PATHWAY: oaa05022 Help
Entry
Name
Pathways of neurodegeneration - multiple diseases - Ornithorhynchus anatinus (platypus)
Description
Neurodegeneration is generally defined as progressive, irreversible loss of neurons, which may affect either the peripheral or central nervous system (CNS). Neurodegenerative diseases (NDs) include highly debilitating illnesses, such as Alzheimer (AD), Parkinson disease (PD), amyotrophic lateral sclerosis, Huntington disease, spinocerebellar ataxias, and prion diseases (PrD). The hallmark event, which is thought to be at the root of these diseases, is the progressive accumulation of misfolded protein aggregates. Major basic processes include abnormal protein dynamics due to deficiency of the ubiquitin-proteosome-autophagy system, oxidative stress and free radical formation, endoplasmic reticulum stress, mitochondrial dysfunction and (secondary) disruptions of axonal transport.
Class
Human Diseases; Neurodegenerative disease
BRITE hierarchy
Pathway map
oaa05022 Pathways of neurodegeneration - multiple diseases
Ortholog table
Organism
Ornithorhynchus anatinus (platypus) [GN:
oaa ]
Gene
100084007 CHRM3; muscarinic acetylcholine receptor M3 isoform X2 [KO:K04131 ]
100091346 SPTBN2; spectrin beta chain, non-erythrocytic 2 isoform X1 [KO:K23932 ]
100080549 GRM5; LOW QUALITY PROTEIN: metabotropic glutamate receptor 5 [KO:K04604 ]
100080691 guanine nucleotide-binding protein G(q) subunit alpha isoform X1 [KO:K04634 ]
100078508 PLCB1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 isoform X1 [KO:K05858 ] [EC:3.1.4.11 ]
100084272 PLCB4; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1 [KO:K05858 ] [EC:3.1.4.11 ]
100078757 PLCG1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 isoform X1 [KO:K01116 ] [EC:3.1.4.11 ]
100075749 ITPR1; inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
100082705 GRIN1; glutamate receptor ionotropic, NMDA 1 isoform X1 [KO:K05208 ]
100681823 GRIN2C; LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2C [KO:K05211 ]
100681261 CACNA1B; voltage-dependent N-type calcium channel subunit alpha-1B isoform X1 [KO:K04849 ]
100082618 CACNA1C; voltage-dependent L-type calcium channel subunit alpha-1C [KO:K04850 ]
100077296 CACNA1D; voltage-dependent L-type calcium channel subunit alpha-1D [KO:K04851 ]
100075939 CACNA1F; voltage-dependent L-type calcium channel subunit alpha-1F [KO:K04853 ]
100093447 CACNA1S; voltage-dependent L-type calcium channel subunit alpha-1S [KO:K04857 ]
100087588 CHRNA7; neuronal acetylcholine receptor subunit alpha-7 [KO:K04809 ]
100086258 ATP2A3; LOW QUALITY PROTEIN: sarcoplasmic/endoplasmic reticulum calcium ATPase 3 [KO:K05853 ] [EC:7.2.2.10 ]
100093302 PSMC6; 26S proteasome regulatory subunit 10B isoform X1 [KO:K03064 ]
100076043 PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028 ]
100077344 PSMD1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032 ]
100080824 PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033 ]
100074601 PSMD9; 26S proteasome non-ATPase regulatory subunit 9 isoform X1 [KO:K06693 ]
100079412 PSMD12; 26S proteasome non-ATPase regulatory subunit 12 isoform X1 [KO:K03035 ]
103166362 PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036 ]
100092874 PSMD6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037 ]
100078921 PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038 ]
100092761 PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039 ]
100077210 PSMD14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030 ]
100073491 PSMD8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031 ]
100074418 ADRM1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691 ]
100080121 VAPB; vesicle-associated membrane protein-associated protein B/C [KO:K10707 ]
100091907 ATF6; cyclic AMP-dependent transcription factor ATF-6 alpha isoform X1 [KO:K09054 ]
100079980 ERN1; LOW QUALITY PROTEIN: serine/threonine-protein kinase/endoribonuclease IRE1 [KO:K08852 ] [EC:2.7.11.1 3.1.26.-]
100074113 EIF2S1; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237 ]
100089902 ATF4; cyclic AMP-dependent transcription factor ATF-4 [KO:K04374 ]
100080859 NDUFV3; NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial isoform X2 [KO:K03944 ]
100078945 NDUFA1; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [KO:K03945 ]
100088525 NDUFA2; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [KO:K03946 ]
