KEGG   PATHWAY: ghi03018
Entry
ghi03018                    Pathway                                
Name
RNA degradation - Gossypium hirsutum (upland cotton)
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ghi03018  RNA degradation
ghi03018

Other DBs
GO: 0006401
Organism
Gossypium hirsutum (upland cotton) [GN:ghi]
Gene
107936888  exosome complex component CSL4 [KO:K07573]
107914407  exosome complex component RRP4 homolog [KO:K03679]
107914474  exosome complex component RRP4 homolog [KO:K03679]
107921000  exosome complex component RRP4 homolog [KO:K03679]
107890797  exosome complex component RRP4 homolog [KO:K03679]
107933413  putative exosome complex component rrp40 [KO:K03681]
107887158  putative exosome complex component rrp40 isoform X1 [KO:K03681]
107931625  exosome complex component RRP43 [KO:K12586]
107921769  exosome complex component RRP43 [KO:K12586]
107934100  exosome complex component RRP43 [KO:K12586]
107928852  exosome complex component RRP43-like [KO:K12586]
107906248  exosome complex component RRP41-like [KO:K12587]
107959013  exosome complex component RRP41-like [KO:K12587]
107904275  exosome complex component RRP42 [KO:K12589]
121216210  exosome complex component RRP42-like [KO:K12589]
107909774  exosome complex component RRP41 homolog [KO:K11600]
107923046  exosome complex component RRP41 homolog [KO:K11600]
107893411  exosome complex exonuclease RRP46 homolog [KO:K12590]
107901538  exosome complex exonuclease RRP46 homolog isoform X1 [KO:K12590]
107937951  exosome complex exonuclease RRP46 homolog [KO:K12590]
107889314  exosome complex component RRP45B isoform X1 [KO:K03678]
107924689  exosome complex component RRP45A-like [KO:K03678]
107950557  exosome complex component RRP45A isoform X1 [KO:K03678]
107891422  exosome complex component RRP45B [KO:K03678]
107954781  exosome complex exonuclease RRP44 homolog A [KO:K12585] [EC:3.1.13.-]
107955297  exosome complex exonuclease RRP44 homolog A [KO:K12585] [EC:3.1.13.-]
107937362  protein RRP6-like 2 isoform X1 [KO:K12591] [EC:3.1.13.-]
107893774  protein RRP6-like 2 isoform X1 [KO:K12591] [EC:3.1.13.-]
107920252  LOW QUALITY PROTEIN: protein RRP6-like 2 [KO:K12591] [EC:3.1.13.-]
107893143  protein RRP6-like 2 isoform X1 [KO:K12591] [EC:3.1.13.-]
107913697  protein RRP6-like 2 [KO:K12591] [EC:3.1.13.-]
121223096  protein RRP6-like 2 [KO:K12591] [EC:3.1.13.-]
107906821  nuclear nucleic acid-binding protein C1D [KO:K12592]
107958981  nuclear nucleic acid-binding protein C1D [KO:K12592]
107950143  uncharacterized protein LOC107950143 isoform X1 [KO:K12593]
107901737  uncharacterized protein LOC107901737 [KO:K12593]
107906567  uncharacterized protein LOC107906567 [KO:K12593]
107885983  uncharacterized protein LOC107885983 [KO:K12593]
107952110  terminal nucleotidyltransferase 4A [KO:K03514] [EC:2.7.7.19]
107918027  terminal nucleotidyltransferase 4A [KO:K03514] [EC:2.7.7.19]
107961953  DExH-box ATP-dependent RNA helicase DExH9 isoform X1 [KO:K12598] [EC:5.6.2.6]
107893491  DExH-box ATP-dependent RNA helicase DExH10-like [KO:K12598] [EC:5.6.2.6]
107899861  DExH-box ATP-dependent RNA helicase DExH9-like isoform X1 [KO:K12598] [EC:5.6.2.6]
107888367  DExH-box ATP-dependent RNA helicase DExH10-like [KO:K12598] [EC:5.6.2.6]
107950212  DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [KO:K12599] [EC:5.6.2.6]
