PATHWAY: vpd02010 Help
Entry
Name
ABC transporters - Variovorax paradoxus B4
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Variovorax paradoxus B4 [GN:
vpd ]
Gene
VAPA_1c25910 cysP; putative sulfate ABC transporter, sulfate-binding protein CysP [KO:K02048 ]
VAPA_1c39580 putative aliphatic sulfonates/taurine ABC transporter, periplasmic binding protein [KO:K15551 ]
VAPA_2c03750 tauA; putative taurine ABC transporter, taurine-binding protein TauA [KO:K15551 ]
VAPA_1c39560 putative aliphatic sulfonates/taurine ABC transporter, permease protein [KO:K15552 ]
VAPA_1c39820 putative aliphatic sulfonates ABC transporter, aliphaticic sulfonates-binding protein [KO:K15553 ]
VAPA_1c39890 putative aliphatic sulfonates ABC transporter, aliphatic sulfonates-binding protein [KO:K15553 ]
VAPA_1c25750 ssuA; putative aliphatic sulfonates ABC transporter, substrate-binding protein SsuA [KO:K15553 ]
VAPA_1c39910 putative aliphatic sulfonates ABC transporter, substrate-binding protein [KO:K15553 ]
VAPA_1c25780 ssuC; putative aliphatic sulfonates ABC transporter, permease protein SsuC [KO:K15554 ]
VAPA_1c42210 modA; putative molybdenum ABC transporter, molybdenum-binding protein ModA [KO:K02020 ]
VAPA_1c30340 proX; glycine betaine/L-proline ABC transporter, glycine betaine/L-proline-binding protein ProX [KO:K02002 ]
VAPA_1c30330 proW; glycine betaine/L-proline ABC transporter, permease protein ProW [KO:K02001 ]
VAPA_1c12170 putative ABC transporter, substrate-binding protein, toluene tolerance Ttg2D-like protein [KO:K07323 ]
VAPA_1c50190 putative branched-chain amino acid ABC transporter, permease protein [KO:K23535 ]
VAPA_1c50200 putative branched-chain amino acid ABC transporter, permease protein [KO:K23536 ]
VAPA_1c04100 rbsB; putative ribose ABC transporter, ribose-binding protein RbsB [KO:K10439 ]
VAPA_1c41530 putative sn-glycerol-3-phosphate ABC transporter, sn-glycerol-3-phosphate -binding protein [KO:K05813 ]
VAPA_1c42890 ugpB; sn-glycerol-3-phosphate ABC transporter, sn-glycerol-3-phosphate-binding protein UgpB [KO:K05813 ]
VAPA_1c41520 putative sn-glycerol-3-phosphate ABC transporter, permease protein [KO:K05814 ]
VAPA_1c42900 ugpA; sn-glycerol-3-phosphate ABC transporter, permease protein UgpA [KO:K05814 ]
VAPA_1c41510 putative sn-glycerol-3-phosphate ABC transporter, permease protein [KO:K05815 ]
VAPA_1c42910 ugpE; sn-glycerol-3-phosphate ABC transporter, permease protein UgpE [KO:K05815 ]
VAPA_1c32190 putative phosphonate ABC transporter, phosphonate-binding protein [KO:K02044 ]
VAPA_1c08880 gltI1; putative glutamate/aspartate ABC transporter, glutamate/aspartate-binding protein GltI [KO:K10001 ]
VAPA_1c22450 gltI2; putative glutamate/aspartate ABC transporter, glutamate/aspartate-binding protein GltI [KO:K10001 ]
VAPA_1c08900 gltK1; putative glutamate/aspartate ABC transporter, permease protein GltK [KO:K10002 ]
VAPA_1c22470 gltK2; putative glutamate/aspartate ABC transporter, permease protein GltK [KO:K10002 ]
VAPA_1c08890 gltJ1; putative glutamate/aspartate ABC transporter, permease protein GltJ [KO:K10003 ]
VAPA_1c22460 gltJ2; putative glutamate/aspartate ABC transporter, permease protein GltJ [KO:K10003 ]
VAPA_1c00890 putative high-affinity branched-chain amino acid ABC transporter, branch-chain amino acid-binding protein [KO:K01999 ]
VAPA_1c02180 putative high-affinity branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_1c08530 high-affinity branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_1c16760 putative amino acid/amide ABC transporter, amino acid/amide-binding protein [KO:K01999 ]
VAPA_1c01460 putative branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_1c01710 putative high-affinity branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_1c04440 putative high-affinity branched-chain amino acid ABC transporter,branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_1c18340 putative ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_2c00630 putative branched-chain amino acid ABC transporter, substrate-binding protein [KO:K01999 ]
VAPA_2c07030 putative branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_1c35930 putative ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_2c12350 putative ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_1c26220 putative ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_1c26230 putative ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_2c10440 putative ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_2c03670 putative branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_1c49610 putative ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_1c51170 putative ABC transporter, branched-chain amino acid-binding protein [KO:K01999 ]
VAPA_1c00880 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_1c19300 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_1c04290 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_1c12950 high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_1c08540 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_1c01700 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_1c04430 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_1c13550 high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_2c00620 putative branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_2c07020 putative branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_1c35920 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_2c10410 putative branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_1c51220 putative branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_2c03660 putative branched-chain amino acid ABC transporter, permease protein [KO:K01997 ]
