PATHWAY: taes03040 Help
Entry
Name
Spliceosome - Triticum aestivum (bread wheat)
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Triticum aestivum (bread wheat) [GN:
taes ]
Gene
123147742 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1 [KO:K12818 ] [EC:5.6.2.6 ]
123096920 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1 [KO:K12818 ] [EC:5.6.2.6 ]
123097652 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1 [KO:K12820 ] [EC:5.6.2.6 ]
123085691 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1 [KO:K12820 ] [EC:5.6.2.6 ]
123144212 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1 [KO:K12820 ] [EC:5.6.2.6 ]
123092313 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1 [KO:K12820 ] [EC:5.6.2.6 ]
123045027 small nuclear ribonucleoprotein-associated protein B'-like [KO:K11086 ]
123188677 small nuclear ribonucleoprotein-associated protein B'-like [KO:K11086 ]
123052809 small nuclear ribonucleoprotein-associated protein B'-like [KO:K11086 ]
123093863 small nuclear ribonucleoprotein Sm D2-like isoform X1 [KO:K11096 ]
123099084 small nuclear ribonucleoprotein Sm D2-like isoform X1 [KO:K11096 ]
123106044 small nuclear ribonucleoprotein Sm D2-like isoform X1 [KO:K11096 ]
123136591 probable small nuclear ribonucleoprotein F isoform X1 [KO:K11098 ]
123144104 probable small nuclear ribonucleoprotein F isoform X1 [KO:K11098 ]
123125080 U1 small nuclear ribonucleoprotein 70 kDa-like isoform X1 [KO:K11093 ]
123077359 transcription initiation factor TFIID subunit 15b-like [KO:K13098 ]
123068849 transcription initiation factor TFIID subunit 15b-like [KO:K13098 ]
123114359 U2 small nuclear ribonucleoprotein A'-like isoform X1 [KO:K11092 ]
123117810 U2 small nuclear ribonucleoprotein A'-like isoform X1 [KO:K11092 ]
123087572 U2 small nuclear ribonucleoprotein A'-like isoform X1 [KO:K11092 ]
123110046 U2 small nuclear ribonucleoprotein A'-like isoform X1 [KO:K11092 ]
123160901 PHD finger-like domain-containing protein 5A isoform X1 [KO:K12834 ]
780697 splicing factor U2af large subunit B isoform X1 [KO:K12837 ]
780665 splicing factor U2af large subunit A isoform X1 [KO:K12837 ]
123165310 survival of motor neuron-related-splicing factor 30-like [KO:K12839 ]
123147611 survival of motor neuron-related-splicing factor 30-like [KO:K12839 ]
123157819 survival of motor neuron-related-splicing factor 30-like [KO:K12839 ]
123077245 DNA-damage-repair/toleration protein DRT111, chloroplastic [KO:K12840 ]
123044268 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [KO:K12662 ]
123097378 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [KO:K12662 ]
123085934 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [KO:K12662 ]
123052147 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [KO:K12662 ]
123092118 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [KO:K12662 ]
123182944 U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 [KO:K12844 ]
123145861 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [KO:K12846 ]
123128729 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [KO:K12846 ]
123138992 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [KO:K12846 ]
123148229 110 kDa U5 small nuclear ribonucleoprotein component CLO-like [KO:K12852 ]
123155944 110 kDa U5 small nuclear ribonucleoprotein component CLO-like [KO:K12852 ]
123163862 110 kDa U5 small nuclear ribonucleoprotein component CLO-like [KO:K12852 ]
123165887 U5 small nuclear ribonucleoprotein 40 kDa protein-like [KO:K12857 ]
123149413 U5 small nuclear ribonucleoprotein 40 kDa protein-like [KO:K12857 ]
123158104 U5 small nuclear ribonucleoprotein 40 kDa protein-like [KO:K12857 ]
123110926 stromal 70 kDa heat shock-related protein, chloroplastic-like [KO:K03283 ]
123117764 stromal 70 kDa heat shock-related protein, chloroplastic-like [KO:K03283 ]
100415854 stromal 70 kDa heat shock-related protein, chloroplastic [KO:K03283 ]
123102745 stromal 70 kDa heat shock-related protein, chloroplastic-like [KO:K03283 ]
123149896 coiled-coil domain-containing protein 12-like isoform X1 [KO:K12871 ]
123187881 apoptotic chromatin condensation inducer in the nucleus-like [KO:K12875 ]
123052015 apoptotic chromatin condensation inducer in the nucleus-like [KO:K12875 ]
