Entry
Name
Cellular senescence - Oncorhynchus tshawytscha (Chinook salmon)
Description
Cellular senescence is a state of irreversible cellular arrest and can be triggered by a number of factors, such as telomere shortening, oncogene activation, irradiation, DNA damage and oxidative stress. It is characterized by enlarged flattened morphology, senescence-associated beta-galactosidase (SA-b-gal) activity, secretion of inflammatory cytokines, growth factors and matrix metalloproteinases, as part of the senescence-associated secretory phenotype (SASP). Cellular senescence is functionally associated with many biological processes including aging, tumor suppression, placental biology, embryonic development, and wound healing.
Class
Cellular Processes; Cell growth and death
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Oncorhynchus tshawytscha (Chinook salmon) [GN:
otw ]
Gene
112217963 transforming growth factor beta-3 proprotein isoform X1 [KO:K13377 ]
112238812 transforming growth factor beta-3 proprotein isoform X1 [KO:K13377 ]
112238080 smad3b; mothers against decapentaplegic homolog 3b isoform X1 [KO:K23605 ]
112216060 pik3cd; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform isoform X1 [KO:K00922 ] [EC:2.7.1.153 ]
112251044 pik3ca; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform isoform X1 [KO:K00922 ] [EC:2.7.1.153 ]
112265788 zgc:158659; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922 ] [EC:2.7.1.153 ]
112260699 phosphatidylinositol 3-kinase regulatory subunit gamma [KO:K02649 ]
112250738 phosphatidylinositol 3-kinase regulatory subunit gamma [KO:K02649 ]
112260309 phosphatidylinositol 3-kinase regulatory subunit gamma [KO:K02649 ]
112244626 phosphatidylinositol 3-kinase regulatory subunit gamma isoform X2 [KO:K02649 ]
112252131 phosphatidylinositol 3-kinase regulatory subunit gamma [KO:K02649 ]
112226747 phosphatidylinositol 3-kinase regulatory subunit gamma [KO:K02649 ]
112248937 phosphatidylinositol 3-kinase regulatory subunit alpha [KO:K02649 ]
112230790 phosphatidylinositol 3-kinase regulatory subunit alpha isoform X2 [KO:K02649 ]
112234933 phosphatidylinositol 3-kinase regulatory subunit gamma isoform X1 [KO:K02649 ]
112250872 phosphatidylinositol 3-kinase regulatory subunit gamma isoform X1 [KO:K02649 ]
112220315 pik3r1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649 ]
112217839 cdkn1a; cyclin-dependent kinase inhibitor 1 isoform X1 [KO:K06625 ]
112264791 H-2 class I histocompatibility antigen, Q9 alpha chain [KO:K06751 ]
112267276 major histocompatibility complex class I-related gene protein isoform X1 [KO:K06751 ]
112233299 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
112233300 BOLA class I histocompatibility antigen, alpha chain BL3-7-like [KO:K06751 ]
112233323 H-2 class I histocompatibility antigen, alpha chain-like [KO:K06751 ]
112233327 class I histocompatibility antigen, F10 alpha chain-like [KO:K06751 ]
112234362 LOW QUALITY PROTEIN: major histocompatibility complex class I-related gene protein [KO:K06751 ]
112264767 major histocompatibility complex class I-related gene protein isoform X2 [KO:K06751 ]
112264770 H-2 class I histocompatibility antigen, Q10 alpha chain isoform X1 [KO:K06751 ]
112244620 class I histocompatibility antigen, F10 alpha chain isoform X1 [KO:K06751 ]
112220543 mybl2b; v-myb avian myeloblastosis viral oncogene homolog-like 2b [KO:K21769 ]
112244670 ras association domain-containing protein 5 isoform X1 [KO:K08015 ]
112254331 ras association domain-containing protein 5 isoform X4 [KO:K08015 ]
112257606 F-box and WD repeat domain-containing 11-B isoform X1 [KO:K03362 ]
112256132 F-box and WD repeat domain-containing 11-B isoform X2 [KO:K03362 ]
112250716 growth arrest and DNA damage-inducible protein GADD45 beta [KO:K04402 ]
112251192 gadd45ab; growth arrest and DNA-damage-inducible, alpha, b [KO:K04402 ]
112260284 growth arrest and DNA damage-inducible protein GADD45 alpha isoform X1 [KO:K04402 ]
112249878 growth arrest and DNA damage-inducible protein GADD45 alpha [KO:K04402 ]
112252104 growth arrest and DNA damage-inducible protein GADD45 beta [KO:K04402 ]
112263967 growth arrest and DNA damage-inducible protein GADD45 gamma [KO:K04402 ]
112230512 growth arrest and DNA damage-inducible protein GADD45 gamma-like [KO:K04402 ]
112219828 gadd45gb.1; growth arrest and DNA-damage-inducible, gamma b, tandem duplicate 1 [KO:K04402 ]
112219829 growth arrest and DNA damage-inducible protein GADD45 gamma-like [KO:K04402 ]
112230565 growth arrest and DNA damage-inducible protein GADD45 gamma-like [KO:K04402 ]
