PATHWAY: omy04020 Help
Entry
Name
Calcium signaling pathway - Oncorhynchus mykiss (rainbow trout)
Description
Ca2+ that enters the cell from the outside is a principal source of signal Ca2+. Entry of Ca2+ is driven by the presence of a large electrochemical gradient across the plasma membrane. Cells use this external source of signal Ca2+ by activating various entry channels with widely different properties. The voltage-operated channels (VOCs) are found in excitable cells and generate the rapid Ca2+ fluxes that control fast cellular processes. There are many other Ca2+-entry channels, such as the receptor-operated channels (ROCs), for example the NMDA (N-methyl-D-aspartate) receptors (NMDARs) that respond to glutamate. There also are second-messenger-operated channels (SMOCs) and store-operated channels (SOCs).
The other principal source of Ca2+ for signalling is the internal stores that are located primarily in the endoplasmic/sarcoplasmic reticulum (ER/SR), in which inositol-1,4,5-trisphosphate receptors (IP3Rs) or ryanodine receptors (RYRs) regulate the release of Ca2+. The principal activator of these channels is Ca2+ itself and this process of Ca2+-induced Ca2+ release is central to the mechanism of Ca2+ signalling. Various second messengers or modulators also control the release of Ca2+. IP3, which is generated by pathways using different isoforms of phospholipase C (PLCbeta, delta, epsilon, gamma and zeta), regulates the IP3Rs. Cyclic ADP-ribose (cADPR) releases Ca2+ via RYRs. Nicotinic acid adenine dinucleotide phosphate (NAADP) may activate a distinct Ca2+ release mechanism on separate acidic Ca2+ stores. Ca2+ release via the NAADP-sensitive mechanism may also feedback onto either RYRs or IP3Rs. cADPR and NAADP are generated by CD38. This enzyme might be sensitive to the cellular metabolism, as ATP and NADH inhibit it.
The influx of Ca2+ from the environment or release from internal stores causes a very rapid and dramatic increase in cytoplasmic calcium concentration, which has been widely exploited for signal transduction. Some proteins, such as troponin C (TnC) involved in muscle contraction, directly bind to and sense Ca2+. However, in other cases Ca2+ is sensed through intermediate calcium sensors such as calmodulin (CALM).
Class
Environmental Information Processing; Signal transduction
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Oncorhynchus mykiss (rainbow trout) [GN:
omy ]
Gene
110489978 htr5ab; 5-hydroxytryptamine (serotonin) receptor 5A, genome duplicate b isoform X1 [KO:K04161 ]
110496280 guanine nucleotide-binding protein G(s) subunit alpha-like [KO:K04632 ]
110522807 guanine nucleotide-binding protein G(s) subunit alpha isoform X2 [KO:K04632 ]
110530804 guanine nucleotide-binding protein G(s) subunit alpha-like [KO:K04632 ]
110532055 guanine nucleotide-binding protein G(s) subunit alpha isoform X1 [KO:K04632 ]
110508251 guanine nucleotide-binding protein G(olf) subunit alpha isoform X1 [KO:K04633 ]
110535248 guanine nucleotide-binding protein G(olf) subunit alpha isoform X1 [KO:K04633 ]
110489752 gnal; guanine nucleotide-binding protein G(olf) subunit alpha isoform X1 [KO:K04633 ]
110530889 guanine nucleotide-binding protein G(olf) subunit alpha isoform X1 [KO:K04633 ]
100136597 testis catalytic subunit of cyclic adenosine 3', 5'-monophosphate dependent protein kinase [KO:K04345 ] [EC:2.7.11.11 ]
110491767 atp2a1l; ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like isoform X1 [KO:K05853 ] [EC:7.2.2.10 ]
110537204 calcium release-activated calcium channel protein 1 isoform X1 [KO:K16056 ]
110518351 voltage-dependent L-type calcium channel subunit alpha-1C isoform X1 [KO:K04850 ]
110518394 voltage-dependent L-type calcium channel subunit alpha-1C isoform X1 [KO:K04850 ]
100135991 cacna1da; voltage-dependent L-type calcium channel subunit alpha-1D [KO:K04851 ]
110531171 voltage-dependent L-type calcium channel subunit alpha-1D [KO:K04851 ]
110493200 cacna1da; calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X1 [KO:K04851 ]
110512770 cacna1fb; calcium channel, voltage-dependent, L type, alpha 1F subunit [KO:K04853 ]
110531219 voltage-dependent L-type calcium channel subunit alpha-1D [KO:K04853 ]
110494953 dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1 isoform X1 [KO:K04857 ]
110528387 dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1 [KO:K04857 ]
