SSDB Best Search Result

Entry:bur:Bcep18194_A3440 (1414 a.a.)
Name:DNA-directed RNA polymerase subunit beta'
KO:K03046 DNA-directed RNA polymerase subunit beta'

Search Result : 211 hits (reference genome only)

                 Entry                                       KO      len   SW-score  identity  overlap  
------------------------------------------------------------------ -------------------------------------
bps:BPSL3220 DNA-directed RNA polymerase beta' chain    K03046    1412     8873     0.974      1412    
bma:BMA2640 DNA-directed RNA polymerase, beta subunit   K03046    1412     8864     0.973      1412    
bxe:Bxe_A0307 DNA-directed RNA polymerase subunit beta' K03046    1412     8807     0.967      1410    
rso:RSc3033 probable dna-directed rna polymerase (beta' K03046    1409     7995     0.874      1407    
reh:H16_A3496 DNA-directed RNA polymerase beta prime su K03046    1415     7980     0.875      1404    
bpe:BP0016 DNA-directed RNA polymerase beta' chain      K03046    1414     7541     0.821      1421    
eba:ebA3819 DNA-directed RNA polymerase, beta' chain    K03046    1409     7265     0.799      1411    
nme:NMB0133 DNA-directed RNA polymerase, beta' subunit  K03046    1391     6924     0.764      1378    
ngo:NGO_1850 DNA-directed RNA polymerase subunit beta'  K03046    1391     6919     0.763      1378    
ppu:PP_0448 DNA-directed RNA polymerase subunit beta'   K03046    1399     6261     0.681      1384    
pae:PA4269 DNA-directed RNA polymerase subunit beta'    K03046    1399     6250     0.676      1395    
avn:Avin_06180 DNA-directed RNA polymerase, beta' subun K03046    1399     6239     0.680      1394    
son:SO_0225 DNA-directed RNA polymerase beta' subunit R K03046    1405     6206     0.672      1397    
pst:PSPTO_0620 DNA-directed RNA polymerase, beta' subun K03046    1399     6194     0.677      1384    
psb:Psyr_4554 DNA-directed RNA polymerase subunit beta' K03046    1399     6191     0.676      1384    
lpn:lpg0323 DNA-directed RNA polymerase beta' subunit   K03046    1415     6159     0.667      1380    
mca:MCA1067 DNA-directed RNA polymerase, beta' subunit  K03046    1400     6155     0.670      1401    
xcc:XCC0889 RNA polymerase beta' subunit                K03046    1405     6148     0.670      1386    
xac:XAC0966 RNA polymerase beta' subunit                K03046    1404     6137     0.670      1386    
xom:XOO3393 RNA polymerase beta' subunit                K03046    1405     6127     0.667      1386    
xfa:XF_2632 RNA polymerase beta' subunit                K03046    1430     6113     0.674      1378    
hdu:HD_1876 RNA polymerase beta' subunit                K03046    1420     6109     0.661      1396    
yen:YE0287 DNA-directed RNA polymerase beta' chain      K03046    1406     6106     0.661      1397    
yps:YPTB0284 DNA-directed RNA polymerase beta chain     K03046    1406     6104     0.661      1397    
ype:YPO3746 DNA-directed RNA polymerase beta' chain     K03046    1406     6104     0.661      1397    
vvu:VV1_1212 DNA-directed RNA polymerase, beta' subunit K03046    1400     6100     0.665      1384    
ypk:y0485 RNA polymerase, beta prime subunit            K03046    1418     6098     0.660      1397    
ddd:Dda3937_00221 RNA polymerase, beta prime subunit    K03046    1407     6097     0.660      1396    
vch:VC_0329 DNA-directed RNA polymerase, beta' subunit  K03046    1401     6089     0.660      1396    
vpa:VP2921 DNA-directed RNA polymerase, beta' subunit   K03046    1400     6088     0.661      1396    
smar:SM39_4229 RNA polymerase, beta prime subunit       K03046    1407     6082     0.658      1397    
apl:APL_1728 DNA-directed RNA polymerase beta' chain    K03046    1412     6075     0.655      1404    