121215524  DExH-box ATP-dependent RNA helicase DExH11-like isoform X1 [KO:K12599] [EC:5.6.2.6]
107905709  LOW QUALITY PROTEIN: tetratricopeptide repeat protein SKI3 [KO:K12600]
107905746  tetratricopeptide repeat protein SKI3 [KO:K12600]
107932285  WD repeat-containing protein VIP3-like [KO:K12602]
107901093  WD repeat-containing protein VIP3-like [KO:K12602]
107929849  WD repeat-containing protein VIP3-like [KO:K12602]
107897717  WD repeat-containing protein VIP3-like [KO:K12602]
107946845  carbon catabolite repressor protein 4 homolog 4 isoform X1 [KO:K12603] [EC:3.1.13.4]
107933500  carbon catabolite repressor protein 4 homolog 4 [KO:K12603] [EC:3.1.13.4]
107889486  carbon catabolite repressor protein 4 homolog 1 [KO:K12603] [EC:3.1.13.4]
107891241  carbon catabolite repressor protein 4 homolog 1 [KO:K12603] [EC:3.1.13.4]
107922222  carbon catabolite repressor protein 4 homolog 1 isoform X1 [KO:K12603] [EC:3.1.13.4]
107899210  carbon catabolite repressor protein 4 homolog 1 [KO:K12603] [EC:3.1.13.4]
107948232  carbon catabolite repressor protein 4 homolog 1 isoform X1 [KO:K12603] [EC:3.1.13.4]
107911887  CCR4-NOT transcription complex subunit 1 isoform X1 [KO:K12604]
107924016  CCR4-NOT transcription complex subunit 1 [KO:K12604]
107945544  LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1 [KO:K12604]
107931419  probable NOT transcription complex subunit VIP2 isoform X1 [KO:K12605]
107938436  probable NOT transcription complex subunit VIP2 isoform X1 [KO:K12605]
107959074  probable NOT transcription complex subunit VIP2 isoform X2 [KO:K12605]
107906175  probable NOT transcription complex subunit VIP2 isoform X1 [KO:K12605]
107932511  probable NOT transcription complex subunit VIP2 isoform X1 [KO:K12605]
121212693  probable NOT transcription complex subunit VIP2 isoform X1 [KO:K12605]
107933858  CCR4-NOT transcription complex subunit 3 isoform X1 [KO:K12580]
107920023  LOW QUALITY PROTEIN: general negative regulator of transcription subunit 3 [KO:K12580]
107893651  CCR4-NOT transcription complex subunit 3 isoform X1 [KO:K12580]
107888554  CCR4-NOT transcription complex subunit 3 isoform X1 [KO:K12580]
107959061  uncharacterized protein LOC107959061 isoform X2 [KO:K10643] [EC:2.3.2.27]
107906189  uncharacterized protein LOC107906189 isoform X1 [KO:K10643] [EC:2.3.2.27]
107954061  uncharacterized protein LOC107954061 isoform X1 [KO:K10643] [EC:2.3.2.27]
107932928  uncharacterized protein LOC107932928 isoform X1 [KO:K10643] [EC:2.3.2.27]
107932485  uncharacterized protein LOC107932485 [KO:K10643] [EC:2.3.2.27]
107931182  uncharacterized protein LOC107931182 [KO:K10643] [EC:2.3.2.27]
121212695  uncharacterized protein LOC121212695 [KO:K10643] [EC:2.3.2.27]
107955404  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107915760  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107962412  probable CCR4-associated factor 1 homolog 6 [KO:K12581]
107893466  probable CCR4-associated factor 1 homolog 7 [KO:K12581]
107948088  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107948092  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107927890  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107927891  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107934627  probable CCR4-associated factor 1 homolog 6 [KO:K12581]
107888391  probable CCR4-associated factor 1 homolog 7 [KO:K12581]