123086003 apoptotic chromatin condensation inducer in the nucleus-like [KO:K12875 ]
123091905 apoptotic chromatin condensation inducer in the nucleus-like [KO:K12875 ]
123135686 nuclear cap-binding protein subunit 1-like isoform X1 [KO:K12882 ]
123165488 heterogeneous nuclear ribonucleoprotein 27C isoform X1 [KO:K12741 ]
123148023 heterogeneous nuclear ribonucleoprotein 1-like isoform X1 [KO:K12741 ]
123080303 glycine-rich RNA-binding protein 2, mitochondrial-like [KO:K12741 ]
123113869 glycine-rich RNA-binding protein 3, mitochondrial-like [KO:K12741 ]
123063110 glycine-rich RNA-binding protein 2, mitochondrial-like [KO:K12741 ]
123138129 RNA-binding protein Musashi homolog 2-like isoform X1 [KO:K12741 ]
123072018 glycine-rich RNA-binding protein 2, mitochondrial-like [KO:K12741 ]
123144408 heterogeneous nuclear ribonucleoprotein 1-like isoform X1 [KO:K12741 ]
123043736 serine/arginine-rich splicing factor SR30-like isoform X1 [KO:K12890 ]
123129630 serine/arginine-rich splicing factor SR30-like isoform X1 [KO:K12890 ]
780668 serine/arginine-rich-splicing factor SR34 isoform X1 [KO:K12890 ]
123078916 serine/arginine-rich-splicing factor SR34-like isoform X1 [KO:K12890 ]
123061814 serine/arginine-rich-splicing factor SR34-like isoform X1 [KO:K12890 ]
123097510 serine/arginine-rich-splicing factor SR34-like isoform X1 [KO:K12890 ]
123051591 serine/arginine-rich-splicing factor SR34-like isoform X1 [KO:K12890 ]
123085974 serine/arginine-rich splicing factor SR34A-like isoform X1 [KO:K12890 ]
123053202 serine/arginine-rich-splicing factor SR34-like isoform X1 [KO:K12890 ]
123070505 serine/arginine-rich-splicing factor SR34-like isoform X1 [KO:K12890 ]
780660 serine/arginine-rich splicing factor SR30 [KO:K12890 ]
123052029 serine/arginine-rich splicing factor SC35-like isoform X1 [KO:K12891 ]
123131876 serine/arginine-rich splicing factor RS41-like isoform X1 [KO:K12893 ]
123135841 serine/arginine-rich splicing factor RS41-like isoform X1 [KO:K12893 ]
123050970 serine/arginine-rich splicing factor RS31-like isoform X1 [KO:K12893 ]
123143365 serine/arginine-rich splicing factor RS41-like isoform X1 [KO:K12893 ]
780657 serine/arginine-rich splicing factor RSZ21 [KO:K12896 ]
780658 serine/arginine-rich splicing factor RSZ21A [KO:K12896 ]
780696 serine/arginine-rich splicing factor RS2Z33 isoform X1 [KO:K12896 ]
123060562 serine/arginine-rich splicing factor RS2Z32-like isoform X1 [KO:K12896 ]
123113946 serine/arginine-rich splicing factor RS2Z32-like isoform X1 [KO:K12896 ]
123039238 serine/arginine-rich splicing factor RS2Z33-like isoform X1 [KO:K12896 ]
123157181 serine/arginine-rich splicing factor RSZ21A-like isoform X1 [KO:K12896 ]
123180114 serine/arginine-rich splicing factor RS2Z33-like isoform X1 [KO:K12896 ]
123069120 serine/arginine-rich splicing factor RS2Z32-like isoform X1 [KO:K12896 ]
123180619 serine/arginine-rich splicing factor RS2Z32-like isoform X1 [KO:K12896 ]
123106446 serine/arginine-rich splicing factor RS2Z33-like isoform X1 [KO:K12896 ]
123144786 serine/arginine-rich splicing factor RSZ23-like isoform X1 [KO:K12896 ]
780661 serine/arginine-rich splicing factor SR45a isoform X1 [KO:K12897 ]
123156736 serine/arginine-rich splicing factor SR45a-like isoform X1 [KO:K12897 ]
123110686 serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 [KO:K12900 ]
123119693 serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 [KO:K12900 ]
123085875 serine/arginine-rich SC35-like splicing factor SCL28 isoform X1 [KO:K12900 ]
123102480 serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 [KO:K12900 ]
123087284 serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 [KO:K12900 ]
Reference
Authors
Wahl MC, Will CL, Luhrmann R
Title
The spliceosome: design principles of a dynamic RNP machine.
Journal
Reference
Authors
Morris DP, Greenleaf AL
Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
Journal
Reference
Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
Journal
Reference
Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
Title
Spliceosome structure: piece by piece.
Journal
KO pathway
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