sfl:SF4061 DNA-directed RNA polymerase subunit beta'    K03046    1407     6075     0.660      1396    
ecs:ECs_4911 RNA polymerase beta prime subunit          K03046    1407     6075     0.660      1396    
eco:b3988 RNA polymerase subunit beta'                  K03046    1407     6075     0.660      1396    
ecj:JW3951 RNA polymerase, beta prime subunit           K03046    1407     6075     0.660      1396    
ece:Z5561 RNA polymerase, beta prime subunit            K03046    1407     6075     0.660      1396    
seo:STM14_4991 DNA-directed RNA polymerase subunit beta K03046    1407     6071     0.659      1396    
sty:STY3731 DNA-directed RNA polymerase, beta'-subunit  K03046    1407     6071     0.659      1396    
stm:STM4154 RNA polymerase, beta prime subunit          K03046    1407     6071     0.659      1396    
cro:ROD_37641 DNA-directed RNA polymerase, beta'-subuni K03046    1407     6068     0.660      1396    
kpn:KPN_04366 DNA-directed RNA polymerase beta' subunit K03046    1407     6064     0.660      1396    
eam:EAMY_0240 DNA-directed RNA polymerase beta' chain   K03046    1407     6060     0.658      1396    
enc:ECL_00246 DNA-directed RNA polymerase subunit beta' K03046    1407     6059     0.658      1396    
vfi:VF_2412 RNA polymerase, beta prime subunit          K03046    1401     6057     0.654      1397    
eca:ECA0224 DNA-directed RNA polymerase beta' subunit   K03046    1407     6057     0.654      1397    
pmu:PM1736 RpoC                                         K03046    1417     6053     0.659      1395    
buc:BU033 DNA-directed RNA polymerase beta' chain       K03046    1407     6019     0.654      1400    
hin:HI_0514 DNA-directed RNA polymerase, beta' chain (r K03046    1415     6014     0.663      1383    
aci:ACIAD0308 DNA-directed RNA polymerase beta' chain ( K03046    1413     5987     0.648      1391    
acb:A1S_0288 DNA-directed RNA polymerase beta' chain    K03046    1397     5975     0.647      1391    
gsu:GSU2862 DNA-directed RNA polymerase, beta-prime sub K03046    1395     5644     0.615      1391    
rru:Rru_A2694 DNA-directed RNA polymerase               K03046    1393     5559     0.602      1417    
ftu:FTT_0145 DNA-directed RNA polymerase, beta subunit  K03046    1417     5524     0.606      1382    
ccr:CC_0503 DNA-directed RNA polymerase, beta' subunit  K03046    1396     5442     0.596      1413    
rsp:RSP_1712 DNA-directed RNA polymerase beta' subunit  K03046    1415     5419     0.592      1402    
mlo:mlr0277 RNA polymerase beta subunit                 K03046    1398     5415     0.598      1392    
rpa:TX73_016890 DNA-directed RNA polymerase subunit bet K03046    1400     5400     0.589      1423    
atu:Atu1955 DNA-directed RNA polymerase beta' chain     K03046    1402     5382     0.585      1422    
bms:BR1242 DNA-directed RNA polymerase, beta' subunit   K03046    1400     5373     0.586      1395    
bme:BMEI0750 DNA-directed RNA polymerase beta' chain    K03046    1400     5373     0.586      1395    
pde:Pden_0749 DNA-directed RNA polymerase subunit beta' K03046    1402     5371     0.592      1397    
bmf:BAB1_1263 RNA polymerase, alpha subunit:RNA polymer K03046    1400     5370     0.586      1395    
sme:SMc01316 Probable DNA-directed RNA polymerase beta' K03046    1401     5361     0.583      1418    
ret:RHE_CH01668 DNA-directed RNA polymerase beta` chain K03046    1402     5349     0.581      1418    
rle:RL1767 DNA-directed RNA polymerase beta' chain      K03046    1402     5346     0.580      1418    
bja:bll5409 DNA-directed RNA polymerase beta' chain     K03046    1398     5325     0.582      1420    
dvu:DVU_2929 DNA-directed RNA polymerase, beta prime su K03046    1385     5278     0.577      1372    