107898011  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107898017  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107898018  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107901685  probable CCR4-associated factor 1 homolog 6 isoform X1 [KO:K12581]
107953746  probable CCR4-associated factor 1 homolog 7 [KO:K12581]
107906843  probable CCR4-associated factor 1 homolog 7 [KO:K12581]
107954120  probable CCR4-associated factor 1 homolog 9 [KO:K12581]
107907710  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107907711  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107931785  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107953800  probable CCR4-associated factor 1 homolog 7 [KO:K12581]
107951705  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
107889193  probable CCR4-associated factor 1 homolog 9 [KO:K12581]
107891568  probable CCR4-associated factor 1 homolog 9 [KO:K12581]
107959001  probable CCR4-associated factor 1 homolog 7 [KO:K12581]
107948451  probable CCR4-associated factor 1 homolog 6 isoform X1 [KO:K12581]
121231988  probable CCR4-associated factor 1 homolog 7 [KO:K12581]
121202911  probable CCR4-associated factor 1 homolog 7 [KO:K12581]
107955076  cell differentiation protein rcd1-like [KO:K12606]
107955077  CCR4-NOT transcription complex subunit 9-like [KO:K12606]
107955079  protein CAF40-like [KO:K12606]
107956816  cell differentiation protein rcd1-like [KO:K12606]
107955643  cell differentiation protein rcd1 isoform X1 [KO:K12606]
107955647  cell differentiation protein rcd1-like isoform X1 [KO:K12606]
107956907  cell differentiation protein rcd1-like isoform X2 [KO:K12606]
107963045  CCR4-NOT transcription complex subunit 9 [KO:K12606]
107945315  CCR4-NOT transcription complex subunit 9 isoform X3 [KO:K12606]
121225310  CCR4-NOT transcription complex subunit 9-like isoform X1 [KO:K12606]
107889925  CCR4-NOT transcription complex subunit 9-like [KO:K12606]
121203750  CCR4-NOT transcription complex subunit 9-like [KO:K12606]
107962588  CCR4-NOT transcription complex subunit 10 isoform X1 [KO:K12607]
107911641  CCR4-NOT transcription complex subunit 10 isoform X1 [KO:K12607]
107912378  CCR4-NOT transcription complex subunit 10 isoform X1 [KO:K12607]
121225227  CCR4-NOT transcription complex subunit 10-like isoform X1 [KO:K12607]
107901326  CCR4-NOT transcription complex subunit 10-like isoform X1 [KO:K12607]
121212589  CCR4-NOT transcription complex subunit 10-like isoform X1 [KO:K12607]
107955520  ABC transporter I family member 21 [KO:K12608]
107944005  ABC transporter I family member 20 [KO:K12608]
107898830  ABC transporter I family member 20 [KO:K12608]
107958639  ABC transporter I family member 21 [KO:K12608]
107909540  DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1 [KO:K14442] [EC:5.6.2.6]
107959639  DExH-box ATP-dependent RNA helicase DExH6 [KO:K14442] [EC:5.6.2.6]
107927597  DExH-box ATP-dependent RNA helicase DExH3 [KO:K14442] [EC:5.6.2.6]
107959741  DExH-box ATP-dependent RNA helicase DExH6 [KO:K14442] [EC:5.6.2.6]
107923888  DExH-box ATP-dependent RNA helicase DExH3-like isoform X1 [KO:K14442] [EC:5.6.2.6]
107904655  DExH-box ATP-dependent RNA helicase DExH3 isoform X2 [KO:K14442] [EC:5.6.2.6]
107899406  DExH-box ATP-dependent RNA helicase DExH1 isoform X1 [KO:K14442] [EC:5.6.2.6]
107948284  DExH-box ATP-dependent RNA helicase DExH1 isoform X1 [KO:K14442] [EC:5.6.2.6]