110491948 dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1 isoform X1 [KO:K04857 ]
110494931 voltage-dependent P/Q-type calcium channel subunit alpha-1A [KO:K04344 ]
110485216 voltage-dependent P/Q-type calcium channel subunit alpha-1A [KO:K04344 ]
110539011 cacna1aa; voltage-dependent P/Q-type calcium channel subunit alpha-1A isoform X1 [KO:K04344 ]
110487190 voltage-dependent P/Q-type calcium channel subunit alpha-1A [KO:K04344 ]
110509332 cacna1bb; voltage-dependent N-type calcium channel subunit alpha-1B [KO:K04849 ]
100136656 cacna1b; neuronal-type voltage-gated calcium channel subunit Cav2.2 [KO:K04849 ]
110525473 cacna1ba; calcium channel, voltage-dependent, N type, alpha 1B subunit, a [KO:K04849 ]
118936269 voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1 [KO:K04849 ]
110508606 voltage-dependent R-type calcium channel subunit alpha-1E isoform X1 [KO:K04852 ]
110522764 voltage-dependent R-type calcium channel subunit alpha-1E [KO:K04852 ]
110524442 probable voltage-dependent R-type calcium channel subunit alpha-1E isoform X1 [KO:K04852 ]
110530973 voltage-dependent R-type calcium channel subunit alpha-1E isoform X1 [KO:K04852 ]
110498733 voltage-dependent T-type calcium channel subunit alpha-1G [KO:K04854 ]
110492818 LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1G-like [KO:K04854 ]
110512628 voltage-dependent T-type calcium channel subunit alpha-1H-like [KO:K04855 ]
110514177 voltage-dependent T-type calcium channel subunit alpha-1H-like [KO:K04855 ]
110495059 voltage-dependent T-type calcium channel subunit alpha-1I [KO:K04856 ]
110538728 voltage-dependent T-type calcium channel subunit alpha-1I-like isoform X1 [KO:K04856 ]
110539012 voltage-dependent T-type calcium channel subunit alpha-1I-like isoform X1 [KO:K04856 ]
110487510 voltage-dependent T-type calcium channel subunit alpha-1I-like [KO:K04856 ]
110496009 neuronal acetylcholine receptor subunit alpha-7 isoform X2 [KO:K04809 ]
110506200 neuronal acetylcholine receptor subunit alpha-7 isoform X1 [KO:K04809 ]
110519673 neuronal acetylcholine receptor subunit alpha-7-like isoform X1 [KO:K04809 ]
110506946 neuronal acetylcholine receptor subunit alpha-7 isoform X1 [KO:K04809 ]
110520844 neuronal acetylcholine receptor subunit alpha-7 isoform X1 [KO:K04809 ]
110526914 grin1b; glutamate receptor ionotropic, NMDA 1b isoform X1 [KO:K05208 ]
110524129 grin3bb; glutamate receptor ionotropic, NMDA 3B isoform X1 [KO:K05214 ]
110500335 htr2cl1; 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled-like 1 [KO:K04157 ]
100135989 lhcgr; luteinizing hormone/choriogonadotropin receptor precursor [KO:K04248 ]
110535781 guanine nucleotide-binding protein G(q) subunit alpha [KO:K04634 ]
110537041 guanine nucleotide-binding protein G(q) subunit alpha isoform X1 [KO:K04634 ]
110525384 guanine nucleotide-binding protein G(q) subunit alpha [KO:K04634 ]
110524330 guanine nucleotide-binding protein subunit alpha-11 isoform X1 [KO:K04634 ]
110521465 guanine nucleotide-binding protein subunit alpha-11 isoform X5 [KO:K04635 ]
110495735 guanine nucleotide-binding protein subunit alpha-11 isoform X1 [KO:K04635 ]
110528895 guanine nucleotide-binding protein subunit alpha-11 isoform X1 [KO:K04635 ]
110525385 guanine nucleotide-binding protein subunit alpha-14-like [KO:K04636 ]
110521467 guanine nucleotide-binding protein subunit alpha-11 isoform X1 [KO:K04637 ]
110524331 guanine nucleotide-binding protein subunit alpha-14 isoform X1 [KO:K04637 ]
110485559 platelet-derived growth factor subunit A-like isoform X1 [KO:K04359 ]
118938428 platelet-derived growth factor subunit A-like isoform X1 [KO:K04359 ]
110489170 fgf1a; putative fibroblast growth factor 1 isoform X1 [KO:K18496 ]
110522314 vegfab; vascular endothelial growth factor A-A isoform X1 [KO:K05448 ]
101268965 rtgdnf; glial cell line-derived neurotrophic factor precursor [KO:K05452 ]
110535145 plcd1a; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
110491724 plcd3b; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
110538951 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
110527520 plcd4a; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4 isoform X1 [KO:K05857 ] [EC:3.1.4.11 ]
110510780 LOW QUALITY PROTEIN: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 [KO:K05858 ] [EC:3.1.4.11 ]
110500326 plcb3; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 isoform X1 [KO:K05858 ] [EC:3.1.4.11 ]