103169972 NDUFA3; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 [KO:K03947 ]
114814719 NDUFA4L2; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2 [KO:K03948 ]
100076349 NDUFA5; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 [KO:K03949 ]
100086818 NDUFA6; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [KO:K03950 ]
103171189 NDUFA7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 [KO:K03951 ]
100081651 NDUFA8; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 isoform X1 [KO:K03952 ]
100085363 NDUFA9; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial isoform X1 [KO:K03953 ]
100080496 NDUFA10; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial [KO:K03954 ]
100082311 NDUFA11; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 [KO:K03956 ]
100073802 NDUFA12; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [KO:K11352 ]
100682250 NDUFA13; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 [KO:K11353 ]
103167180 NDUFB1; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 [KO:K03957 ]
100086429 NDUFB2; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial [KO:K03958 ]
100089265 NDUFB3; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 [KO:K03959 ]
100089450 NDUFB4; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 [KO:K03960 ]
100083885 NDUFB5; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial [KO:K03961 ]
100680990 NDUFB6; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 [KO:K03962 ]
114813135 NDUFB7; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [KO:K03963 ]
100084515 NDUFB8; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial [KO:K03964 ]
100080588 NDUFB9; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [KO:K03965 ]
100081152 NDUFB10; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 [KO:K03966 ]
114812795 NDUFB11; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial [KO:K11351 ]
114807989 NDUFS2; NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial [KO:K03935 ] [EC:7.1.1.2 ]
100082649 NDUFS3; NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial [KO:K03936 ] [EC:7.1.1.2 ]
100075551 NDUFS4; NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial isoform X1 [KO:K03937 ]
100076967 NDUFS5; NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 [KO:K03938 ]
100081627 NDUFS6; NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [KO:K03939 ]
100076603 NDUFS7; NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial isoform X1 [KO:K03940 ] [EC:7.1.1.2 ]
114809999 NDUFS8; NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [KO:K03941 ] [EC:7.1.1.2 ]
100092030 NDUFC1; NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial [KO:K03967 ]
100083131 SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234 ] [EC:1.3.5.1 ]
100074487 SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235 ] [EC:1.3.5.1 ]
100089418 SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236 ]
114815211 SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237 ]
100076685 cytochrome c oxidase subunit 4 isoform 1, mitochondrial isoform X1 [KO:K02263 ]
114806037 cytochrome c oxidase subunit 4 isoform 2, mitochondrial [KO:K02263 ]
100091985 cytochrome c oxidase subunit 7A-related protein, mitochondrial [KO:K02270 ]
100680772 ATP5F1C; ATP synthase subunit gamma, mitochondrial isoform X1 [KO:K02136 ]
100076804 ATP5PB; ATP synthase F(0) complex subunit B1, mitochondrial [KO:K02127 ]
100084526 ATP5MC3; ATP synthase F(0) complex subunit C3, mitochondrial [KO:K02128 ]
100090032 ATP5MC2; ATP synthase F(0) complex subunit C2, mitochondrial [KO:K02128 ]
114814979 ATP5MC1; ATP synthase F(0) complex subunit C1, mitochondrial [KO:K02128 ]
114817674 ATP5PF; ATP synthase-coupling factor 6, mitochondrial [KO:K02131 ]
100079428 VDAC1; voltage-dependent anion-selective channel protein 1 [KO:K05862 ]
100085676 TOMM40L; mitochondrial import receptor subunit TOM40B [KO:K11518 ]
103165965 TOMM40; mitochondrial import receptor subunit TOM40 homolog [KO:K11518 ]
100087467 PPP3CC; serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
100083890 PPP3CA; serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
100073776 PPP3CB; serine/threonine-protein phosphatase 2B catalytic subunit beta isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
100081646 FASLG; tumor necrosis factor ligand superfamily member 6 [KO:K04389 ]
