Entry
Name
Endocytosis - Pseudoliparis swirei (Mariana hadal snailfish)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Other DBs
Organism
Pseudoliparis swirei (Mariana hadal snailfish) [GN:
pswi ]
Gene
130188054 zgc:86896; actin-related protein 2/3 complex subunit 1A-A isoform X1 [KO:K05757 ]
130188434 hgs; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
130188853 vps36; vacuolar protein-sorting-associated protein 36 [KO:K12190 ]
130189853 rab11fip4b; rab11 family-interacting protein 4B isoform X1 [KO:K12485 ]
130190226 vps37c; vacuolar protein sorting-associated protein 37C isoform X1 [KO:K12185 ]
130190570 vps37a; vacuolar protein sorting-associated protein 37A [KO:K12185 ]
130190780 sh3gl2a; SH3 domain containing GRB2 like 2a, endophilin A1 [KO:K11247 ]
130191597 pard6gb; par-6 family cell polarity regulator gamma b isoform X1 [KO:K06093 ]
130192276 vps35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
130192900 vps28; vacuolar protein sorting-associated protein 28 homolog [KO:K12184 ]
130193014 arfgap2; ADP-ribosylation factor GTPase-activating protein 2 [KO:K12493 ]
130193098 vps26a; vacuolar protein sorting-associated protein 26A [KO:K18466 ]
130193305 rufy2; RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482 ]
130193477 zfyve9b; zinc finger FYVE domain-containing protein 9 [KO:K04679 ]
130193549 eps15; LOW QUALITY PROTEIN: epidermal growth factor receptor substrate 15 [KO:K12472 ]
130194316 dnajc6; LOW QUALITY PROTEIN: putative tyrosine-protein phosphatase auxilin [KO:K09526 ]
130195678 vps4a; vacuolar protein sorting-associated protein 4A [KO:K12196 ]
130195765 wasla; WASP like actin nucleation promoting factor a isoform X1 [KO:K23612 ]
130195873 pdcd6ip; programmed cell death 6-interacting protein isoform X1 [KO:K12200 ]
130195896 iqsec3b; IQ motif and SEC7 domain-containing protein 3 isoform X1 [KO:K12495 ]
130196045 git2a; ARF GTPase-activating protein GIT2a isoform X1 [KO:K12487 ]
130196218 rab11fip1a; rab11 family-interacting protein 1 isoform X1 [KO:K12484 ]
130196500 wipf3; WAS/WASL-interacting protein family member 3 isoform X1 [KO:K19475 ]
130196952 smap2; stromal membrane-associated protein 2 isoform X1 [KO:K12486 ]
130197664 zfyve9a; zinc finger FYVE domain-containing protein 9 isoform X1 [KO:K04679 ]
130197668 agap3; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12491 ]
130198142 vps4b; vacuolar protein sorting-associated protein 4B isoform X1 [KO:K12196 ]
130198881 arfgef2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 isoform X1 [KO:K18442 ]
130199203 iqsec2b; LOW QUALITY PROTEIN: IQ motif and SEC7 domain-containing protein 1 [KO:K12495 ]
130200064 acap3a; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12489 ]
130200135 agap2; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K17848 ]
130200227 iqsec3a; IQ motif and SEC7 domain-containing protein 3 isoform X1 [KO:K12495 ]
130200306 waslb; WASP like actin nucleation promoting factor b isoform X1 [KO:K23612 ]
130201315 ldlrap1b; low density lipoprotein receptor adapter protein 1b isoform X1 [KO:K12474 ]
130201812 vps29; vacuolar protein sorting-associated protein 29 [KO:K18467 ]
130201893 asap3; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12488 ]
130201928 asap2a; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2a isoform X1 [KO:K12488 ]
130202135 si:dkey-71h2.2; low density lipoprotein receptor adapter protein 1 [KO:K12474 ]
130202299 igf2r; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
130202716 asap2b; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2b [KO:K12488 ]
130202728 vta1; vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199 ]
130203220 rab11fip3; rab11 family-interacting protein 3 isoform X1 [KO:K12485 ]
130203561 vps25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
130204344 agap1; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12491 ]
130204755 bin1b; myc box-dependent-interacting protein 1b isoform X1 [KO:K12562 ]
130204888 git2b; ARF GTPase-activating protein GIT2b isoform X1 [KO:K12487 ]
130204922 zfyve16; zinc finger FYVE domain-containing protein 16 [KO:K04679 ]
130205912 arfgef1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1 [KO:K18442 ]
130206000 sh3kbp1; SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470 ]
130206045 asap1b; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488 ]
130206755 gbf1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
130207854 arfgap1; ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
130208149 capzb; F-actin-capping protein subunit beta isoform X1 [KO:K10365 ]
130208945 iqsec1b; IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495 ]
130209586 vps37d; vacuolar protein sorting-associated protein 37D [KO:K12185 ]
130209729 psd2; LOW QUALITY PROTEIN: PH and SEC7 domain-containing protein 2 [KO:K12494 ]
130209988 rufy1; RUN and FYVE domain-containing protein 1 isoform X1 [KO:K12482 ]
130210698 zgc:162872; LOW QUALITY PROTEIN: BAR_ACAPs and ArfGap_ACAP domain-containing protein [KO:K12489 ]
130211709 ldlrap1a; low density lipoprotein receptor adapter protein 1a isoform X1 [KO:K12474 ]
130211791 si:dkey-19b23.8; uncharacterized protein si:dkey-19b23.8 [KO:K12474 ]
130212089 arap2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 [KO:K18440 ]
130212278 acap1; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 [KO:K12489 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
pswi04060 Cytokine-cytokine receptor interaction
pswi04070 Phosphatidylinositol signaling system
pswi04130 SNARE interactions in vesicular transport
KO pathway