121216234  DExH-box ATP-dependent RNA helicase DExH3-like isoform X1 [KO:K14442] [EC:5.6.2.6]
107886710  DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1 [KO:K14442] [EC:5.6.2.6]
107922431  poly(A)-specific ribonuclease PARN isoform X1 [KO:K01148] [EC:3.1.13.4]
107912511  poly(A)-specific ribonuclease PARN-like [KO:K01148] [EC:3.1.13.4]
107952988  poly(A)-specific ribonuclease PARN isoform X1 [KO:K01148] [EC:3.1.13.4]
107922763  poly(A)-specific ribonuclease PARN-like isoform X1 [KO:K01148] [EC:3.1.13.4]
107922770  uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X1 [KO:K01148] [EC:3.1.13.4]
107895718  polyadenylate-binding protein 6-like isoform X2 [KO:K13126]
107899510  polyadenylate-binding protein 7 [KO:K13126]
107963192  polyadenylate-binding protein 3-like [KO:K13126]
107961293  polyadenylate-binding protein 2-like [KO:K13126]
107901740  polyadenylate-binding protein 7-like isoform X1 [KO:K13126]
107901761  polyadenylate-binding protein 3 [KO:K13126]
107894289  polyadenylate-binding protein 8 [KO:K13126]
107917920  polyadenylate-binding protein 2 [KO:K13126]
107903180  polyadenylate-binding protein 2-like isoform X1 [KO:K13126]
107913888  polyadenylate-binding protein 6-like isoform X2 [KO:K13126]
107935017  polyadenylate-binding protein 8 [KO:K13126]
107922144  polyadenylate-binding protein 2-like [KO:K13126]
107914044  30S ribosomal protein 2, chloroplastic [KO:K13126]
107940789  polyadenylate-binding protein 2-like [KO:K13126]
107941535  polyadenylate-binding protein 2-like [KO:K13126]
107931523  polyadenylate-binding protein 7 [KO:K13126]
107959531  30S ribosomal protein 2, chloroplastic [KO:K13126]
107908893  polyadenylate-binding protein 8 [KO:K13126]
107924305  polyadenylate-binding protein 2 isoform X1 [KO:K13126]
121223563  polyadenylate-binding protein 7-like isoform X1 [KO:K13126]
121225661  polyadenylate-binding protein 8-like [KO:K13126]
121209668  polyadenylate-binding protein 2-like isoform X1 [KO:K13126]
107936789  mRNA-decapping enzyme-like protein [KO:K12611] [EC:3.-.-.-]
107954602  mRNA-decapping enzyme-like protein isoform X2 [KO:K12611] [EC:3.-.-.-]
107892578  mRNA-decapping enzyme-like protein [KO:K12611] [EC:3.-.-.-]
107929788  mRNA-decapping enzyme-like protein isoform X1 [KO:K12611] [EC:3.-.-.-]
107949044  mRNA-decapping enzyme-like protein isoform X2 [KO:K12611] [EC:3.-.-.-]
107896331  mRNA-decapping enzyme-like protein isoform X1 [KO:K12611] [EC:3.-.-.-]
107951708  mRNA-decapping enzyme-like protein [KO:K12611] [EC:3.-.-.-]
107915844  mRNA-decapping enzyme subunit 2 [KO:K12613] [EC:3.6.1.62]
121207727  mRNA-decapping enzyme subunit 2-like [KO:K12613] [EC:3.6.1.62]
107900897  DEAD-box ATP-dependent RNA helicase 8 [KO:K12614] [EC:5.6.2.7]
107911969  DEAD-box ATP-dependent RNA helicase 8 [KO:K12614] [EC:5.6.2.7]
107930495  DEAD-box ATP-dependent RNA helicase 8 [KO:K12614] [EC:5.6.2.7]
107957248  DEAD-box ATP-dependent RNA helicase 8 [KO:K12614] [EC:5.6.2.7]
107934317  DEAD-box ATP-dependent RNA helicase 8 [KO:K12614] [EC:5.6.2.7]
107952921  DEAD-box ATP-dependent RNA helicase 8 [KO:K12614] [EC:5.6.2.7]
107954545  DEAD-box ATP-dependent RNA helicase 8 [KO:K12614] [EC:5.6.2.7]
107922025  DEAD-box ATP-dependent RNA helicase 8-like [KO:K12614] [EC:5.6.2.7]
107919802  enhancer of mRNA-decapping protein 4 [KO:K12616]
107926255  enhancer of mRNA-decapping protein 4-like [KO:K12616]