rpr:RP141 DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN  K03046    1372     5242     0.568      1388    
rco:RC0182 DNA-directed RNA polymerase beta prime chain K03046    1372     5242     0.568      1388    
wol:WD_0024 DNA-directed RNA polymerase, beta/beta' sub K13797    2837     4815     0.534      1388    
cpn:CPn_0082 RNA Polymerase Beta'                       K03046    1393     4452     0.504      1410    
lil:LA_3419 DNA-directed RNA polymerase subunit beta'   K03046    1404     4434     0.507      1437    
ctb:CTL0566 DNA-directed RNA polymerase beta-prime chai K03046    1396     4424     0.501      1412    
ctr:CT_314 DNA-directed RNA polymerase subunit beta'    K03046    1396     4424     0.501      1412    
hpj:jhp_1121 DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT  K13797    2890     4410     0.478      1550    
hpy:HP_1198 DNA-directed RNA polymerase, beta subunit ( K13797    2890     4403     0.478      1550    
bfr:BF4191 DNA-directed RNA polymerase beta' chain      K03046    1427     4396     0.487      1444    
bbu:BB_0388 DNA-directed RNA polymerase, beta' subunit  K03046    1377     4391     0.495      1420    
tpa:TP_0242 DNA-directed RNA polymerase, beta' subunit  K03046    1416     4387     0.498      1419    
bth:BT_2733 DNA-directed RNA polymerase beta' chain     K03046    1427     4365     0.485      1444    
cje:Cj0479 DNA-directed RNA polymerase subunit beta'    K03046    1517     4359     0.478      1543    
aae:aq_1945 RNA polymerase beta prime subunit           K03046    1574     4330     0.483      1571    
tde:TDE_2420 DNA-directed RNA polymerase, beta' subunit K03046    1424     4329     0.493      1423    
hth:HTH_0857 DNA-directed RNA polymerase beta' subunit  K03046    1566     4297     0.467      1578    
fps:FP1175 DNA-directed RNA polymerase beta' subunit Rp K03046    1438     4273     0.477      1459    
fnu:FN2035 DNA-directed RNA polymerase beta' chain      K03046    1319     4201     0.488      1370    
cte:CT0156 DNA-directed RNA polymerase, beta-prime subu K03046    1490     4126     0.466      1505    
mta:Moth_2467 DNA-directed RNA polymerase subunit beta' K03046    1164     4073     0.484      1384    
cdf:CD630_00670 DNA-directed RNA polymerase subunit bet K03046    1161     3997     0.493      1363    
cbo:CBO3487 DNA-directed RNA polymerase beta' chain     K03046    1178     3988     0.472      1384    
cac:CA_C3142 DNA-dependent RNA polymerase beta' subunit K03046    1182     3966     0.472      1369    
cpe:CPE2412 RNA polymerase beta' subunit                K03046    1178     3954     0.472      1390    
bce:BC0123 DNA-directed RNA polymerase beta' chain      K03046    1203     3935     0.476      1398    
btk:BT9727_0099 DNA-directed RNA polymerase, beta' subu K03046    1203     3933     0.476      1398    
bsu:BSU01080 DNA-directed RNA polymerase subunit beta'  K03046    1199     3933     0.470      1408    
ban:BA_0103 DNA-directed RNA polymerase, beta' subunit  K03046    1203     3931     0.476      1398    
efa:EF3237 DNA-directed RNA polymerase, beta-prime subu K03046    1217     3857     0.462      1398    
lin:rpoC RNA polymerase (beta' subunit)                 K03046    1201     3854     0.460      1393    
lmo:lmo0259 DNA-directed RNA polymerase subunit beta'   K03046    1201     3847     0.459      1393    
sau:SA0501 RNA polymerase beta-prime chain              K03046    1207     3826     0.459      1402    
sao:SAOUHSC_00525 DNA-directed RNA polymerase subunit b K03046    1198     3821     0.459      1399    
ser:SERP0184 DNA-directed RNA polymerase, beta' subunit K03046    1207     3813     0.460      1390    
lcb:LCABL_26800 DNA-directed RNA polymerase subunit bet K03046    1220     3740     0.442      1394    
