KEGG   PATHWAY: lcf04120
Entry
lcf04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Lates calcarifer (barramundi perch)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
lcf04120  Ubiquitin mediated proteolysis
lcf04120

Other DBs
GO: 0016567
Organism
Lates calcarifer (barramundi perch) [GN:lcf]
Gene
108872398  [KO:K10590] [EC:2.3.2.26]
108872411  [KO:K10611]
108872704  [KO:K10612]
108872734  [KO:K10264]
108873233  [KO:K03350]
108873400  [KO:K10614] [EC:2.3.2.26]
108873737  [KO:K03357]
108873753  [KO:K06689] [EC:2.3.2.23]
108873870  [KO:K10614] [EC:2.3.2.26]
108873974  [KO:K10594] [EC:2.3.2.26]
108874044  [KO:K13305] [EC:2.3.2.26]
108874065  [KO:K10607] [EC:2.3.2.27]
108874357  prkn; E3 ubiquitin-protein ligase parkin isoform X3 [KO:K04556] [EC:2.3.2.31]
108874609  [KO:K03359]
108875034  [KO:K10456]
108875378  ube2na; ubiquitin-conjugating enzyme E2Na [KO:K10580] [EC:2.3.2.23]
108875413  [KO:K10576] [EC:2.3.2.23]
108875765  [KO:K04678] [EC:2.3.2.26]
108875850  [KO:K10581] [EC:2.3.2.24]
108875866  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
108876107  socs3b; suppressor of cytokine signaling 3b [KO:K04696]
108876225  [KO:K10684] [EC:6.2.1.45]
108876268  [KO:K10593] [EC:2.3.2.26]
108876388  [KO:K10597] [EC:2.3.2.27]
108876401  [KO:K10592] [EC:2.3.2.26]
108876623  [KO:K06689] [EC:2.3.2.23]
108876703  [KO:K10582] [EC:2.3.2.23]
108876789  [KO:K02927]
108876816  ube2d1b; ubiquitin-conjugating enzyme E2 D1b isoform X1 [KO:K06689] [EC:2.3.2.23]
108877002  [KO:K10582] [EC:2.3.2.23]
108877518  [KO:K10099]
108877581  [KO:K03868] [EC:2.3.2.32]
108877636  [KO:K10577]
108877640  [KO:K04678] [EC:2.3.2.26]
108877760  nedd4a; E3 ubiquitin-protein ligase NEDD4a isoform X1 [KO:K10591] [EC:2.3.2.26]
108877873  [KO:K03178] [EC:6.2.1.45]
108878032  [KO:K09561] [EC:2.3.2.27]
108878122  [KO:K10588] [EC:2.3.2.26]
108878130  [KO:K03354]
108878134  [KO:K10575] [EC:2.3.2.23]
108878205  [KO:K03349]
108878231  rhobtb4; rho related BTB domain containing 4 isoform X1 [KO:K07868]
108878469  [KO:K10144] [EC:2.3.2.27]
108878492  [KO:K07868]
108878498  [KO:K10570]
108878670  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
108878677  [KO:K06689] [EC:2.3.2.23]
108878727  [KO:K03352]
108878863  [KO:K10601] [EC:2.3.2.27]
108878899  [KO:K03351]
108878908  [KO:K10595] [EC:2.3.2.26]
108878952  ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
108879239  [KO:K10575] [EC:2.3.2.23]
108879633  [KO:K10576] [EC:2.3.2.23]
108879918  [KO:K10573] [EC:2.3.2.23]
108880465  [KO:K10573] [EC:2.3.2.23]
108880588  elob; elongin-B [KO:K03873]
108880712  cblc; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
108881078  socs1a; suppressor of cytokine signaling 1a [KO:K04694]
108881190  [KO:K03363]
108881353  [KO:K03364]
108881406  cdc34a; cell division cycle 34 homolog (S. cerevisiae) a [KO:K02207] [EC:2.3.2.23]
108881483  [KO:K03871]
108881822  ube2wb; probable ubiquitin-conjugating enzyme E2 W-B [KO:K10688] [EC:2.3.2.23 2.3.2.25]
108881823  eloca; elongin C paralog a [KO:K03872]
108882131  [KO:K10686] [EC:6.2.1.64]
108882386  [KO:K10600]
108882581  [KO:K10291]
108882654  itchb; itchy E3 ubiquitin protein ligase b [KO:K05632] [EC:2.3.2.26]
108882775  [KO:K04725] [EC:2.3.2.27]
108883472  [KO:K03363]
108883480  [KO:K10603]
108883529  [KO:K03869]
108883587  [KO:K03364]
108883610  [KO:K02207] [EC:2.3.2.23]
108883656  [KO:K02927]
108883827  fzr1b; fizzy-related protein homolog [KO:K03364]
108884057  [KO:K04554] [EC:2.3.2.23]
108884549  [KO:K03358]
108884801  [KO:K10586] [EC:2.3.2.23]
108885000  [KO:K03347]
108885652  [KO:K10686] [EC:6.2.1.64]
108886383  [KO:K10596] [EC:2.3.2.27]
108886386  [KO:K04707] [EC:2.3.2.27]
