PATHWAY: bom05022 Help
Entry
Name
Pathways of neurodegeneration - multiple diseases - Bos mutus (wild yak)
Description
Neurodegeneration is generally defined as progressive, irreversible loss of neurons, which may affect either the peripheral or central nervous system (CNS). Neurodegenerative diseases (NDs) include highly debilitating illnesses, such as Alzheimer (AD), Parkinson disease (PD), amyotrophic lateral sclerosis, Huntington disease, spinocerebellar ataxias, and prion diseases (PrD). The hallmark event, which is thought to be at the root of these diseases, is the progressive accumulation of misfolded protein aggregates. Major basic processes include abnormal protein dynamics due to deficiency of the ubiquitin-proteosome-autophagy system, oxidative stress and free radical formation, endoplasmic reticulum stress, mitochondrial dysfunction and (secondary) disruptions of axonal transport.
Class
Human Diseases; Neurodegenerative disease
BRITE hierarchy
Pathway map
bom05022 Pathways of neurodegeneration - multiple diseases
Ortholog table
Organism
Bos mutus (wild yak) [GN:
bom ]
Gene
102273672 TRPC3; transient receptor potential cation channel subfamily C member 3 [KO:K04966 ]
102276953 GRIN1; glutamate ionotropic receptor NMDA type subunit 1 [KO:K05208 ]
102283831 GRIN2A; glutamate ionotropic receptor NMDA type subunit 2A [KO:K05209 ]
102273574 GRIN2B; glutamate ionotropic receptor NMDA type subunit 2B [KO:K05210 ]
102272710 GRIN2C; glutamate ionotropic receptor NMDA type subunit 2C [KO:K05211 ]
102266852 GRIN2D; glutamate ionotropic receptor NMDA type subunit 2D [KO:K05212 ]
102268808 GRIA1; glutamate ionotropic receptor AMPA type subunit 1 [KO:K05197 ]
102281980 GRIA2; glutamate ionotropic receptor AMPA type subunit 2 [KO:K05198 ]
102274060 GRIA3; glutamate ionotropic receptor AMPA type subunit 3 [KO:K05199 ]
102281705 GRIA4; glutamate ionotropic receptor AMPA type subunit 4 [KO:K05200 ]
102266839 CACNA1B; calcium voltage-gated channel subunit alpha1 B [KO:K04849 ]
102277590 CACNA1C; calcium voltage-gated channel subunit alpha1 C [KO:K04850 ]
102271623 CACNA1D; calcium voltage-gated channel subunit alpha1 D [KO:K04851 ]
102286805 CACNA1F; calcium voltage-gated channel subunit alpha1 F [KO:K04853 ]
102272241 CACNA1S; calcium voltage-gated channel subunit alpha1 S [KO:K04857 ]
102272741 CHRNA7; cholinergic receptor nicotinic alpha 7 subunit [KO:K04809 ]
102268434 UBA52; ubiquitin A-52 residue ribosomal protein fusion product 1 [KO:K02927 ]
102282065 vesicle-associated membrane protein-associated protein B-like [KO:K10707 ]
102270765 EIF2S1; eukaryotic translation initiation factor 2 subunit alpha [KO:K03237 ]
102287341 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1-like [KO:K03945 ]
102286782 NDUFA4L2; NDUFA4, mitochondrial complex associated like 2 [KO:K03948 ]
102278402 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5-like [KO:K03949 ]
102287792 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [KO:K11352 ]
102270846 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 [KO:K03960 ]
102270261 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [KO:K03964 ]
102278005 cytochrome c oxidase subunit 4 isoform 2, mitochondrial [KO:K02263 ]
102273691 cytochrome c oxidase subunit 4 isoform 1, mitochondrial [KO:K02263 ]
106701007 cytochrome c oxidase subunit 4 isoform 1, mitochondrial-like [KO:K02263 ]
102286307 cytochrome c oxidase subunit 7A-related protein, mitochondrial [KO:K02270 ]
102276545 ATP5A1; ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle [KO:K02132 ]
102281283 ATP5B; ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide [KO:K02133 ] [EC:7.1.2.2 ]
102272177 ATP5C1; ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [KO:K02136 ]