110492526 plcg1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 isoform X1 [KO:K01116 ] [EC:3.1.4.11 ]
110499006 plce1; 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 isoform X1 [KO:K05860 ] [EC:3.1.4.11 ]
110527884 itpr1b; LOW QUALITY PROTEIN: inositol 1,4,5-trisphosphate receptor type 1 [KO:K04958 ]
110528182 inositol 1,4,5-trisphosphate receptor type 1 isoform X9 [KO:K04958 ]
110494246 inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
110494585 inositol 1,4,5-trisphosphate receptor type 1 isoform X1 [KO:K04958 ]
110522681 inositol 1,4,5-trisphosphate receptor type 2 isoform X1 [KO:K04959 ]
110497694 inositol 1,4,5-trisphosphate receptor type 2 isoform X1 [KO:K04959 ]
110492618 inositol 1,4,5-trisphosphate receptor type 3 isoform X1 [KO:K04960 ]
110502625 vdac2; voltage-dependent anion-selective channel protein 2 [KO:K15040 ]
110536186 vdac3; voltage-dependent anion-selective channel protein 2 isoform X3 [KO:K15041 ]
110523828 zgc:56235; voltage-dependent anion-selective channel protein 2 isoform X2 [KO:K15041 ]
110537096 voltage-dependent anion-selective channel protein 2 isoform X1 [KO:K15041 ]
110525814 voltage-dependent anion-selective channel protein 2 isoform X1 [KO:K15041 ]
100301662 si:dkey-251i10.1; uncharacterized protein LOC100038774 homolog [KO:K05863 ]
110496992 phosphorylase b kinase regulatory subunit alpha, liver isoform isoform X1 [KO:K07190 ]
110514320 phka2; phosphorylase b kinase regulatory subunit alpha, liver isoform isoform X1 [KO:K07190 ]
110506355 phkb; phosphorylase b kinase regulatory subunit beta isoform X1 [KO:K07190 ]
110526270 phosphorylase b kinase regulatory subunit beta isoform X1 [KO:K07190 ]
110532906 phka1a; phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform isoform X1 [KO:K07190 ]
110528479 camk2g2; calcium/calmodulin-dependent protein kinase type II subunit gamma isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
110510184 camk2a; calcium/calmodulin-dependent protein kinase type II subunit alpha isoform X1 [KO:K04515 ] [EC:2.7.11.17 ]
110531869 camk2d1; calcium/calmodulin-dependent protein kinase type II delta 1 chain isoform X5 [KO:K04515 ] [EC:2.7.11.17 ]
110489092 ppp3cb; serine/threonine-protein phosphatase 2B catalytic subunit beta isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
110536272 serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
110510109 ppp3ca; serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
110537109 serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
110504663 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
100499601 ppp3ccb; serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
110531778 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
110500629 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X2 [KO:K04348 ] [EC:3.1.3.16 ]
110534116 serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1 [KO:K04348 ] [EC:3.1.3.16 ]
110489695 nuclear factor of activated T-cells, cytoplasmic 1 isoform X1 [KO:K04446 ]
110496069 nfatc1; nuclear factor of activated T-cells, cytoplasmic 1 [KO:K04446 ]
110496087 nuclear factor of activated T-cells, cytoplasmic 1 isoform X1 [KO:K04446 ]
110518416 nuclear factor of activated T-cells, cytoplasmic 1 isoform X1 [KO:K04446 ]
110528566 nuclear factor of activated T-cells, cytoplasmic 2 isoform X3 [KO:K17332 ]
110492056 nuclear factor of activated T-cells, cytoplasmic 2 isoform X1 [KO:K17332 ]
110532618 nuclear factor of activated T-cells, cytoplasmic 2 isoform X1 [KO:K17332 ]
110499184 nfatc3b; nuclear factor of activated T-cells, cytoplasmic 3 [KO:K17333 ]
110506757 nuclear factor of activated T-cells, cytoplasmic 3-like isoform X1 [KO:K17333 ]
110526622 nfatc3a; nuclear factor of activated T-cells, cytoplasmic 3 isoform X1 [KO:K17333 ]
110530573 nfatc4; nuclear factor of activated T-cells, cytoplasmic 4 [KO:K17334 ]
110501757 pde1a; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1 [KO:K13755 ] [EC:3.1.4.17 ]
110535511 calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X2 [KO:K13755 ] [EC:3.1.4.17 ]
110520320 calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1 [KO:K13755 ] [EC:3.1.4.17 ]
Compound
C01245 D-myo-Inositol 1,4,5-trisphosphate
C06124 Sphingosine 1-phosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
C13051 Nicotinic acid adenine dinucleotide phosphate
Reference
Authors
Berridge MJ, Bootman MD, Roderick HL.
