-C-like isoform X2 [KO:K04513 ]
109903598 class I histocompatibility antigen, F10 alpha chain-like [KO:K06751 ]
109904412 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
109870790 major histocompatibility complex class I-related gene protein isoform X1 [KO:K06751 ]
109876054 major histocompatibility complex class I-related gene protein isoform X1 [KO:K06751 ]
109873099 rab GTPase-binding effector protein 1-like isoform X1 [KO:K12480 ]
109899893 rufy2; RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482 ]
109864999 rufy1; RUN and FYVE domain-containing protein 1 isoform X1 [KO:K12482 ]
109867935 actin cytoskeleton-regulatory complex protein pan1 isoform X1 [KO:K12484 ]
109865486 rab11fip3; rab11 family-interacting protein 3 isoform X2 [KO:K12485 ]
109876516 LOW QUALITY PROTEIN: partitioning defective 6 homolog gamma [KO:K06093 ]
109888974 stromal membrane-associated protein 1-like isoform X7 [KO:K12486 ]
109877971 stromal membrane-associated protein 1-like isoform X1 [KO:K12486 ]
109908803 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X2 [KO:K12488 ]
109878146 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12488 ]
109891489 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12488 ]
109903887 asap2; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12488 ]
109893803 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like isoform X1 [KO:K12488 ]
109893811 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3-like isoform X1 [KO:K12488 ]
109900598 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like [KO:K12488 ]
109899463 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X1 [KO:K12488 ]
109866250 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like [KO:K12488 ]
109875090 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X2 [KO:K12488 ]
109897023 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1-like [KO:K12489 ]
109906298 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12489 ]
109906499 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12489 ]
109876210 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12489 ]
109869189 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like isoform X1 [KO:K12489 ]
109891664 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like isoform X1 [KO:K12489 ]
109907055 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like [KO:K12489 ]
109902256 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2-like isoform X4 [KO:K12489 ]
109875624 arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 [KO:K18439 ]
109879392 arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K18439 ]
109909501 LOW QUALITY PROTEIN: arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 [KO:K18439 ]
109892649 arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K18439 ]
109873185 arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 [KO:K18439 ]
109874203 arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 [KO:K18439 ]
109878841 arap2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 [KO:K18440 ]
109878030 arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 [KO:K12490 ]
109910211 arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3-like isoform X1 [KO:K12490 ]
109874721 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12491 ]
109882717 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1-like isoform X1 [KO:K12491 ]
109871998 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 isoform X2 [KO:K12491 ]
109894670 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X3 [KO:K12491 ]
109869614 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K17848 ]
109882618 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X2 [KO:K17848 ]
109908288 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2-like [KO:K17848 ]
109891230 ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
109894117 ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
116371599 ADP-ribosylation factor GTPase-activating protein 2-like isoform X1 [KO:K12493 ]
109881818 ADP-ribosylation factor GTPase-activating protein 2-like isoform X1 [KO:K12493 ]
109896552 ADP-ribosylation factor GTPase-activating protein 3 isoform X1 [KO:K12493 ]
109868337 PH and SEC7 domain-containing protein 4-like isoform X1 [KO:K12494 ]
109880848 IQ motif and SEC7 domain-containing protein 1-like isoform X1 [KO:K12495 ]
109869702 IQ motif and SEC7 domain-containing protein 1-like isoform X1 [KO:K12495 ]
109869766 IQ motif and SEC7 domain-containing protein 1-like isoform X1 [KO:K12495 ]
109888860 IQ motif and SEC7 domain-containing protein 3 isoform X1 [KO:K12495 ]
116354450 LOW QUALITY PROTEIN: IQ motif and SEC7 domain-containing protein 1-like [KO:K12495 ]
109879774 IQ motif and SEC7 domain-containing protein 3-like isoform X1 [KO:K12495 ]
109907761 IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495 ]
109908163 IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495 ]
109869529 brefeldin A-inhibited guanine nucleotide-exchange protein 2-like isoform X1 [KO:K18442 ]
109872069 brefeldin A-inhibited guanine nucleotide-exchange protein 1 [KO:K18442 ]
109909644 brefeldin A-inhibited guanine nucleotide-exchange protein 1-like isoform X1 [KO:K18442 ]
109900149 brefeldin A-inhibited guanine nucleotide-exchange protein 1-like isoform X1 [KO:K18442 ]
109907976 brefeldin A-inhibited guanine nucleotide-exchange protein 2 isoform X1 [KO:K18442 ]
109889889 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
109899688 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
oki04060 Cytokine-cytokine receptor interaction
oki04070 Phosphatidylinositol signaling system
oki04130 SNARE interactions in vesicular transport
KO pathway
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