102278585 ATP5D; ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit [KO:K02134 ]
106701624 ATP5E; ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit [KO:K02135 ]
102287079 ATP5F1; ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1 [KO:K02127 ]
102272523 ATP5G1; ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) [KO:K02128 ]
102266899 ATP synthase F(0) complex subunit C2, mitochondrial-like [KO:K02128 ]
102284908 ATP5G3; ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) [KO:K02128 ]
102265342 ATP5G2; ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9) [KO:K02128 ]
102283543 ATP5H; ATP synthase, H+ transporting, mitochondrial Fo complex subunit D [KO:K02138 ]
102277102 ATP5O; ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit [KO:K02137 ]
102276478 ATP5J; ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6 [KO:K02131 ]
102274999 TOMM40L; translocase of outer mitochondrial membrane 40 like [KO:K11518 ]
102275725 TOMM40; translocase of outer mitochondrial membrane 40 [KO:K11518 ]
102272271 PPP3R1; protein phosphatase 3 regulatory subunit B, alpha [KO:K06268 ]
102277736 PPP3R2; protein phosphatase 3 regulatory subunit B, beta [KO:K06268 ]
102266010 MAP1LC3A; microtubule associated protein 1 light chain 3 alpha [KO:K10435 ]
102288385 MAP1LC3C; microtubule associated protein 1 light chain 3 gamma [KO:K10435 ]
102274044 SMCR8; Smith-Magenis syndrome chromosome region, candidate 8 [KO:K23611 ]
102285764 WIPI2; WD repeat domain, phosphoinositide interacting 2 [KO:K17908 ]
102277604 WIPI1; WD repeat domain, phosphoinositide interacting 1 [KO:K17908 ]
102274317 ALS2; ALS2, alsin Rho guanine nucleotide exchange factor [KO:K04575 ]
102273253 RAC1; ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) [KO:K04392 ]
102265013 FIG4; FIG4 phosphoinositide 5-phosphatase [KO:K22913 ] [EC:3.1.3.-]
102271664 ACTR1A; ARP1 actin-related protein 1 homolog A, centractin alpha [KO:K16575 ]
102287122 ACTR1B; ARP1 actin-related protein 1 homolog B, centractin beta [KO:K16575 ]
102284508 CDK5R1; cyclin dependent kinase 5 regulatory subunit 1 [KO:K11716 ]
102266016 AGER; advanced glycosylation end-product specific receptor [KO:K19722 ]
Compound
C01245 D-myo-Inositol 1,4,5-trisphosphate
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04599 1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine
C11310 1-Methyl-4-phenylpyridinium
C16514 Amyloid beta protein 40
C16515 Amyloid beta protein 42
C21011 [Protein]-N(epsilon)-(carboxymethyl)lysine
C21012 [Protein]-N(epsilon)-(carboxyethyl)lysine
Reference
Authors
Gan L, Cookson MR, Petrucelli L, La Spada AR
Title
Converging pathways in neurodegeneration, from genetics to mechanisms.
Journal
Reference
Authors
Dugger BN, Dickson DW
Title
Pathology of Neurodegenerative Diseases.
Journal
Reference
Authors
Jellinger KA
Title
Basic mechanisms of neurodegeneration: a critical update.
Journal
Reference
Authors
Jellinger KA
Title
Recent advances in our understanding of neurodegeneration.
Journal
Reference
Authors
Van Bulck M, Sierra-Magro A, Alarcon-Gil J, Perez-Castillo A, Morales-Garcia JA
Title
Novel Approaches for the Treatment of Alzheimer's and Parkinson's Disease.
Journal
Reference
Authors
Ross CA, Poirier MA
Title
Protein aggregation and neurodegenerative disease.
Journal
Reference
Authors
Soto C, Pritzkow S
Title
Protein misfolding, aggregation, and conformational strains in neurodegenerative diseases.
Journal
Reference
Authors
Dantuma NP, Bott LC
Title
The ubiquitin-proteasome system in neurodegenerative diseases: precipitating factor, yet part of the solution.
Journal
Reference
Authors
Zheng C, Geetha T, Babu JR
Title
Failure of ubiquitin proteasome system: risk for neurodegenerative diseases.
