SSDB Best Search Result

Entry:mra:MRA_0677 (1316 a.a.)
Name:DNA-directed RNA polymerase subunit beta'
KO:K03046 DNA-directed RNA polymerase subunit beta'

Search Result : 213 hits (reference genome only)

                 Entry                                       KO      len   SW-score  identity  overlap  
------------------------------------------------------------------ -------------------------------------
mtu:Rv0668 DNA-directed RNA polymerase subunit beta'    K03046    1316     8640     1.000      1316    
mtc:MT0696 DNA-directed RNA polymerase, beta-prime subu K03046    1316     8629     0.999      1316    
mle:ML1890 [beta]' subunit of RNA polymerase            K03046    1316     8300     0.957      1316    
msm:MSMEG_1368 DNA-directed RNA polymerase, beta' subun K03046    1317     7949     0.914      1318    
mab:MAB_3868c DNA-directed RNA polymerase beta' chain   K03046    1319     7872     0.898      1320    
rha:RHA1_ro01961 DNA-directed RNA polymerase beta' subu K03046    1318     7663     0.881      1319    
amd:AMED_0657 DNA-directed RNA polymerase subunit beta' K03046    1303     6953     0.798      1319    
cdi:DIP0447 DNA-directed RNA polymerase beta' chain     K03046    1336     6437     0.740      1333    
cgl:Cgl0489 DNA-directed RNA polymerase beta' subunit/1 K03046    1333     6400     0.730      1332    
sgu:SGLAU_20040 DNA-directed RNA polymerase subunit bet K03046    1299     6239     0.720      1319    
sct:SCAT_3567 RNA polymerase (beta' subunit)            K03046    1299     6225     0.720      1319    
sco:SCO4655 DNA-directed RNA polymerase beta' chain (fr K03046    1299     6216     0.718      1319    
sma:SAVERM_4915 RNA polymerase beta prime subunit       K03046    1299     6204     0.715      1319    
sgr:SGR_2868 RNA polymerase beta prime subunit          K03046    1299     6165     0.717      1320    
ksk:KSE_31990 putative DNA-directed RNA polymerase subu K03046    1297     6114     0.705      1324    
blo:BL1204 RpoC                                         K03046    1345     5174     0.598      1341    
mta:Moth_2467 DNA-directed RNA polymerase subunit beta' K03046    1164     4425     0.559      1296    
cbo:CBO3487 DNA-directed RNA polymerase beta' chain     K03046    1178     4387     0.546      1293    
cac:CA_C3142 DNA-dependent RNA polymerase beta' subunit K03046    1182     4298     0.535      1289    
bsu:BSU01080 DNA-directed RNA polymerase subunit beta'  K03046    1199     4291     0.531      1315    
cpe:CPE2412 RNA polymerase beta' subunit                K03046    1178     4267     0.536      1307    
bce:BC0123 DNA-directed RNA polymerase beta' chain      K03046    1203     4254     0.526      1316    
btk:BT9727_0099 DNA-directed RNA polymerase, beta' subu K03046    1203     4249     0.526      1316    
ban:BA_0103 DNA-directed RNA polymerase, beta' subunit  K03046    1203     4247     0.526      1316    
efa:EF3237 DNA-directed RNA polymerase, beta-prime subu K03046    1217     4213     0.513      1334    
cdf:CD630_00670 DNA-directed RNA polymerase subunit bet K03046    1161     4195     0.533      1295    
lmo:lmo0259 DNA-directed RNA polymerase subunit beta'   K03046    1201     4183     0.527      1313    
lin:rpoC RNA polymerase (beta' subunit)                 K03046    1201     4183     0.527      1313    
sau:SA0501 RNA polymerase beta-prime chain              K03046    1207     4133     0.516      1321    
ser:SERP0184 DNA-directed RNA polymerase, beta' subunit K03046    1207     4128     0.515      1330    
lcb:LCABL_26800 DNA-directed RNA polymerase subunit bet K03046    1220     4112     0.496      1334    
sao:SAOUHSC_00525 DNA-directed RNA polymerase subunit b K03046    1198     4103     0.515      1312    
