Entry
Name
Rap1 signaling pathway - Phocoena sinus (vaquita)
Description
Rap1 is a small GTPase that controls diverse processes, such as cell adhesion, cell-cell junction formation and cell polarity. Like all G proteins, Rap1 cycles between an inactive GDP-bound and an active GTP-bound conformation. A variety of extracellular signals control this cycle through the regulation of several unique guanine nucleotide exchange factors (GEFs) and GTPase activating proteins (GAPs). Rap1 plays a dominant role in the control of cell-cell and cell-matrix interactions by regulating the function of integrins and other adhesion molecules in various cell types. Rap1 also regulates MAP kinase (MAPK) activity in a manner highly dependent on the context of cell types.
Class
Environmental Information Processing; Signal transduction
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Phocoena sinus (vaquita) [GN:
psiu ]
Gene
116759780 RAPGEF5; rap guanine nucleotide exchange factor 5 isoform X1 [KO:K08019 ]
116759546 DOCK4; LOW QUALITY PROTEIN: dedicator of cytokinesis protein 4 [KO:K17697 ]
116755534 GRIN1; glutamate receptor ionotropic, NMDA 1 isoform X1 [KO:K05208 ]
116740277 GRIN2A; glutamate receptor ionotropic, NMDA 2A isoform X1 [KO:K05209 ]
116748386 CALML4; LOW QUALITY PROTEIN: calmodulin-like protein 4 [KO:K02183 ]
116740988 GNAS; guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas isoform X1 [KO:K04632 ]
116761070 RAPGEF3; rap guanine nucleotide exchange factor 3 isoform X1 [KO:K08014 ]
116757044 RAPGEF4; LOW QUALITY PROTEIN: rap guanine nucleotide exchange factor 4 [KO:K04351 ]
116755414 GNAQ; guanine nucleotide-binding protein G(q) subunit alpha [KO:K04634 ]
116749106 PLCB2; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2 isoform X1 [KO:K05858 ] [EC:3.1.4.11 ]
116740640 PLCB1; LOW QUALITY PROTEIN: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 [KO:K05858 ] [EC:3.1.4.11 ]
116753904 FGF2; LOW QUALITY PROTEIN: fibroblast growth factor 2 [KO:K18497 ]
116750545 FGF22; LOW QUALITY PROTEIN: fibroblast growth factor 22 [KO:K04358 ]
116760902 IGF1; LOW QUALITY PROTEIN: insulin-like growth factor I [KO:K05459 ]
116740378 PDGFA; platelet-derived growth factor subunit A isoform X1 [KO:K04359 ]
116761017 PDGFB; platelet-derived growth factor subunit B isoform X1 [KO:K17386 ]
116756768 CSF1; macrophage colony-stimulating factor 1 isoform X1 [KO:K05453 ]
116758090 VEGFB; vascular endothelial growth factor B isoform X1 [KO:K16858 ]
116745757 NGFR; tumor necrosis factor receptor superfamily member 16 [KO:K02583 ]
116755221 RAPGEF1; rap guanine nucleotide exchange factor 1 isoform X1 [KO:K06277 ]
116744074 BCAR1; breast cancer anti-estrogen resistance protein 1 isoform X1 [KO:K05726 ]
116762017 MAGI1; membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 isoform X1 [KO:K05631 ]
116759043 MAGI2; membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2 [KO:K05629 ]
116749377 MAGI3; membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 isoform X1 [KO:K06112 ]
116753860 RAPGEF2; LOW QUALITY PROTEIN: rap guanine nucleotide exchange factor 2 [KO:K08018 ]
116750892 RAPGEF6; rap guanine nucleotide exchange factor 6 isoform X1 [KO:K08020 ]
116740145 LAT; linker for activation of T-cells family member 1 isoform X1 [KO:K07362 ]
116740089 PLCG1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 isoform X1 [KO:K01116 ] [EC:3.1.4.11 ]
116761812 GNAI2; guanine nucleotide-binding protein G(i) subunit alpha-2 isoform X1 [KO:K04630 ]
116749946 GNAI3; guanine nucleotide-binding protein G(i) subunit alpha [KO:K04630 ]
116759318 GNAI1; guanine nucleotide-binding protein G(i) subunit alpha-1 [KO:K04630 ]
116744142 guanine nucleotide-binding protein G(o) subunit alpha [KO:K04534 ]
116748429 SIPA1L1; signal-induced proliferation-associated 1-like protein 1 isoform X1 [KO:K17701 ]
116757937 SIPA1; signal-induced proliferation-associated protein 1 isoform X1 [KO:K08013 ]
116741979 SIPA1L2; signal-induced proliferation-associated 1-like protein 2 isoform X1 [KO:K17702 ]
116743691 SIPA1L3; LOW QUALITY PROTEIN: signal-induced proliferation-associated 1-like protein 3 [KO:K17703 ]
116755498 RALGDS; ral guanine nucleotide dissociation stimulator isoform X1 [KO:K08732 ]
116761737 LOW QUALITY PROTEIN: ras-related C3 botulinum toxin substrate 1-like [KO:K04392 ]