lpl:lp_1022 DNA-directed RNA polymerase, beta' subunit  K03046    1213     3717     0.440      1397    
smu:SMU_1989 DNA-dependent RNA polymerase, beta' subuni K03046    1218     3717     0.452      1390    
spn:SP_1960 DNA-directed RNA polymerase, beta' subunit  K03046    1225     3703     0.447      1410    
spy:SPy_0099 DNA-dependent RNA polymerase, B' subunit   K03046    1213     3701     0.446      1414    
spr:spr1776 DNA-dependent RNA polymerase                K03046    1225     3700     0.447      1410    
lla:L0138 DNA-directed RNA polymerase beta' chain       K03046    1198     3612     0.448      1383    
llm:llmg_1981 DNA-directed RNA polymerase, beta' subuni K03046    1207     3606     0.447      1386    
ljo:LJ_0333 DNA-directed RNA polymerase beta' chain     K03046    1224     3603     0.438      1396    
cau:Caur_0873 DNA-directed RNA polymerase, beta' subuni K03046    1503     3533     0.424      1614    
sma:SAVERM_4915 RNA polymerase beta prime subunit       K03046    1299     3514     0.435      1491    
mab:MAB_3868c DNA-directed RNA polymerase beta' chain   K03046    1319     3509     0.430      1516    
sgr:SGR_2868 RNA polymerase beta prime subunit          K03046    1299     3508     0.434      1492    
ksk:KSE_31990 putative DNA-directed RNA polymerase subu K03046    1297     3499     0.429      1495    
amd:AMED_0657 DNA-directed RNA polymerase subunit beta' K03046    1303     3498     0.430      1487    
mtu:Rv0668 DNA-directed RNA polymerase subunit beta'    K03046    1316     3498     0.435      1498    
mtc:MT0696 DNA-directed RNA polymerase, beta-prime subu K03046    1316     3498     0.435      1498    
sgu:SGLAU_20040 DNA-directed RNA polymerase subunit bet K03046    1299     3496     0.434      1492    
msm:MSMEG_1368 DNA-directed RNA polymerase, beta' subun K03046    1317     3477     0.427      1509    
mle:ML1890 [beta]' subunit of RNA polymerase            K03046    1316     3477     0.429      1497    
sct:SCAT_3567 RNA polymerase (beta' subunit)            K03046    1299     3466     0.427      1492    
sco:SCO4655 DNA-directed RNA polymerase beta' chain (fr K03046    1299     3466     0.427      1491    
rha:RHA1_ro01961 DNA-directed RNA polymerase beta' subu K03046    1318     3450     0.429      1481    
blo:BL1204 RpoC                                         K03046    1345     3392     0.421      1482    
cdi:DIP0447 DNA-directed RNA polymerase beta' chain     K03046    1336     3347     0.419      1517    
cgl:Cgl0489 DNA-directed RNA polymerase beta' subunit/1 K03046    1333     3260     0.411      1519    
tth:TT_C1460 DNA-directed RNA polymerase beta' chain    K03046    1513     2995     0.372      1721    
dra:DR_0911 DNA-directed RNA polymerase, beta` subunit  K03046    1546     2827     0.364      1718    
mge:MG_340 DNA-directed RNA polymerase, beta' subunit   K03046    1292     2709     0.366      1466    
mpn:MPN_515 DNA-directed RNA polymerase beta' chain     K03046    1290     2677     0.364      1474    
tma:TM0459 DNA-directed RNA polymerase, beta' subunit   K03046    1690     2359     0.327      1812    
ana:alr1595 RNA polymerase gamma subunit                K03046     625     2319     0.603      572     
npu:Npun_F4986 DNA-directed RNA polymerase, gamma subun K03046     625     2318     0.600      572     
syf:Synpcc7942_1523 DNA-directed RNA polymerase         K03046     624     2313     0.602      570     
syc:syc2508_d RNA polymerase gamma-subunit              K03046     624     2302     0.600      570     
gvi:glr4277 ORF_ID:glr4277                              K03046     608     2298     0.582      605     
tel:tll0641 RNA polymerase gamma-subunit                K03046     622     2295     0.589      581     