cau:Caur_0873 DNA-directed RNA polymerase, beta' subuni K03046    1503     4084     0.494      1443    
lpl:lp_1022 DNA-directed RNA polymerase, beta' subunit  K03046    1213     4041     0.499      1336    
spy:SPy_0099 DNA-dependent RNA polymerase, B' subunit   K03046    1213     4008     0.496      1331    
smu:SMU_1989 DNA-dependent RNA polymerase, beta' subuni K03046    1218     3975     0.499      1308    
spr:spr1776 DNA-dependent RNA polymerase                K03046    1225     3954     0.491      1332    
spn:SP_1960 DNA-directed RNA polymerase, beta' subunit  K03046    1225     3953     0.491      1332    
llm:llmg_1981 DNA-directed RNA polymerase, beta' subuni K03046    1207     3923     0.497      1306    
ljo:LJ_0333 DNA-directed RNA polymerase beta' chain     K03046    1224     3909     0.481      1348    
lla:L0138 DNA-directed RNA polymerase beta' chain       K03046    1198     3877     0.496      1301    
gsu:GSU2862 DNA-directed RNA polymerase, beta-prime sub K03046    1395     3603     0.442      1499    
tth:TT_C1460 DNA-directed RNA polymerase beta' chain    K03046    1513     3585     0.448      1525    
acb:A1S_0288 DNA-directed RNA polymerase beta' chain    K03046    1397     3550     0.436      1491    
pde:Pden_0749 DNA-directed RNA polymerase subunit beta' K03046    1402     3542     0.442      1488    
rru:Rru_A2694 DNA-directed RNA polymerase               K03046    1393     3537     0.434      1488    
aci:ACIAD0308 DNA-directed RNA polymerase beta' chain ( K03046    1413     3536     0.433      1491    
bpe:BP0016 DNA-directed RNA polymerase beta' chain      K03046    1414     3524     0.439      1507    
bma:BMA2640 DNA-directed RNA polymerase, beta subunit   K03046    1412     3517     0.427      1510    
bps:BPSL3220 DNA-directed RNA polymerase beta' chain    K03046    1412     3517     0.427      1510    
rso:RSc3033 probable dna-directed rna polymerase (beta' K03046    1409     3513     0.434      1503    
reh:H16_A3496 DNA-directed RNA polymerase beta prime su K03046    1415     3511     0.437      1490    
lpn:lpg0323 DNA-directed RNA polymerase beta' subunit   K03046    1415     3511     0.429      1519    
ccr:CC_0503 DNA-directed RNA polymerase, beta' subunit  K03046    1396     3510     0.440      1464    
bxe:Bxe_A0307 DNA-directed RNA polymerase subunit beta' K03046    1412     3499     0.435      1474    
rpa:TX73_016890 DNA-directed RNA polymerase subunit bet K03046    1400     3490     0.436      1475    
bja:bll5409 DNA-directed RNA polymerase beta' chain     K03046    1398     3489     0.432      1495    
eba:ebA3819 DNA-directed RNA polymerase, beta' chain    K03046    1409     3488     0.442      1474    
lil:LA_3419 DNA-directed RNA polymerase subunit beta'   K03046    1404     3487     0.434      1490    
mca:MCA1067 DNA-directed RNA polymerase, beta' subunit  K03046    1400     3471     0.433      1491    
nme:NMB0133 DNA-directed RNA polymerase, beta' subunit  K03046    1391     3464     0.428      1490    
ngo:NGO_1850 DNA-directed RNA polymerase subunit beta'  K03046    1391     3459     0.430      1475    
vch:VC_0329 DNA-directed RNA polymerase, beta' subunit  K03046    1401     3459     0.427      1515    
dra:DR_0911 DNA-directed RNA polymerase, beta` subunit  K03046    1546     3458     0.431      1527    
dvu:DVU_2929 DNA-directed RNA polymerase, beta prime su K03046    1385     3455     0.430      1464    
vpa:VP2921 DNA-directed RNA polymerase, beta' subunit   K03046    1400     3454     0.424      1513    
vvu:VV1_1212 DNA-directed RNA polymerase, beta' subunit K03046    1400     3450     0.429      1481    
xac:XAC0966 RNA polymerase beta' subunit                K03046    1404     3447     0.438      1461    
xom:XOO3393 RNA polymerase beta' subunit                K03046    1405     3443     0.437      1461    