116760236 RAC2; ras-related C3 botulinum toxin substrate 2 isoform X1 [KO:K07860 ]
116745822 RAC3; ras-related C3 botulinum toxin substrate 3 isoform X1 [KO:K07861 ]
116749595 APBB1IP; amyloid beta A4 precursor protein-binding family B member 1-interacting protein isoform X1 [KO:K17704 ]
116743554 VASP; vasodilator-stimulated phosphoprotein isoform X1 [KO:K06274 ]
116751544 ARAP3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12490 ]
116757172 FARP2; FERM, ARHGEF and pleckstrin domain-containing protein 2 isoform X1 [KO:K06082 ]
116755111 VAV2; guanine nucleotide exchange factor VAV2 isoform X1 [KO:K05730 ]
116753482 TIAM1; T-lymphoma invasion and metastasis-inducing protein 1 isoform X1 [KO:K05731 ]
116744257 LOW QUALITY PROTEIN: partitioning defective 6 homolog beta-like [KO:K06093 ]
116744548 PARD6A; partitioning defective 6 homolog alpha isoform X1 [KO:K06093 ]
116751607 RGS14; regulator of G-protein signaling 14 isoform X1 [KO:K17706 ]
116749631 RASSF5; ras association domain-containing protein 5 isoform X1 [KO:K08015 ]
116747589 MAP2K1; LOW QUALITY PROTEIN: dual specificity mitogen-activated protein kinase kinase 1 [KO:K04368 ] [EC:2.7.12.2 ]
116752953 PIK3CB; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform isoform X1 [KO:K00922 ] [EC:2.7.1.153 ]
116752990 PIK3CA; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922 ] [EC:2.7.1.153 ]
116751286 PIK3CD; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform isoform X1 [KO:K00922 ] [EC:2.7.1.153 ]
116750604 PIK3R1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649 ]
116742613 phosphatidylinositol 3-kinase regulatory subunit gamma [KO:K02649 ]
116751944 PIK3R2; phosphatidylinositol 3-kinase regulatory subunit beta [KO:K02649 ]
116741248 PLCE1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 isoform X1 [KO:K05860 ] [EC:3.1.4.11 ]
Compound
Reference
Authors
Kooistra MR, Dube N, Bos JL
Title
Rap1: a key regulator in cell-cell junction formation.
Journal
Reference
Authors
Bos JL, de Rooij J, Reedquist KA
Title
Rap1 signalling: adhering to new models.
Journal
Reference
Authors
Minato N, Kometani K, Hattori M
Title
Regulation of immune responses and hematopoiesis by the Rap1 signal.
Journal
Reference
Authors
Bos JL
Title
Linking Rap to cell adhesion.
Journal
Reference
Authors
Caron E
Title
Cellular functions of the Rap1 GTP-binding protein: a pattern emerges.
Journal
Reference
Authors
Zwartkruis FJ, Bos JL
Title
Ras and Rap1: two highly related small GTPases with distinct function.
Journal
Reference
Authors
Hattori M, Minato N
Title
Rap1 GTPase: functions, regulation, and malignancy.
Journal
Reference
Authors
Pannekoek WJ, Kooistra MR, Zwartkruis FJ, Bos JL
Title
Cell-cell junction formation: the role of Rap1 and Rap1 guanine nucleotide exchange factors.
Journal
Reference
Authors
Boettner B, Van Aelst L
Title
Control of cell adhesion dynamics by Rap1 signaling.
Journal
Reference
Authors
Xia Z, Storm DR.
Title
The role of calmodulin as a signal integrator for synaptic plasticity.
Journal
Reference
Authors
Mor A, Dustin ML, Philips MR
Title
Small GTPases and LFA-1 reciprocally modulate adhesion and signaling.
Journal
Reference
Authors
Burbach BJ, Medeiros RB, Mueller KL, Shimizu Y
Title
T-cell receptor signaling to integrins.
Journal
Reference
Authors
Stork PJ
Title
Does Rap1 deserve a bad Rap?
Journal
Reference
Authors
Banihashemi B, Albert PR
Title
Dopamine-D2S receptor inhibition of calcium influx, adenylyl cyclase, and mitogen-activated protein kinase in pituitary cells: distinct Galpha and Gbetagamma requirements.
Journal
Reference
Authors
Banno A, Ginsberg MH
Title
Integrin activation.
Journal
Reference
Authors
Doebele RC, Schulze-Hoepfner FT, Hong J, Chlenski A, Zeitlin BD, Goel K, Gomes S, Liu Y, Abe MK, Nor JE, Lingen MW, Rosner MR
Title
A novel interplay between Epac/Rap1 and mitogen-activated protein kinase kinase 5/extracellular signal-regulated kinase 5 (MEK5/ERK5) regulates thrombospondin to control angiogenesis.
Journal
Reference
Authors
Breckler M, Berthouze M, Laurent AC, Crozatier B, Morel E, Lezoualc'h F
Title
Rap-linked cAMP signaling Epac proteins: compartmentation, functioning and disease implications.
Journal
Related pathway
KO pathway
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