syn:slr1265 RNA polymerase gamma-subunit                K03046     626     2290     0.589      584     
pma:Pro_1639 DNA-directed RNA polymerase beta' subunit/ K03046     634     2223     0.578      585     
mdm:71430804 RNA polymerase beta' subunit               K03046     680     1614     0.453      580     
mtr:120580069 DNA-directed RNA polymerase subunit beta' K03046     686     1613     0.474      538     
sly:3950486 RNA polymerase beta subunit                 K03046     688     1610     0.454      581     
cit:4271234 RNA polymerase beta' subunit                K03046     680     1603     0.458      550     
vvi:4025098 RNA polymerase beta' subunit                K03046     682     1601     0.457      580     
ath:ArthCp013 RNA polymerase beta' subunit              K03046     680     1597     0.446      579     
gmx:3989292 RNA polymerase beta' subunit                K03046     687     1592     0.460      552     
csv:3429303 RNA polymerase beta' subunit                K03046     680     1591     0.460      550     
rcu:11542294 RNA polymerase beta' subunit               K03046     654     1585     0.463      547     
vg:77947708 Rhizobium phage RHph_Y65; DNA-directed RNA            1127     1570     0.303      1086    
tps:THAPSDRAFT_bd997 hypothetical protein                          696     1559     0.426      657     
zma:845226 RNA polymerase beta' subunit                 K03046     683     1547     0.452      551     
osa:3131433 RNA polymerase beta' subunit                K03046     682     1541     0.452      551     
cre:ChreCp069 chloroplast RNA polymerase beta' chain    K03046     489     1032     0.517      325     
nmr:Nmar_0348 DNA-directed RNA polymerase subunit A'    K03041    1263      931     0.269      1017    
tko:TK1082 DNA-directed RNA polymerase, subunit A'      K03041     906      893     0.277      881     
pfu:PF1563 DNA-directed RNA polymerase subunit a'       K03041     907      889     0.285      895     
afu:AF_1888 DNA-directed RNA polymerase, subunit A' (rp K03041     867      870     0.278      892     
sai:Saci_0692 DNA-directed RNA polymerase subunit A'    K03041     880      867     0.270      914     
ani:ANIA_00809 DNA-directed RNA polymerase II core subu K03006    1745      848     0.236      1557    
pfa:C2H85_pgp06 RNA polymerase beta subunit, putative              575      846     0.288      542     
aor:AO090003000491 unnamed protein product; RNA polymer K03006    1748      836     0.232      1528    
mmp:MMP1363 RNA polymerase, alpha subunit               K03041     889      834     0.266      882     
sso:SSO0225 DNA-directed RNA polymerase, subunit A' (rp K03041     880      832     0.279      873     
fgr:FGSG_00916 DNA-directed RNA polymerase II largest s K03006    1758      830     0.239      1564    
afm:AFUA_1G14680 DNA-dependent RNA polymerase II larges K03006    1750      826     0.233      1529    
cal:CAALFM_CR10680WA DNA-directed RNA polymerase II cor K03006    1728      825     0.230      1542    
pai:PAE0666 DNA-directed RNA polymerase subunit A' (rpo K03041     884      810     0.256      891     
mth:MTH_1051 DNA-dependent RNA polymerase, subunit A'   K03041     870      804     0.271      871     
sce:YDL140C DNA-directed RNA polymerase II core subunit K03006    1733      788     0.230      1495    
kla:KLLA0_F05071g uncharacterized protein               K03006    1720      781     0.220      1494    
ape:APE_1853.1 DNA-directed RNA polymerase subunit A    K03041     891      781     0.280      901     
ncr:NCU02103 DNA-directed RNA polymerase II largest sub K03006    1761      779     0.231      1535    
mba:Mbar_A3692 DNA-directed RNA polymerase, subunit A'  K03041     880      778     0.267      878     