mlo:mlr0277 RNA polymerase beta subunit                 K03046    1398     3443     0.430      1482    
bmf:BAB1_1263 RNA polymerase, alpha subunit:RNA polymer K03046    1400     3442     0.434      1483    
bms:BR1242 DNA-directed RNA polymerase, beta' subunit   K03046    1400     3440     0.433      1483    
bme:BMEI0750 DNA-directed RNA polymerase beta' chain    K03046    1400     3440     0.433      1483    
rsp:RSP_1712 DNA-directed RNA polymerase beta' subunit  K03046    1415     3439     0.436      1479    
apl:APL_1728 DNA-directed RNA polymerase beta' chain    K03046    1412     3438     0.424      1494    
xcc:XCC0889 RNA polymerase beta' subunit                K03046    1405     3434     0.437      1461    
smar:SM39_4229 RNA polymerase, beta prime subunit       K03046    1407     3432     0.421      1504    
hin:HI_0514 DNA-directed RNA polymerase, beta' chain (r K03046    1415     3430     0.432      1475    
eca:ECA0224 DNA-directed RNA polymerase beta' subunit   K03046    1407     3417     0.430      1464    
cro:ROD_37641 DNA-directed RNA polymerase, beta'-subuni K03046    1407     3416     0.422      1479    
ftu:FTT_0145 DNA-directed RNA polymerase, beta subunit  K03046    1417     3416     0.432      1460    
seo:STM14_4991 DNA-directed RNA polymerase subunit beta K03046    1407     3414     0.426      1464    
ddd:Dda3937_00221 RNA polymerase, beta prime subunit    K03046    1407     3414     0.416      1521    
sty:STY3731 DNA-directed RNA polymerase, beta'-subunit  K03046    1407     3414     0.426      1464    
stm:STM4154 RNA polymerase, beta prime subunit          K03046    1407     3414     0.426      1464    
sfl:SF4061 DNA-directed RNA polymerase subunit beta'    K03046    1407     3413     0.420      1479    
ecs:ECs_4911 RNA polymerase beta prime subunit          K03046    1407     3413     0.420      1479    
eco:b3988 RNA polymerase subunit beta'                  K03046    1407     3413     0.420      1479    
ecj:JW3951 RNA polymerase, beta prime subunit           K03046    1407     3413     0.420      1479    
ece:Z5561 RNA polymerase, beta prime subunit            K03046    1407     3413     0.420      1479    
yen:YE0287 DNA-directed RNA polymerase beta' chain      K03046    1406     3412     0.420      1495    
ctb:CTL0566 DNA-directed RNA polymerase beta-prime chai K03046    1396     3411     0.424      1488    
atu:Atu1955 DNA-directed RNA polymerase beta' chain     K03046    1402     3411     0.430      1478    
yps:YPTB0284 DNA-directed RNA polymerase beta chain     K03046    1406     3410     0.420      1495    
ypk:y0485 RNA polymerase, beta prime subunit            K03046    1418     3410     0.420      1495    
ype:YPO3746 DNA-directed RNA polymerase beta' chain     K03046    1406     3410     0.420      1495    
ctr:CT_314 DNA-directed RNA polymerase subunit beta'    K03046    1396     3407     0.421      1488    
sme:SMc01316 Probable DNA-directed RNA polymerase beta' K03046    1401     3406     0.429      1482    
pae:PA4269 DNA-directed RNA polymerase subunit beta'    K03046    1399     3406     0.424      1477    
hdu:HD_1876 RNA polymerase beta' subunit                K03046    1420     3404     0.423      1491    
pmu:PM1736 RpoC                                         K03046    1417     3404     0.426      1476    
enc:ECL_00246 DNA-directed RNA polymerase subunit beta' K03046    1407     3403     0.421      1479    
ret:RHE_CH01668 DNA-directed RNA polymerase beta` chain K03046    1402     3403     0.426      1507    
fnu:FN2035 DNA-directed RNA polymerase beta' chain      K03046    1319     3403     0.428      1446    
kpn:KPN_04366 DNA-directed RNA polymerase beta' subunit K03046    1407     3398     0.423      1479    