103165091 FAS; tumor necrosis factor receptor superfamily member 6 isoform X1 [KO:K04390 ]
100075011 VDAC2; voltage-dependent anion-selective channel protein 2 [KO:K15040 ]
100076584 VDAC3; voltage-dependent anion-selective channel protein 3 isoform X1 [KO:K15041 ]
100073402 APAF1; apoptotic protease-activating factor 1 isoform X1 [KO:K02084 ]
100082738 MAP1LC3B; microtubule-associated proteins 1A/1B light chain 3B [KO:K10435 ]
114816899 MAP1LC3A; microtubule-associated proteins 1A/1B light chain 3A [KO:K10435 ]
100077165 TANK; TRAF family member-associated NF-kappa-B activator [KO:K12650 ]
100073471 C9orf72; guanine nucleotide exchange C9orf72 homolog isoform X1 [KO:K23609 ]
100079581 RB1CC1; RB1-inducible coiled-coil protein 1 isoform X1 [KO:K17589 ]
100093574 AMBRA1; LOW QUALITY PROTEIN: activating molecule in BECN1-regulated autophagy protein 1 [KO:K17985 ]
100681077 ATG14; beclin 1-associated autophagy-related key regulator [KO:K17889 ]
100081216 ATG2B; autophagy-related protein 2 homolog B isoform X1 [KO:K17906 ]
100681456 ATG2A; autophagy-related protein 2 homolog A isoform X1 [KO:K17906 ]
100078638 WIPI1; WD repeat domain phosphoinositide-interacting protein 1 isoform X1 [KO:K17908 ]
100082003 WIPI2; WD repeat domain phosphoinositide-interacting protein 2 [KO:K17908 ]
100090119 ZFYVE1; zinc finger FYVE domain-containing protein 1 isoform X1 [KO:K17603 ]
100076962 FIG4; polyphosphoinositide phosphatase isoform X1 [KO:K22913 ] [EC:3.1.3.-]
100085735 TNFRSF1A; tumor necrosis factor receptor superfamily member 1A isoform X1 [KO:K03158 ]
103166118 TNFRSF1B; tumor necrosis factor receptor superfamily member 1B isoform X1 [KO:K05141 ]
100083396 DNAH17; LOW QUALITY PROTEIN: dynein heavy chain 17, axonemal [KO:K10408 ]
100089249 LOW QUALITY PROTEIN: dynein heavy chain 9, axonemal-like [KO:K10408 ]
103167043 DNAH2; LOW QUALITY PROTEIN: dynein heavy chain 2, axonemal [KO:K10408 ]
100079142 DNALI1; axonemal dynein light intermediate polypeptide 1 [KO:K10410 ]
100089453 CAMK2G; calcium/calmodulin-dependent protein kinase type II subunit gamma isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
100079279 CAMK2A; calcium/calmodulin-dependent protein kinase type II subunit alpha isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
100074083 CAMK2D; calcium/calmodulin-dependent protein kinase type II subunit delta isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
100089905 CAMK2B; calcium/calmodulin-dependent protein kinase type II subunit beta isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
100077194 LRP6; low-density lipoprotein receptor-related protein 6 [KO:K03068 ]
100091980 DVL3; segment polarity protein dishevelled homolog DVL-3 isoform X1 [KO:K02353 ]
100089867 DVL2; segment polarity protein dishevelled homolog DVL-2 [KO:K02353 ]
100681615 DVL1; segment polarity protein dishevelled homolog DVL-1 isoform X1 [KO:K02353 ]
100090019 AGER; advanced glycosylation end product-specific receptor [KO:K19722 ]
100083819 NFKB1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580 ]
100073393 CSF1; macrophage colony-stimulating factor 1 isoform X1 [KO:K05453 ]
Compound
C01245 D-myo-Inositol 1,4,5-trisphosphate
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04599 1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine
C11310 1-Methyl-4-phenylpyridinium
C16514 Amyloid beta protein 40
C16515 Amyloid beta protein 42
C21011 [Protein]-N(epsilon)-(carboxymethyl)lysine
C21012 [Protein]-N(epsilon)-(carboxyethyl)lysine
Reference
Authors
Gan L, Cookson MR, Petrucelli L, La Spada AR
Title
Converging pathways in neurodegeneration, from genetics to mechanisms.
Journal
Reference
Authors
Dugger BN, Dickson DW
Title
Pathology of Neurodegenerative Diseases.
Journal
Reference
Authors
Jellinger KA
Title
Basic mechanisms of neurodegeneration: a critical update.
Journal
Reference
Authors
Jellinger KA
Title
Recent advances in our understanding of neurodegeneration.
Journal
Reference
Authors
Van Bulck M, Sierra-Magro A, Alarcon-Gil J, Perez-Castillo A, Morales-Garcia JA
Title
Novel Approaches for the Treatment of Alzheimer's and Parkinson's Disease.
Journal
Reference
Authors
Ross CA, Poirier MA
Title
Protein aggregation and neurodegenerative disease.
Journal
Reference
Authors
Soto C, Pritzkow S
Title
Protein misfolding, aggregation, and conformational strains in neurodegenerative diseases.