112248817 gadd45ga; growth arrest and DNA-damage-inducible, gamma a [KO:K04402 ]
112227088 growth arrest and DNA damage-inducible protein GADD45 alpha [KO:K04402 ]
112263046 rad9b; cell cycle checkpoint control protein RAD9B isoform X1 [KO:K10995 ]
112248139 traf3ip2l; uncharacterized protein traf3ip2l isoform X1 [KO:K21124 ]
112260576 insulin-like growth factor-binding protein 3 isoform X1 [KO:K10138 ]
112248503 eukaryotic translation initiation factor 4E-binding protein 2 [KO:K07205 ]
112262850 eukaryotic translation initiation factor 4E-binding protein 2 [KO:K07205 ]
112261545 zfp36l1a; mRNA decay activator protein ZFP36L1a isoform X1 [KO:K18753 ]
112266759 zgc:114130; mRNA decay activator protein ZFP36L1 isoform X1 [KO:K18753 ]
112255325 voltage-dependent L-type calcium channel subunit alpha-1D [KO:K04851 ]
112244799 voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X1 [KO:K04851 ]
112215828 voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X1 [KO:K04851 ]
112222121 voltage-dependent L-type calcium channel subunit alpha-1D-like [KO:K04851 ]
112248245 transient receptor potential cation channel subfamily V member 4-like [KO:K04973 ]
112263282 trpv4; transient receptor potential cation channel subfamily V member 4 isoform X1 [KO:K04973 ]
112249377 trpm7; transient receptor potential cation channel subfamily M member 7 isoform X1 [KO:K04982 ] [EC:2.7.11.1 ]
112261010 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
112214716 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
112228932 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
112262665 serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform-like isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
112219575 ppp3ccb; serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
112220556 ppp3cb; serine/threonine-protein phosphatase 2B catalytic subunit beta isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
112230646 ppp3ca; serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
112257024 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform-like isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
112257493 serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform-like isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
112232340 nuclear factor of activated T-cells, cytoplasmic 1 isoform X1 [KO:K04446 ]
112230033 nuclear factor of activated T-cells, cytoplasmic 1 isoform X1 [KO:K04446 ]
112264948 nfatc1; nuclear factor of activated T-cells, cytoplasmic 1 [KO:K04446 ]
112222616 nuclear factor of activated T-cells, cytoplasmic 2-like [KO:K17332 ]
112255046 nuclear factor of activated T-cells, cytoplasmic 2 isoform X1 [KO:K17332 ]
112221783 nuclear factor of activated T-cells, cytoplasmic 2 isoform X3 [KO:K17332 ]
112216305 nuclear factor of activated T-cells, cytoplasmic 2 isoform X1 [KO:K17332 ]
112218821 nfatc3b; nuclear factor of activated T-cells, cytoplasmic 3 [KO:K17333 ]
112237386 nuclear factor of activated T-cells, cytoplasmic 3 isoform X1 [KO:K17333 ]
112260738 nfatc4; nuclear factor of activated T-cells, cytoplasmic 4 [KO:K17334 ]
112227350 LOW QUALITY PROTEIN: nuclear factor of activated T-cells, cytoplasmic 4 [KO:K17334 ]
112254359 itpr1b; inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
112262812 inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
112220132 inositol 1,4,5-trisphosphate receptor type 1-like isoform X1 [KO:K04958 ]
112255286 inositol 1,4,5-trisphosphate receptor type 1-like isoform X1 [KO:K04958 ]
112232084 inositol 1,4,5-trisphosphate receptor type 2 isoform X1 [KO:K04959 ]
112218717 inositol 1,4,5-trisphosphate receptor type 2 isoform X1 [KO:K04959 ]
112221364 inositol 1,4,5-trisphosphate receptor type 3-like isoform X1 [KO:K04960 ]
112258095 voltage-dependent anion-selective channel protein 1-like isoform X1 [KO:K05862 ]
112256114 vdac2; voltage-dependent anion-selective channel protein 2 [KO:K15040 ]
112219591 voltage-dependent anion-selective channel protein 2 isoform X1 [KO:K15041 ]
112262761 voltage-dependent anion-selective channel protein 2 isoform X1 [KO:K15041 ]
112248606 voltage-dependent anion-selective channel protein 2 isoform X1 [KO:K15041 ]
112257487 voltage-dependent anion-selective channel protein 2 isoform X1 [KO:K15041 ]
121840053 mcu; calcium uniporter protein, mitochondrial isoform X1 [KO:K20858 ]
Compound
C05981 Phosphatidylinositol-3,4,5-trisphosphate
Reference
Authors
Munoz-Espin D, Serrano M
Title
Cellular senescence: from physiology to pathology.