vfi:VF_2412 RNA polymerase, beta prime subunit          K03046    1401     3398     0.423      1498    
aae:aq_1945 RNA polymerase beta prime subunit           K03046    1574     3398     0.402      1589    
xfa:XF_2632 RNA polymerase beta' subunit                K03046    1430     3397     0.428      1466    
eam:EAMY_0240 DNA-directed RNA polymerase beta' chain   K03046    1407     3394     0.420      1479    
rle:RL1767 DNA-directed RNA polymerase beta' chain      K03046    1402     3386     0.424      1507    
cpn:CPn_0082 RNA Polymerase Beta'                       K03046    1393     3384     0.421      1475    
hth:HTH_0857 DNA-directed RNA polymerase beta' subunit  K03046    1566     3381     0.408      1593    
avn:Avin_06180 DNA-directed RNA polymerase, beta' subun K03046    1399     3365     0.419      1497    
son:SO_0225 DNA-directed RNA polymerase beta' subunit R K03046    1405     3362     0.417      1502    
psb:Psyr_4554 DNA-directed RNA polymerase subunit beta' K03046    1399     3355     0.423      1477    
cte:CT0156 DNA-directed RNA polymerase, beta-prime subu K03046    1490     3355     0.412      1573    
ppu:PP_0448 DNA-directed RNA polymerase subunit beta'   K03046    1399     3353     0.424      1477    
tde:TDE_2420 DNA-directed RNA polymerase, beta' subunit K03046    1424     3352     0.417      1508    
pst:PSPTO_0620 DNA-directed RNA polymerase, beta' subun K03046    1399     3351     0.422      1477    
rpr:RP141 DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN  K03046    1372     3337     0.427      1481    
tpa:TP_0242 DNA-directed RNA polymerase, beta' subunit  K03046    1416     3322     0.411      1508    
buc:BU033 DNA-directed RNA polymerase beta' chain       K03046    1407     3296     0.414      1474    
rco:RC0182 DNA-directed RNA polymerase beta prime chain K03046    1372     3277     0.421      1481    
bbu:BB_0388 DNA-directed RNA polymerase, beta' subunit  K03046    1377     3275     0.412      1492    
bfr:BF4191 DNA-directed RNA polymerase beta' chain      K03046    1427     3198     0.410      1500    
bth:BT_2733 DNA-directed RNA polymerase beta' chain     K03046    1427     3160     0.407      1500    
fps:FP1175 DNA-directed RNA polymerase beta' subunit Rp K03046    1438     3132     0.402      1505    
wol:WD_0024 DNA-directed RNA polymerase, beta/beta' sub K13797    2837     3033     0.390      1494    
hpy:HP_1198 DNA-directed RNA polymerase, beta subunit ( K13797    2890     2927     0.381      1605    
hpj:jhp_1121 DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT  K13797    2890     2927     0.381      1605    
cje:Cj0479 DNA-directed RNA polymerase subunit beta'    K03046    1517     2923     0.368      1616    
mpn:MPN_515 DNA-directed RNA polymerase beta' chain     K03046    1290     2891     0.394      1324    
mge:MG_340 DNA-directed RNA polymerase, beta' subunit   K03046    1292     2885     0.390      1324    
tma:TM0459 DNA-directed RNA polymerase, beta' subunit   K03046    1690     2659     0.365      1703    
tel:tll0641 RNA polymerase gamma-subunit                K03046     622     2216     0.557      639     
npu:Npun_F4986 DNA-directed RNA polymerase, gamma subun K03046     625     2198     0.548      642     
gvi:glr4277 ORF_ID:glr4277                              K03046     608     2190     0.525      684     
ana:alr1595 RNA polymerase gamma subunit                K03046     625     2190     0.547      642     
syc:syc2508_d RNA polymerase gamma-subunit              K03046     624     2174     0.541      640     
syf:Synpcc7942_1523 DNA-directed RNA polymerase         K03046     624     2173     0.541      640     
syn:slr1265 RNA polymerase gamma-subunit                K03046     626     2126     0.534      639     