108886534  pias1b; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
108886600  cul3b; cullin-3b [KO:K03869]
108886610  [KO:K25228]
108886614  [KO:K10140]
108886754  ube2ib; SUMO-conjugating enzyme UBC9-A [KO:K10577]
108886789  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
108886853  [KO:K10260]
108887096  [KO:K10687] [EC:2.3.2.34]
108887289  [KO:K10583] [EC:2.3.2.23]
108887802  [KO:K03175] [EC:2.3.2.27]
108887821  [KO:K10610]
108887872  [KO:K04706] [EC:2.3.2.-]
108888006  [KO:K10609]
108888466  [KO:K04694]
108889222  [KO:K20217] [EC:2.3.2.23]
108889229  [KO:K20217] [EC:2.3.2.23]
108889524  birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
108889814  [KO:K10615] [EC:2.3.2.26]
108889969  [KO:K03178] [EC:6.2.1.45]
108890157  ube2nb; ubiquitin-conjugating enzyme E2Nb [KO:K10580] [EC:2.3.2.23]
108890416  [KO:K03873]
108890706  [KO:K06688] [EC:2.3.2.23]
108891035  [KO:K10579] [EC:2.3.2.34]
108891356  [KO:K10598] [EC:5.2.1.8]
108891461  [KO:K09561] [EC:2.3.2.27]
108891574  [KO:K04556] [EC:2.3.2.31]
108891698  [KO:K10602] [EC:2.3.2.27]
108891883  [KO:K08285] [EC:2.3.2.27]
108893071  [KO:K10260]
108893123  [KO:K16065] [EC:2.3.2.27]
108893221  [KO:K08770]
108893364  [KO:K10574] [EC:2.3.2.23]
108893387  birc2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
108893401  ube2g1a; ubiquitin-conjugating enzyme E2 G1a [KO:K10575] [EC:2.3.2.23]
108893670  [KO:K03094]
108893685  [KO:K04707] [EC:2.3.2.27]
108893782  [KO:K10447]
108893895  [KO:K10608] [EC:2.3.2.27]
108893905  [KO:K03355]
108894174  [KO:K10594] [EC:2.3.2.26]
108895269  [KO:K04555] [EC:2.3.2.23]
108895391  [KO:K10573] [EC:2.3.2.23]
108895396  [KO:K10573] [EC:2.3.2.23]
108895402  cul4b; cullin-4B [KO:K10609]
108895696  [KO:K02977]
108895750  [KO:K10606] [EC:2.3.2.27]
108895890  [KO:K06643] [EC:2.3.2.27]
108896272  [KO:K03348]
108896304  [KO:K10589] [EC:2.3.2.26]
108896543  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
108896560  [KO:K10699] [EC:6.2.1.45]
108896669  cop1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
108897366  [KO:K06689] [EC:2.3.2.23]
108897677  [KO:K04552] [EC:2.3.2.23]
108898298  [KO:K05633] [EC:2.3.2.26]
108898318  [KO:K03870]
108898538  [KO:K10585] [EC:2.3.2.23]
108898653  [KO:K04678] [EC:2.3.2.26]
108898747  [KO:K10605] [EC:2.3.2.27]
108898993  [KO:K04552] [EC:2.3.2.23]
108899033  [KO:K25229]
108899054  pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
108899176  [KO:K10599] [EC:2.3.2.27]
108899221  fbxw11a; F-box and WD repeat domain-containing 11-B [KO:K03362]
108899263  ube2ka; ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) isoform X1 [KO:K04649] [EC:2.3.2.23]
108899691  [KO:K02207] [EC:2.3.2.23]
108900056  [KO:K22517] [EC:2.3.2.27]
108900059  [KO:K10612]
108900269  ube2e1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
108900280  [KO:K20217] [EC:2.3.2.23]
108900413  [KO:K10582] [EC:2.3.2.23]
108900731  skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
108901249  [KO:K03353]
108901601  mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
108901782  [KO:K10578] [EC:2.3.2.23]
108901897  [KO:K04506] [EC:2.3.2.27]
108901923  [KO:K12456]
108901928  [KO:K10571]
108901942  [KO:K05630] [EC:2.3.2.26]
108902110  itcha; itchy E3 ubiquitin protein ligase a [KO:K05632] [EC:2.3.2.26]
108902282  [KO:K10685] [EC:6.2.1.45]
108902294  [KO:K10614] [EC:2.3.2.26]
108902479  si:rp71-68n21.9; kelch-like protein 9 [KO:K10447]
108902540  [KO:K10587] [EC:2.3.2.26]
108902726  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
108902770  [KO:K02927]
108902984  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
lcf03050  Proteasome
KO pathway
ko04120   

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