tca:656547 DNA-directed RNA polymerase III subunit RPC1 K03018    1390      777     0.252      1469    
tac:Ta0391 probable DNA-directed RNA polymerase, chain  K03041     885      775     0.259      902     
hal:VNG_2664G DNA-directed RNA polymerase subunit A     K03041     926      775     0.283      808     
hma:rrnAC2428 DNA-directed RNA polymerase subunit A     K03041     969      769     0.267      806     
aga:1278148 DNA-directed RNA polymerase II subunit RPB1 K03006    1877      761     0.236      1624    
pti:PHATRDRAFT_15555 hypothetical protein               K03006    1706      758     0.236      1425    
spo:2540292 DNA-directed RNA polymerase II complex larg K03006    1752      755     0.224      1506    
aag:23687783 DNA-directed RNA polymerase II subunit RPB K03006    1887      747     0.238      1627    
ddi:DDB_G0279193 RNA polymerase II core subunit         K03006    1727      742     0.231      1510    
ame:725552 DNA-directed RNA polymerase III subunit RPC1 K03018    2011      740     0.239      1492    
ola:101160848 DNA-directed RNA polymerase II subunit RP K03006    1966      738     0.228      1573    
mdo:100014728 RNA polymerase II subunit A               K03006    1970      732     0.224      1520    
xtr:116409862 DNA-directed RNA polymerase II subunit RP K03006    1968      731     0.222      1511    
ocu:100344349 DNA-directed RNA polymerase II subunit RP K03006    1970      730     0.226      1529    
cfa:479483 DNA-directed RNA polymerase II subunit RPB1  K03006    1970      730     0.226      1529    
rno:363633 DNA-directed RNA polymerase II subunit RPB1  K03006    1970      730     0.226      1529    
hsa:5430 RNA polymerase II subunit A                    K03006    1970      729     0.226      1529    
ecb:100072997 DNA-directed RNA polymerase II subunit RP K03006    1970      729     0.226      1529    
bta:282312 DNA-directed RNA polymerase II subunit RPB1  K03006    1970      729     0.226      1529    
mmu:20020 polymerase (RNA) II (DNA directed) polypeptid K03006    1970      729     0.226      1529    
mcc:721865 DNA-directed RNA polymerase II subunit RPB1  K03006    1970      728     0.224      1526    
fca:101098500 DNA-directed RNA polymerase II subunit RP K03006    1970      727     0.226      1529    
ssc:100737040 LOW QUALITY PROTEIN: DNA-directed RNA pol K03006    1970      724     0.224      1520    
dre:553347 DNA-directed RNA polymerase II subunit RPB1  K03006    1965      723     0.225      1621    
hvo:HVO_0349 DNA-directed RNA polymerase subunit A'     K03041     976      722     0.270      748     
xla:108703583 DNA-directed RNA polymerase II subunit RP K03006    1968      721     0.221      1520    
dme:Dmel_CG1554 RNA polymerase II subunit A             K03006    1887      712     0.230      1627    
mgr:MGG_04652 DNA-directed RNA polymerase II largest su K03006    1757      705     0.227      1567    
cel:CELE_F36A4.7 DNA-directed RNA polymerase II subunit K03006    1856      704     0.230      1518    
cne:CNE03720 DNA-directed RNA polymerase II largest sub K03006    1786      695     0.213      1490    
bmor:101739499 DNA-directed RNA polymerase III subunit  K03018    1392      688     0.245      1463    
gga:423727 DNA-directed RNA polymerase III subunit RPC1 K03018    1390      653     0.241      1456    
tbr:Tb927.4.5020 RNA polymerase IIA largest subunit     K03006    1765      615     0.225      1290    
lma:LMJF_31_2610 RNA polymerase II largest subunit      K03006    1662      575     0.219      1346    
mja:MJ_1042 DNA-directed RNA polymerase, subunit A' (rp K03041    1341      489     0.279      488     

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