107891943  enhancer of mRNA-decapping protein 4 [KO:K12616]
107912671  protein PAT1 homolog 1 isoform X1 [KO:K12617]
107948554  protein PAT1 homolog 1 [KO:K12617]
107932667  protein PAT1 homolog isoform X1 [KO:K12617]
107928350  protein PAT1 homolog [KO:K12617]
107909163  protein PAT1 homolog [KO:K12617]
107954859  protein PAT1 homolog 1-like isoform X1 [KO:K12617]
107912935  protein PAT1 homolog [KO:K12617]
107919862  protein PAT1 homolog 1 [KO:K12617]
107923959  protein PAT1 homolog 1 isoform X1 [KO:K12617]
107941309  protein PAT1 homolog [KO:K12617]
121202900  protein PAT1 homolog 1-like isoform X1 [KO:K12617]
121214089  protein PAT1 homolog [KO:K12617]
107957582  5'-3' exoribonuclease 3 isoform X1 [KO:K12619] [EC:3.1.13.-]
107943427  5'-3' exoribonuclease 3 isoform X1 [KO:K12619] [EC:3.1.13.-]
107906055  sm-like protein LSM1B [KO:K12620]
107929975  sm-like protein LSM1B [KO:K12620]
107932265  sm-like protein LSM1B [KO:K12620]
107901049  sm-like protein LSM1B isoform X1 [KO:K12620]
107951090  sm-like protein LSM1B isoform X1 [KO:K12620]
107958367  sm-like protein LSM1B [KO:K12620]
107958842  sm-like protein LSM1A [KO:K12620]
107907093  sm-like protein LSM1A [KO:K12620]
107949227  sm-like protein LSM2 [KO:K12621]
121204966  sm-like protein LSM2 [KO:K12621]
107914111  sm-like protein LSM3B [KO:K12622]
107932177  sm-like protein LSM3A [KO:K12622]
107950784  sm-like protein LSM3A [KO:K12622]
121217861  sm-like protein LSM3B [KO:K12622]
107946085  sm-like protein LSM4 [KO:K12623]
107949669  sm-like protein LSM4 isoform X1 [KO:K12623]
107931236  probable U6 snRNA-associated Sm-like protein LSm4 [KO:K12623]
107917334  sm-like protein LSM4 [KO:K12623]
107912591  sm-like protein LSM5 [KO:K12624]
107955231  sm-like protein LSM5 [KO:K12624]
107954920  sm-like protein LSM5 [KO:K12624]
107923065  sm-like protein LSM5 [KO:K12624]
107927439  sm-like protein LSM36B [KO:K12625]
107903391  sm-like protein LSM36B [KO:K12625]
107928430  sm-like protein LSM36B [KO:K12625]
121206315  sm-like protein LSM36B [KO:K12625]
107918492  sm-like protein LSM7 [KO:K12626]
107926248  sm-like protein LSM7 [KO:K12626]
107938625  sm-like protein LSM8 [KO:K12627]
107916624  sm-like protein LSM8 [KO:K12627]
107942751  sm-like protein LSM8 [KO:K12627]
107939866  sm-like protein LSM8 [KO:K12627]
107949751  enolase 1, chloroplastic [KO:K01689] [EC:4.2.1.11]
107942127  enolase [KO:K01689] [EC:4.2.1.11]
107933168  enolase [KO:K01689] [EC:4.2.1.11]
107908720  enolase-like [KO:K01689] [EC:4.2.1.11]
107953663  enolase [KO:K01689] [EC:4.2.1.11]
107887050  enolase 1, chloroplastic [KO:K01689] [EC:4.2.1.11]
107890127  enolase [KO:K01689] [EC:4.2.1.11]
107905355  enolase [KO:K01689] [EC:4.2.1.11]
107935612  cytosolic enolase 3 [KO:K01689] [EC:4.2.1.11]
121212681  cytosolic enolase 3-like [KO:K01689] [EC:4.2.1.11]
107888666  polyribonucleotide nucleotidyltransferase 2, mitochondrial [KO:K00962] [EC:2.7.7.8]
107892267  polyribonucleotide nucleotidyltransferase 2, mitochondrial [KO:K00962] [EC:2.7.7.8]
107891187  probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [KO:K00962] [EC:2.7.7.8]
107913610  polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1 [KO:K00962] [EC:2.7.7.8]
107887310  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
107953863  ATP-dependent 6-phosphofructokinase 6-like isoform X1 [KO:K00850] [EC:2.7.1.11]
