KEGG   PATHWAY: ocu04120
Entry
ocu04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Oryctolagus cuniculus (rabbit)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ocu04120  Ubiquitin mediated proteolysis
ocu04120

Other DBs
GO: 0016567
Organism
Oryctolagus cuniculus (rabbit) [GN:ocu]
Gene
100009132  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
100009207  CUL5; cullin-5 [KO:K10612]
100009225  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
100009418  [KO:K10591] [EC:2.3.2.26]
100009425  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
100009436  [KO:K02207] [EC:2.3.2.23]
100328700  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
100337922  [KO:K03872]
100338008  [KO:K02207] [EC:2.3.2.23]
100338118  [KO:K16060]
100338187  [KO:K06688] [EC:2.3.2.23]
100338221  [KO:K10593] [EC:2.3.2.26]
100338238  [KO:K10698] [EC:6.2.1.45]
100338447  [KO:K03875]
100338738  [KO:K03869]
100338868  [KO:K10588] [EC:2.3.2.26]
100338921  [KO:K25228]
100339096  [KO:K10573] [EC:2.3.2.23]
100339349  [KO:K10580] [EC:2.3.2.23]
100339386  [KO:K04694]
100339463  [KO:K03094]
100339509  [KO:K04706] [EC:2.3.2.-]
100339627  [KO:K16061]
100339717  [KO:K06689] [EC:2.3.2.23]
100340043  [KO:K03094]
100340120  [KO:K16060]
100340267  [KO:K10595] [EC:2.3.2.26]
100340312  [KO:K25228]
100340737  [KO:K03362]
100340823  [KO:K10688] [EC:2.3.2.23 2.3.2.25]
100340879  ELOB; elongin-B [KO:K03873]
100341019  [KO:K16064] [EC:2.3.2.-]
100341052  [KO:K10602] [EC:2.3.2.27]
100341057  [KO:K10579] [EC:2.3.2.34]
100341083  ELOC; elongin-C [KO:K03872]
100341176  [KO:K06689] [EC:2.3.2.23]
100341307  [KO:K10607] [EC:2.3.2.27]
100341427  [KO:K10590] [EC:2.3.2.26]
100341530  [KO:K10578] [EC:2.3.2.23]
100341684  [KO:K10580] [EC:2.3.2.23]
100342005  [KO:K20217] [EC:2.3.2.23]
100342142  [KO:K10144] [EC:2.3.2.27]
100342147  [KO:K25229]
100342168  [KO:K10447]
100342311  [KO:K03357]
100342432  [KO:K10586] [EC:2.3.2.23]
100342452  [KO:K03875]
100342464  [KO:K10575] [EC:2.3.2.23]
100342595  [KO:K04707] [EC:2.3.2.27]
100342658  [KO:K10592] [EC:2.3.2.26]
100342669  [KO:K10604] [EC:2.3.2.27]
100342681  [KO:K25228]
100342825  [KO:K10587] [EC:2.3.2.26]
100343047  [KO:K02927]
100343190  [KO:K03175] [EC:2.3.2.27]
100343272  [KO:K04555] [EC:2.3.2.23]
100343309  [KO:K10686] [EC:6.2.1.64]
100343351  [KO:K03358]
100343513  [KO:K03870]
100343655  [KO:K10580] [EC:2.3.2.23]
100343868  [KO:K10571]
100344222  [KO:K05630] [EC:2.3.2.26]
100344510  [KO:K10598] [EC:5.2.1.8]
100344750  [KO:K10614] [EC:2.3.2.26]
100344755  [KO:K10594] [EC:2.3.2.26]
100344895  [KO:K06689] [EC:2.3.2.23]
100344973  [KO:K10606] [EC:2.3.2.27]
100345084  [KO:K10613]
100345190  [KO:K04552] [EC:2.3.2.23]
100345196  [KO:K03350]
100345253  [KO:K04725] [EC:2.3.2.27]
100345408  [KO:K10687] [EC:2.3.2.34]
100345646  [KO:K07868]
100345665  [KO:K03355]
100345720  [KO:K10573] [EC:2.3.2.23]
100345752  [KO:K03347]
100345880  [KO:K10264]
100346018  [KO:K10582] [EC:2.3.2.23]
100346213  [KO:K02977]
100346312  [KO:K04552] [EC:2.3.2.23]
100346935  [KO:K10456]