pma:Pro_1639 DNA-directed RNA polymerase beta' subunit/ K03046     634     2101     0.534      642     
tps:THAPSDRAFT_bd997 hypothetical protein                          696     1572     0.419      669     
mtr:120580069 DNA-directed RNA polymerase subunit beta' K03046     686     1527     0.443      607     
csv:3429303 RNA polymerase beta' subunit                K03046     680     1502     0.416      634     
mdm:71430804 RNA polymerase beta' subunit               K03046     680     1501     0.427      607     
gmx:3989292 RNA polymerase beta' subunit                K03046     687     1500     0.432      607     
vvi:4025098 RNA polymerase beta' subunit                K03046     682     1495     0.430      607     
sly:3950486 RNA polymerase beta subunit                 K03046     688     1491     0.424      604     
cit:4271234 RNA polymerase beta' subunit                K03046     680     1489     0.423      607     
ath:ArthCp013 RNA polymerase beta' subunit              K03046     680     1489     0.421      605     
zma:845226 RNA polymerase beta' subunit                 K03046     683     1464     0.399      694     
osa:3131433 RNA polymerase beta' subunit                K03046     682     1464     0.392      693     
rcu:11542294 RNA polymerase beta' subunit               K03046     654     1456     0.425      604     
vg:77947708 Rhizobium phage RHph_Y65; DNA-directed RNA            1127     1369     0.279      1235    
nmr:Nmar_0348 DNA-directed RNA polymerase subunit A'    K03041    1263     1057     0.276      1075    
cre:ChreCp069 chloroplast RNA polymerase beta' chain    K03046     489     1003     0.519      322     
pfu:PF1563 DNA-directed RNA polymerase subunit a'       K03041     907      863     0.299      693     
tko:TK1082 DNA-directed RNA polymerase, subunit A'      K03041     906      847     0.269      897     
ame:725552 DNA-directed RNA polymerase III subunit RPC1 K03018    2011      831     0.251      1361    
tca:656547 DNA-directed RNA polymerase III subunit RPC1 K03018    1390      830     0.271      1186    
hal:VNG_2664G DNA-directed RNA polymerase subunit A     K03041     926      820     0.277      918     
pti:PHATRDRAFT_42100 rna polymerase C 157 kDa           K03018    1281      816     0.263      1087    
afu:AF_1888 DNA-directed RNA polymerase, subunit A' (rp K03041     867      814     0.292      644     
mth:MTH_1051 DNA-dependent RNA polymerase, subunit A'   K03041     870      804     0.291      693     
mba:Mbar_A3692 DNA-directed RNA polymerase, subunit A'  K03041     880      791     0.271      878     
hvo:HVO_0349 DNA-directed RNA polymerase subunit A'     K03041     976      786     0.264      901     
cel:CELE_C42D4.8 DNA-directed RNA polymerase subunit    K03018    1400      771     0.252      1174    
pai:PAE0666 DNA-directed RNA polymerase subunit A' (rpo K03041     884      767     0.288      650     
aga:1278527 DNA-directed RNA polymerase III subunit RPC K03018    1379      766     0.261      1136    
hma:rrnAC2428 DNA-directed RNA polymerase subunit A     K03041     969      763     0.252      900     
aag:5573621 DNA-directed RNA polymerase III subunit RPC K03018    1378      761     0.260      1134    
ani:ANIA_10316 hypothetical protein                     K03018    1445      756     0.240      1478    
sce:YDL140C DNA-directed RNA polymerase II core subunit K03006    1733      755     0.268      848     
ola:101157164 DNA-directed RNA polymerase III subunit R K03018    1390      753     0.259      1209    
mmp:MMP1363 RNA polymerase, alpha subunit               K03041     889      751     0.286      675     
sso:SSO0225 DNA-directed RNA polymerase, subunit A' (rp K03041     880      746     0.282      698     