107907166  ATP-dependent 6-phosphofructokinase 3 isoform X1 [KO:K00850] [EC:2.7.1.11]
107958729  ATP-dependent 6-phosphofructokinase 3 isoform X1 [KO:K00850] [EC:2.7.1.11]
107894800  ATP-dependent 6-phosphofructokinase 7-like [KO:K00850] [EC:2.7.1.11]
107901151  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
107953618  ATP-dependent 6-phosphofructokinase 4, chloroplastic-like isoform X1 [KO:K00850] [EC:2.7.1.11]
107913191  ATP-dependent 6-phosphofructokinase 4, chloroplastic [KO:K00850] [EC:2.7.1.11]
107932044  ATP-dependent 6-phosphofructokinase 3-like isoform X2 [KO:K00850] [EC:2.7.1.11]
107905700  ATP-dependent 6-phosphofructokinase 2-like [KO:K00850] [EC:2.7.1.11]
107905736  ATP-dependent 6-phosphofructokinase 2-like [KO:K00850] [EC:2.7.1.11]
107949993  ATP-dependent 6-phosphofructokinase 5, chloroplastic isoform X1 [KO:K00850] [EC:2.7.1.11]
107901506  ATP-dependent 6-phosphofructokinase 3-like [KO:K00850] [EC:2.7.1.11]
107901507  ATP-dependent 6-phosphofructokinase 3-like [KO:K00850] [EC:2.7.1.11]
107951697  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
107929968  ATP-dependent 6-phosphofructokinase 6 isoform X1 [KO:K00850] [EC:2.7.1.11]
107897082  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
107891838  heat shock 70 kDa protein, mitochondrial [KO:K04043]
107947387  LOW QUALITY PROTEIN: heat shock 70 kDa protein, mitochondrial [KO:K04043]
107901919  heat shock 70 kDa protein, mitochondrial [KO:K04043]
107947388  heat shock 70 kDa protein, mitochondrial [KO:K04043]
107920833  heat shock 70 kDa protein, mitochondrial isoform X1 [KO:K04043]
121203553  heat shock 70 kDa protein, mitochondrial-like [KO:K04043]
107915751  chaperonin 60 subunit beta 2, chloroplastic [KO:K04077] [EC:5.6.1.7]
107906100  chaperonin CPN60-like 2, mitochondrial [KO:K04077] [EC:5.6.1.7]
107906140  ruBisCO large subunit-binding protein subunit beta, chloroplastic [KO:K04077] [EC:5.6.1.7]
107918674  chaperonin 60 subunit beta 4, chloroplastic [KO:K04077] [EC:5.6.1.7]
107924713  chaperonin CPN60-2, mitochondrial isoform X1 [KO:K04077] [EC:5.6.1.7]
107924729  chaperonin CPN60-2, mitochondrial [KO:K04077] [EC:5.6.1.7]
107896231  chaperonin 60 subunit beta 2, chloroplastic isoform X1 [KO:K04077] [EC:5.6.1.7]
107958389  chaperonin CPN60-like 2, mitochondrial [KO:K04077] [EC:5.6.1.7]
107895043  chaperonin 60 subunit beta 4, chloroplastic [KO:K04077] [EC:5.6.1.7]
107890588  chaperonin CPN60-2, mitochondrial [KO:K04077] [EC:5.6.1.7]
107890591  chaperonin CPN60-2, mitochondrial [KO:K04077] [EC:5.6.1.7]
107944216  chaperonin CPN60-2, mitochondrial [KO:K04077] [EC:5.6.1.7]
121220985  chaperonin CPN60-2, mitochondrial [KO:K04077] [EC:5.6.1.7]
121229358  ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [KO:K04077] [EC:5.6.1.7]
Reference
PMID:19239894
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
PMID:16968219
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
PMID:16939780
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
PMID:17471261
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
PMID:17447862
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
PMID:16766188
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
PMID:17560162
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
ghi03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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