100347269  [KO:K10605] [EC:2.3.2.27]
100347500  [KO:K10582] [EC:2.3.2.23]
100347511  [KO:K06689] [EC:2.3.2.23]
100347777  [KO:K06689] [EC:2.3.2.23]
100348202  [KO:K10687] [EC:2.3.2.34]
100348299  [KO:K03348]
100348379  [KO:K02977]
100348484  [KO:K04416] [EC:2.7.11.25]
100348547  [KO:K10583] [EC:2.3.2.23]
100348847  [KO:K10615] [EC:2.3.2.26]
100349700  [KO:K10447]
100349814  [KO:K04553] [EC:2.3.2.23]
100350053  [KO:K03871]
100350229  [KO:K03351]
100350286  [KO:K03352]
100350316  [KO:K04554] [EC:2.3.2.23]
100350478  [KO:K05633] [EC:2.3.2.26]
100350519  [KO:K03362]
100350589  [KO:K10585] [EC:2.3.2.23]
100350643  [KO:K10576] [EC:2.3.2.23]
100351102  [KO:K10609]
100351347  [KO:K04551]
100351382  [KO:K10054] [EC:2.3.2.-]
100352014  [KO:K10589] [EC:2.3.2.26]
100352258  [KO:K10570]
100352386  [KO:K10140]
100352519  [KO:K12456]
100352605  [KO:K07868]
100353099  [KO:K13305] [EC:2.3.2.26]
100353223  [KO:K10596] [EC:2.3.2.27]
100353301  [KO:K10608] [EC:2.3.2.27]
100353573  [KO:K04678] [EC:2.3.2.26]
100353764  [KO:K10580] [EC:2.3.2.23]
100353960  [KO:K10575] [EC:2.3.2.23]
100354069  [KO:K06689] [EC:2.3.2.23]
100354247  [KO:K10609]
100354475  [KO:K10610]
100354874  [KO:K03363]
100354913  [KO:K10601] [EC:2.3.2.27]
100354960  [KO:K20217] [EC:2.3.2.23]
100355225  [KO:K06689] [EC:2.3.2.23]
100355441  [KO:K03872]
100355469  [KO:K22517] [EC:2.3.2.27]
100355504  [KO:K10581] [EC:2.3.2.24]
100355519  [KO:K04649] [EC:2.3.2.23]
100355779  [KO:K10685] [EC:6.2.1.45]
100355829  [KO:K04506] [EC:2.3.2.27]
100356207  [KO:K10597] [EC:2.3.2.27]
100356214  [KO:K10260]
100356568  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
100356574  [KO:K10699] [EC:6.2.1.45]
100356696  [KO:K05632] [EC:2.3.2.26]
100356820  [KO:K10584] [EC:2.3.2.23]
100357072  [KO:K10291]
100357094  [KO:K03358]
100357218  [KO:K20217] [EC:2.3.2.23]
100357348  [KO:K03354]
100357447  [KO:K10684] [EC:6.2.1.45]
100357502  [KO:K03364]
100357839  [KO:K16063] [EC:2.3.2.-]
100358121  [KO:K04678] [EC:2.3.2.26]
100358501  [KO:K10599] [EC:2.3.2.27]
100358835  [KO:K03359]
100358886  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
100358924  [KO:K10577]
100359068  [KO:K04552] [EC:2.3.2.23]
100359101  [KO:K03353]
103345224  [KO:K10582] [EC:2.3.2.23]
103346588  [KO:K04696]
103347952  [KO:K10688] [EC:2.3.2.23 2.3.2.25]
103350360  [KO:K20217] [EC:2.3.2.23]
103350405  [KO:K10611]
103352470  [KO:K03868] [EC:2.3.2.32]
108176120  [KO:K06689] [EC:2.3.2.23]
127482727  [KO:K02207] [EC:2.3.2.23]
127482731  [KO:K10577]
127482782  [KO:K10600]
127483727  [KO:K25228]
127485962  [KO:K03178] [EC:6.2.1.45]
127486160  [KO:K02977]
127486574  [KO:K02207] [EC:2.3.2.23]
127486763  [KO:K06689] [EC:2.3.2.23]
127486895  [KO:K03349]
127487751  [KO:K10099]
127488420  [KO:K03352]
127488867  [KO:K08770]
127489705  [KO:K03178] [EC:6.2.1.45]
127489798  [KO:K02927]
127490057  [KO:K03178] [EC:6.2.1.45]
127490082  [KO:K09561] [EC:2.3.2.27]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ocu03050  Proteasome
KO pathway
ko04120   

DBGET integrated database retrieval system