Journal
Reference
Authors
Park H, Kang JH, Lee S
Title
Autophagy in Neurodegenerative Diseases: A Hunter for Aggregates.
Journal
Reference
Authors
Malik BR, Maddison DC, Smith GA, Peters OM
Title
Autophagic and endo-lysosomal dysfunction in neurodegenerative disease.
Journal
Reference
Authors
Metaxakis A, Ploumi C, Tavernarakis N
Title
Autophagy in Age-Associated Neurodegeneration.
Journal
Reference
Authors
Vidal RL, Matus S, Bargsted L, Hetz C
Title
Targeting autophagy in neurodegenerative diseases.
Journal
Reference
Authors
Menzies FM, Fleming A, Caricasole A, Bento CF, Andrews SP, Ashkenazi A, Fullgrabe J, Jackson A, Jimenez Sanchez M, Karabiyik C, Licitra F, Lopez Ramirez A, Pavel M, Puri C, Renna M, Ricketts T, Schlotawa L, Vicinanza M, Won H, Zhu Y, Skidmore J, Rubinsztein DC
Title
Autophagy and Neurodegeneration: Pathogenic Mechanisms and Therapeutic Opportunities.
Journal
Reference
Authors
Chu CT
Title
Mechanisms of selective autophagy and mitophagy: Implications for neurodegenerative diseases.
Journal
Reference
Authors
Kim I, Xu W, Reed JC
Title
Cell death and endoplasmic reticulum stress: disease relevance and therapeutic opportunities.
Journal
Reference
Authors
Doyle KM, Kennedy D, Gorman AM, Gupta S, Healy SJ, Samali A
Title
Unfolded proteins and endoplasmic reticulum stress in neurodegenerative disorders.
Journal
Reference
Authors
Halliday M, Hughes D, Mallucci GR
Title
Fine-tuning PERK signaling for neuroprotection.
Journal
Reference
Authors
Rozpedek-Kaminska W, Siwecka N, Wawrzynkiewicz A, Wojtczak R, Pytel D, Diehl JA, Majsterek I
Title
The PERK-Dependent Molecular Mechanisms as a Novel Therapeutic Target for Neurodegenerative Diseases.
Journal
Reference
Authors
Hetz C, Mollereau B
Title
Disturbance of endoplasmic reticulum proteostasis in neurodegenerative diseases.
Journal
Reference
Authors
Bezprozvanny I
Title
Calcium signaling and neurodegenerative diseases.
Journal
Reference
Authors
Ureshino RP, Erustes AG, Bassani TB, Wachilewski P, Guarache GC, Nascimento AC, Costa AJ, Smaili SS, Pereira GJDS
Title
The Interplay between Ca(2+) Signaling Pathways and Neurodegeneration.
Journal
Reference
Authors
Golpich M, Amini E, Mohamed Z, Azman Ali R, Mohamed Ibrahim N, Ahmadiani A
Title
Mitochondrial Dysfunction and Biogenesis in Neurodegenerative diseases: Pathogenesis and Treatment.
Journal
Reference
Authors
Morfini GA, Burns M, Binder LI, Kanaan NM, LaPointe N, Bosco DA, Brown RH Jr, Brown H, Tiwari A, Hayward L, Edgar J, Nave KA, Garberrn J, Atagi Y, Song Y, Pigino G, Brady ST
Title
Axonal transport defects in neurodegenerative diseases.
Journal
Reference
Authors
Gibbs KL, Greensmith L, Schiavo G
Title
Regulation of Axonal Transport by Protein Kinases.
Journal
Reference
Authors
Millecamps S, Julien JP
Title
Axonal transport deficits and neurodegenerative diseases.
Journal
Reference
Authors
Sleigh JN, Rossor AM, Fellows AD, Tosolini AP, Schiavo G
Title
Axonal transport and neurological disease.
Journal
Reference
Authors
Perlson E, Maday S, Fu MM, Moughamian AJ, Holzbaur EL
Title
Retrograde axonal transport: pathways to cell death?
Journal
Related pathway
bom04141 Protein processing in endoplasmic reticulum
bom04933 AGE-RAGE signaling pathway in diabetic complications
KO pathway
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