Journal
Reference
Authors
Dantuma NP, Bott LC
Title
The ubiquitin-proteasome system in neurodegenerative diseases: precipitating factor, yet part of the solution.
Journal
Reference
Authors
Zheng C, Geetha T, Babu JR
Title
Failure of ubiquitin proteasome system: risk for neurodegenerative diseases.
Journal
Reference
Authors
Park H, Kang JH, Lee S
Title
Autophagy in Neurodegenerative Diseases: A Hunter for Aggregates.
Journal
Reference
Authors
Malik BR, Maddison DC, Smith GA, Peters OM
Title
Autophagic and endo-lysosomal dysfunction in neurodegenerative disease.
Journal
Reference
Authors
Metaxakis A, Ploumi C, Tavernarakis N
Title
Autophagy in Age-Associated Neurodegeneration.
Journal
Reference
Authors
Vidal RL, Matus S, Bargsted L, Hetz C
Title
Targeting autophagy in neurodegenerative diseases.
Journal
Reference
Authors
Menzies FM, Fleming A, Caricasole A, Bento CF, Andrews SP, Ashkenazi A, Fullgrabe J, Jackson A, Jimenez Sanchez M, Karabiyik C, Licitra F, Lopez Ramirez A, Pavel M, Puri C, Renna M, Ricketts T, Schlotawa L, Vicinanza M, Won H, Zhu Y, Skidmore J, Rubinsztein DC
Title
Autophagy and Neurodegeneration: Pathogenic Mechanisms and Therapeutic Opportunities.
Journal
Reference
Authors
Chu CT
Title
Mechanisms of selective autophagy and mitophagy: Implications for neurodegenerative diseases.
Journal
Reference
Authors
Kim I, Xu W, Reed JC
Title
Cell death and endoplasmic reticulum stress: disease relevance and therapeutic opportunities.
Journal
Reference
Authors
Doyle KM, Kennedy D, Gorman AM, Gupta S, Healy SJ, Samali A
Title
Unfolded proteins and endoplasmic reticulum stress in neurodegenerative disorders.
Journal
Reference
Authors
Halliday M, Hughes D, Mallucci GR
Title
Fine-tuning PERK signaling for neuroprotection.
Journal
Reference
Authors
Rozpedek-Kaminska W, Siwecka N, Wawrzynkiewicz A, Wojtczak R, Pytel D, Diehl JA, Majsterek I
Title
The PERK-Dependent Molecular Mechanisms as a Novel Therapeutic Target for Neurodegenerative Diseases.
Journal
Reference
Authors
Hetz C, Mollereau B
Title
Disturbance of endoplasmic reticulum proteostasis in neurodegenerative diseases.
Journal
Reference
Authors
Bezprozvanny I
Title
Calcium signaling and neurodegenerative diseases.
Journal
Reference
Authors
Ureshino RP, Erustes AG, Bassani TB, Wachilewski P, Guarache GC, Nascimento AC, Costa AJ, Smaili SS, Pereira GJDS
Title
The Interplay between Ca(2+) Signaling Pathways and Neurodegeneration.
Journal
Reference
Authors
Golpich M, Amini E, Mohamed Z, Azman Ali R, Mohamed Ibrahim N, Ahmadiani A
Title
Mitochondrial Dysfunction and Biogenesis in Neurodegenerative diseases: Pathogenesis and Treatment.
Journal
Reference
Authors
Morfini GA, Burns M, Binder LI, Kanaan NM, LaPointe N, Bosco DA, Brown RH Jr, Brown H, Tiwari A, Hayward L, Edgar J, Nave KA, Garberrn J, Atagi Y, Song Y, Pigino G, Brady ST
Title
Axonal transport defects in neurodegenerative diseases.
Journal
Reference
Authors
Gibbs KL, Greensmith L, Schiavo G
Title
Regulation of Axonal Transport by Protein Kinases.
Journal
Reference
Authors
Millecamps S, Julien JP
Title
Axonal transport deficits and neurodegenerative diseases.
Journal
Reference
Authors
Sleigh JN, Rossor AM, Fellows AD, Tosolini AP, Schiavo G
Title
Axonal transport and neurological disease.
Journal
Reference
Authors
Perlson E, Maday S, Fu MM, Moughamian AJ, Holzbaur EL
Title
Retrograde axonal transport: pathways to cell death?
Journal
Related pathway
oaa04141 Protein processing in endoplasmic reticulum
oaa04933 AGE-RAGE signaling pathway in diabetic complications
KO pathway
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