Journal
Reference
Authors
Childs BG, Durik M, Baker DJ, van Deursen JM
Title
Cellular senescence in aging and age-related disease: from mechanisms to therapy.
Journal
Reference
Authors
Sharpless NE, Sherr CJ
Title
Forging a signature of in vivo senescence.
Journal
Reference
Authors
Fridlyanskaya I, Alekseenko L, Nikolsky N
Title
Senescence as a general cellular response to stress: A mini-review.
Journal
Reference
Authors
Lujambio A
Title
To clear, or not to clear (senescent cells)? That is the question.
Journal
Reference
Authors
Di Mitri D, Alimonti A
Title
Non-Cell-Autonomous Regulation of Cellular Senescence in Cancer.
Journal
Reference
Authors
Francica P, Aebersold DM, Medova M
Title
Senescence as biologic endpoint following pharmacological targeting of receptor tyrosine kinases in cancer.
Journal
Reference
Authors
Bartling B
Title
Cellular senescence in normal and premature lung aging.
Journal
Reference
Authors
Munoz-Espin D, Canamero M, Maraver A, Gomez-Lopez G, Contreras J, Murillo-Cuesta S, Rodriguez-Baeza A, Varela-Nieto I, Ruberte J, Collado M, Serrano M
Title
Programmed cell senescence during mammalian embryonic development.
Journal
Reference
Authors
Herranz N, Gallage S, Gil J
Title
TORn about SASP regulation.
Journal
Reference
Authors
Martin N, Bernard D
Title
Calcium signaling and cellular senescence.
Journal
Reference
Authors
Farfariello V, Iamshanova O, Germain E, Fliniaux I, Prevarskaya N
Title
Calcium homeostasis in cancer: A focus on senescence.
Journal
Reference
Authors
McCarthy DA, Clark RR, Bartling TR, Trebak M, Melendez JA
Title
Redox control of the senescence regulator interleukin-1alpha and the secretory phenotype.
Journal
Reference
Authors
Donninger H, Schmidt ML, Mezzanotte J, Barnoud T, Clark GJ
Title
Ras signaling through RASSF proteins.
Journal
Reference
Authors
Barnoud T, Schmidt ML, Donninger H, Clark GJ
Title
The role of the NORE1A tumor suppressor in Oncogene-Induced Senescence.
Journal
Reference
Authors
Kang C, Xu Q, Martin TD, Li MZ, Demaria M, Aron L, Lu T, Yankner BA, Campisi J, Elledge SJ
Title
The DNA damage response induces inflammation and senescence by inhibiting autophagy of GATA4.
Journal
Reference
Authors
Cao X, Li M
Title
A New Pathway for Senescence Regulation.
Journal
Reference
Authors
Gire V, Dulic V
Title
Senescence from G2 arrest, revisited.
Journal
Reference
Authors
Mowla SN, Lam EW, Jat PS
Title
Cellular senescence and aging: the role of B-MYB.
Journal
Reference
Authors
Yao H, Chung S, Hwang JW, Rajendrasozhan S, Sundar IK, Dean DA, McBurney MW, Guarente L, Gu W, Ronty M, Kinnula VL, Rahman I
Title
SIRT1 protects against emphysema via FOXO3-mediated reduction of premature senescence in mice.
Journal
Reference
Authors
Hwang JW, Yao H, Caito S, Sundar IK, Rahman I
Title
Redox regulation of SIRT1 in inflammation and cellular senescence.
Journal
Related pathway
KO pathway
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