VAPA_1c08550 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_1c00870 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_1c01690 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_1c19290 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_1c04300 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_1c04420 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_1c13560 high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_2c00610 putative branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_2c10400 putative branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_1c26250 putative branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_1c51210 putative branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_2c03650 putative branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_1c35910 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K01998 ]
VAPA_1c00860 putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_1c02200 putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_1c19310 putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_1c08560 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_1c01680 putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_1c04310 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_1c04410 putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_1c13570 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_1c18370 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_2c00600 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_1c35950 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_1c26260 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_2c10430 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_1c51200 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_2c03640 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01995 ]
VAPA_1c08570 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_1c00850 putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_1c01670 putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_1c02210 putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_1c18380 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_1c19270 livF; putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF [KO:K01996 ]
VAPA_1c04320 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_1c04400 putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_1c12930 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_1c13580 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_2c00590 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_2c10420 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_1c26280 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_1c51190 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_2c03630 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_1c35940 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996 ]
VAPA_1c01560 putative high-affinity branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein [KO:K11959 ]
VAPA_2c11370 putative ABC transporter, branched-chain amino acid-binding protein [KO:K11959 ]
VAPA_2c12220 putative ABC transporter, branched-chain amino acid-binding protein [KO:K11959 ]
VAPA_1c01550 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K11960 ]
VAPA_2c00260 putative branched-chain amino acid ABC transporter, permease protein [KO:K11960 ]
VAPA_1c01540 putative high-affinity branched-chain amino acid ABC transporter, permease protein [KO:K11961 ]
VAPA_2c00270 putative branched-chain amino acid ABC transporter, permease protein [KO:K11961 ]
VAPA_1c01530 putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K11962 ]
VAPA_2c00280 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K11962 ]
VAPA_2c11400 putative branched-chain amino acid transporter, ATP-binding protein [KO:K11962 ]
VAPA_1c01520 putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein [KO:K11963 ]
VAPA_2c00290 putative branched-chain amino acid ABC transporter, ATP-binding protein [KO:K11963 ]
VAPA_1c12710 lolD1; lipoprotein-releasing system, ATP-binding protein LolD [KO:K09810 ] [EC:7.6.2.-]
VAPA_2c03900 putative lipoprotein-releasing system, ATP-binding protein [KO:K09810 ] [EC:7.6.2.-]
Compound
C00093 sn-Glycerol 3-phosphate
C01153 Orthophosphoric monoester
C01181 4-Trimethylammoniobutanoate
C01279 4-Amino-5-hydroxymethyl-2-methylpyrimidine
C03557 2-Aminoethylphosphonate
C03611 Galactose oligosaccharide
C03619 Methyl beta-D-galactoside
C04114 (E)-4-(Trimethylammonio)but-2-enoate
C06705 Capsular polysaccharide
C19872 N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570 alpha-1,5-L-Arabinobiose
C20571 alpha-1,5-L-Arabinotriose
C20572 alpha-1,5-L-Arabinotetraose
Reference
Authors
Tomii K, Kanehisa M.
Title
A comparative analysis of ABC transporters in complete microbial genomes.
Journal
Reference
Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
Journal
Reference
Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
Journal
Reference
Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
Journal
Reference
Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
Journal
Reference
Authors
Richard-Fogal CL, Frawley ER, Kranz RG
Title
Topology and function of CcmD in cytochrome c maturation.
Journal
Reference
Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
Journal
Reference
Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
Journal
Reference
Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
Journal
Reference
Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
Journal
KO pathway
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