Title
Calcium signalling: dynamics, homeostasis and remodelling.
Journal
Reference
Authors
Berridge MJ, Lipp P, Bootman MD.
Title
The versatility and universality of calcium signalling.
Journal
Reference
Authors
Wang MC, Dolphin A, Kitmitto A.
Title
L-type voltage-gated calcium channels: understanding function through structure.
Journal
Reference
Authors
Ferrier GR, Howlett SE.
Title
Cardiac excitation-contraction coupling: role of membrane potential in regulation of contraction.
Journal
Reference
Authors
Keef KD, Hume JR, Zhong J.
Title
Regulation of cardiac and smooth muscle Ca(2+) channels (Ca(V)1.2a,b) by protein kinases.
Journal
Reference
Authors
Hell JW, Appleyard SM, Yokoyama CT, Warner C, Catterall WA.
Title
Differential phosphorylation of two size forms of the N-type calcium channel alpha 1 subunit which have different COOH termini.
Journal
J Biol Chem 269:7390-6 (1994)
Reference
Authors
Yunker AM.
Title
Modulation and pharmacology of low voltage-activated ("T-Type") calcium channels.
Journal
Reference
Authors
Yakel JL.
Title
Calcineurin regulation of synaptic function: from ion channels to transmitter release and gene transcription.
Journal
Reference
Authors
Fukunaga K, Miyamoto E.
Title
A working model of CaM kinase II activity in hippocampal long-term potentiation and memory.
Journal
Reference
Authors
Della Rocca GJ, van Biesen T, Daaka Y, Luttrell DK, Luttrell LM, Lefkowitz RJ.
Title
Ras-dependent mitogen-activated protein kinase activation by G protein-coupled receptors. Convergence of Gi- and Gq-mediated pathways on calcium/calmodulin, Pyk2, and Src kinase.
Journal
Reference
Authors
Furuichi T, Mikoshiba K.
Title
Inositol 1, 4, 5-trisphosphate receptor-mediated Ca2+ signaling in the brain.
Journal
Reference
Authors
Bruce JI, Straub SV, Yule DI.
Title
Crosstalk between cAMP and Ca2+ signaling in non-excitable cells.
Journal
Reference
Authors
Lee HC, Munshi C, Graeff R.
Title
Structures and activities of cyclic ADP-ribose, NAADP and their metabolic enzymes.
Journal
Reference
Authors
Crompton M.
Title
Mitochondrial intermembrane junctional complexes and their role in cell death.
Journal
Reference
Authors
Grewal SS, York RD, Stork PJ.
Title
Extracellular-signal-regulated kinase signalling in neurons.
Journal
Reference
Authors
Trushin SA, Pennington KN, Carmona EM, Asin S, Savoy DN, Billadeau DD, Paya CV.
Title
Protein kinase Calpha (PKCalpha) acts upstream of PKCtheta to activate IkappaB kinase and NF-kappaB in T lymphocytes.
Journal
Reference
Authors
Hutchins JR, Dikovskaya D, Clarke PR.
Title
Regulation of Cdc2/cyclin B activation in Xenopus egg extracts via inhibitory phosphorylation of Cdc25C phosphatase by Ca(2+)/calmodulin-dependent protein [corrected] kinase II.
Journal
Reference
Authors
Tornquist K
Title
Sphingosine 1-phosphate, sphingosine kinase and autocrine calcium signalling in thyroid cells.
Journal
Reference
Authors
Feske S
Title
Immunodeficiency due to defects in store-operated calcium entry.
Journal
Reference
Authors
Giachini FR, Lima VV, Hannan JL, Carneiro FS, Webb RC, Tostes RC
Title
STIM1/Orai1-mediated store-operated Ca2+ entry: the tip of the iceberg.
Journal
Reference
Authors
Baba Y, Kurosaki T
Title
[Regulation of store-operated calcium entry by STIM1].
Journal
Seikagaku 80:1123-8 (2008)
Reference
Authors
Galione A, Evans AM, Ma J, Parrington J, Arredouani A, Cheng X, Zhu MX
Title
The acid test: the discovery of two-pore channels (TPCs) as NAADP-gated endolysosomal Ca(2+) release channels.
Journal
Reference
Authors
Beard NA, Wei L, Dulhunty AF
Title
Ca(2+) signaling in striated muscle: the elusive roles of triadin, junctin, and calsequestrin.
Journal
Reference
Authors
Marty I
Title
Triadin regulation of the ryanodine receptor complex.
Journal
Reference
Authors
Arvanitis DA, Vafiadaki E, Sanoudou D, Kranias EG
Title
Histidine-rich calcium binding protein: the new regulator of sarcoplasmic reticulum calcium cycling.
Journal
Related pathway
omy04070 Phosphatidylinositol signaling system
KO pathway
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