bmor:101739499 DNA-directed RNA polymerase III subunit  K03018    1392      741     0.262      1152    
aor:AO090020000625 unnamed protein product; RNA polymer K03018    1447      741     0.243      1414    
dre:572258 DNA-directed RNA polymerase III subunit RPC1 K03018    1390      740     0.260      1225    
kla:KLLA0_F05071g uncharacterized protein               K03006    1720      736     0.267      744     
afm:AFUA_3G14370 DNA-directed RNA polymerase III larges K03018    1453      733     0.242      1417    
sai:Saci_0692 DNA-directed RNA polymerase subunit A'    K03041     880      729     0.277      696     
cal:CAALFM_CR10680WA DNA-directed RNA polymerase II cor K03006    1728      724     0.223      1387    
rno:361102 DNA-directed RNA polymerase III subunit RPC1 K03018    1390      720     0.262      1139    
tac:Ta0391 probable DNA-directed RNA polymerase, chain  K03041     885      720     0.272      685     
spo:2541094 DNA-directed RNA polymerase III complex lar K03018    1405      719     0.241      1172    
gga:423727 DNA-directed RNA polymerase III subunit RPC1 K03018    1390      718     0.263      1151    
hsa:11128 RNA polymerase III subunit A                  K03018    1390      717     0.266      1139    
mcc:100424410 DNA-directed RNA polymerase III subunit R K03018    1390      717     0.266      1139    
ape:APE_1853.1 DNA-directed RNA polymerase subunit A    K03041     891      717     0.288      680     
ocu:100355224 DNA-directed RNA polymerase III subunit R K03018    1390      715     0.267      1139    
dme:Dmel_CG17209 RNA polymerase III subunit A           K03018    1383      715     0.247      1390    
mmu:218832 polymerase (RNA) III (DNA directed) polypept K03018    1390      714     0.261      1144    
ecb:100073003 DNA-directed RNA polymerase III subunit R K03018    1390      713     0.265      1139    
xtr:100124725 DNA-directed RNA polymerase III subunit R K03018    1390      711     0.255      1227    
fca:101094050 DNA-directed RNA polymerase III subunit R K03018    1390      708     0.264      1141    
ssc:100156229 DNA-directed RNA polymerase III subunit R K03018    1390      708     0.259      1170    
cfa:479256 DNA-directed RNA polymerase III subunit RPC1 K03018    1402      707     0.263      1150    
bta:540308 DNA-directed RNA polymerase III subunit RPC1 K03018    1390      707     0.266      1141    
mdo:100011598 RNA polymerase III subunit A              K03018    1390      705     0.266      1146    
ddi:DDB_G0279193 RNA polymerase II core subunit         K03006    1727      696     0.247      1058    
pfa:C2H85_pgp06 RNA polymerase beta subunit, putative              575      691     0.266      587     
ncr:NCU02103 DNA-directed RNA polymerase II largest sub K03006    1761      675     0.242      1042    
fgr:FGSG_13662 DNA-directed RNA polymerase III largest  K03018    1450      667     0.240      1235    
mgr:MGG_04652 DNA-directed RNA polymerase II largest su K03006    1757      662     0.245      1038    
cne:CNE03720 DNA-directed RNA polymerase II largest sub K03006    1786      653     0.264      726     
xla:108711840 DNA-directed RNA polymerase II subunit RP K03006    1968      650     0.270      670     
lma:LMJF_34_0360 putative DNA-directed RNA polymerase I K03018    1582      610     0.253      775     
tbr:Tb927.4.5020 RNA polymerase IIA largest subunit     K03006    1765      569     0.255      776     
mja:MJ_1042 DNA-directed RNA polymerase, subunit A' (rp K03041    1341      430     0.289      433     
llt:CVCAS_0593 nisin biosynthesis two-component system, K20488     229      110     0.254      126     
ag:AAY32951 lincosamide nucleotidyltransferase C        K19545     164      100     0.236      165     

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