KEGG   PATHWAY: ocu05170
Entry
ocu05170                    Pathway                                
Name
Human immunodeficiency virus 1 infection - Oryctolagus cuniculus (rabbit)
Description
Human immunodeficiency virus type 1 (HIV-1) , the causative agent of AIDS (acquired immunodeficiency syndrome), is a lentivirus belonging to the Retroviridae family. The primary cell surface receptor for HIV-1, the CD4 protein, and the co-receptor for HIV-1, either CCR5 or CXCR4, are found on macrophages and T lymphocytes. At the earliest step, sequential binding of virus envelope (Env) glycoprotein gp120 to CD4 and the co-receptor CCR5 or CXCR4 facilitates HIV-1 entry and has the potential to trigger critical signaling that may favor viral replication. At advanced stages of the disease, HIV-1 infection results in dramatic induction of T-cell (CD4+ T and CD8+ T cell) apoptosis both in infected and uninfected bystander T cells, a hallmark of HIV-1 pathogenesis. On the contrary, macrophages are resistant to the cytopathic effect of HIV-1 and produce virus for longer periods of time.
Class
Human Diseases; Infectious disease: viral
Pathway map
ocu05170  Human immunodeficiency virus 1 infection
ocu05170

Disease
H00406  Acquired immunodeficiency syndrome (AIDS)
H01563  HIV infection
Organism
Oryctolagus cuniculus (rabbit) [GN:ocu]
Gene
100008609  FAS; tumor necrosis factor receptor superfamily member 6 precursor [KO:K04390]
100008616  CD3E; T-cell surface glycoprotein CD3 epsilon chain precursor [KO:K06451]
100008617  CD247; T-cell surface glycoprotein CD3 zeta chain precursor [KO:K06453]
100008840  CASP3; caspase-3 [KO:K02187] [EC:3.4.22.56]
100008856  JUN; transcription factor Jun [KO:K04448]
100008859  [KO:K17333]
100008875  BCL2L1; bcl-2-like protein 1 [KO:K04570]
100008939  [KO:K04960]
100008941  GNB5; guanine nucleotide-binding protein subunit beta-5 [KO:K04539]
100009050  CALR; calreticulin precursor [KO:K08057]
100009088  TNF; tumor necrosis factor precursor [KO:K03156]
100009102  PRKCG; protein kinase C gamma type [KO:K19663] [EC:2.7.11.13]
100009152  CD4; T-cell surface glycoprotein CD4 precursor [KO:K06454]
100009207  CUL5; cullin-5 [KO:K10612]
100009260  RPS6KB1; ribosomal protein S6 kinase beta-1 [KO:K04688] [EC:2.7.11.1]
100009316  MAP2K1; dual specificity mitogen-activated protein kinase kinase 1 [KO:K04368] [EC:2.7.12.2]
100009423  PPP3CA; protein phosphatase 3 catalytic subunit alpha [KO:K04348] [EC:3.1.3.16]
100009487  PPP3CB; serine/threonine-protein phosphatase 2B catalytic subunit beta isoform [KO:K04348] [EC:3.1.3.16]
100009497  TLR4; toll-like receptor 4 [KO:K10160]
100009505  [KO:K04958]
100009535  PAK2; serine/threonine-protein kinase PAK 2 [KO:K04410] [EC:2.7.11.1]
100009578  TLR2; toll-like receptor 2 precursor [KO:K10159]
100037719  PRKCB; protein kinase C beta type isoform I [KO:K19662] [EC:2.7.11.13]
100037720  PRKCA; protein kinase C alpha type [KO:K02677] [EC:2.7.11.13]
100101579  CCR5; C-C chemokine receptor type 5 [KO:K04180]
100101592  [KO:K04399] [EC:3.4.22.62]
100126072  TRIM5; tripartite motif-containing protein 5 [KO:K10648] [EC:2.3.2.27]
100328685  PDIA3; protein disulfide-isomerase A3 precursor [KO:K08056] [EC:5.3.4.1]
100328905  IKBKG; NF-kappa-B essential modulator [KO:K07210]
100328967  [KO:K06751]
100337783  [KO:K04536]
100337822  [KO:K00922] [EC:2.7.1.153]
100337888  [KO:K03171]
100337922  [KO:K03872]
100337999  [KO:K04440] [EC:2.7.11.24]
100338332  [KO:K04538]
100338345  [KO:K04379]
100338391  [KO:K04630]
100338822  [KO:K06751]
100338989  [KO:K05868]
100339066  [KO:K04630]
100339463  [KO:K03094]
100339529  [KO:K06451]
100339821  [KO:K06751]
100339873  [KO:K04392]
100339953  [KO:K04432] [EC:2.7.12.2]
100340005  [KO:K09849]
100340043  [KO:K03094]
100340139  [KO:K05859] [EC:3.1.4.11]
100340649  [KO:K18750] [EC:3.5.4.-]
100340719  [KO:K04634]
100340737  [KO:K03362]
100340742  [KO:K05736] [EC:2.7.11.1]
100340811  [KO:K04729]
100340879  ELOB; elongin-B [KO:K03873]
100341050  [KO:K08738]
100341083  ELOC; elongin-C [KO:K03872]
100341175  [KO:K08738]
100341454  [KO:K12391]
100341515  [KO:K08738]
100341589  [KO:K05765]
100341605  [KO:K04733] [EC:2.7.11.1]
100341695  [KO:K04441] [EC:2.7.11.24]
100341934  [KO:K05734] [EC:2.7.11.1]
100342046  [KO:K14021]
100342201  [KO:K04546]
100342249  [KO:K04404]
100342283  [KO:K04534]
100342327  [KO:K04438]
100342358  [KO:K05871] [EC:2.7.10.2]
100342450  [KO:K04548]
100342664  [KO:K04440] [EC:2.7.11.24]
100342852  [KO:K04456] [EC:2.7.11.1]
100342931  [KO:K05415]
100343053  [KO:K11789] [EC:2.7.11.1]
100343190  [KO:K03175] [EC:2.3.2.27]
100343571  [KO:K04427] [EC:2.7.11.25]
100343637  [KO:K05867] [EC:3.1.3.48]
100344018  [KO:K05743] [EC:2.7.11.1]
100344073  [KO:K04389]
100344161  [KO:K04441] [EC:2.7.11.24]
100344241  [KO:K07828]
100344533  [KO:K06268]
100345181  [KO:K00922] [EC:2.7.1.153]
100345250  [KO:K02649]
100345526  [KO:K02183]
100345729  [KO:K02216] [EC:2.7.11.1]
100345730  [KO:K06632] [EC:2.7.11.1]
100345752  [KO:K03347]
100346106  [KO:K03158]
100346189  [KO:K04189]
100346625  [KO:K07825]
100346929  [KO:K04440] [EC:2.7.11.24]
100347003  [KO:K17334]
100347149  [KO:K28445]
100347273  [KO:K05733] [EC:2.7.11.1]
100347345  [KO:K04371] [EC:2.7.11.24]
100347407  [KO:K04366] [EC:2.7.11.1]
100347455  [KO:K05725] [EC:2.7.10.2]
100347487  [KO:K07827]
100347856  [KO:K02183]
100348350  [KO:K04540]
100348477  [KO:K04398] [EC:3.4.22.61]
100348561  [KO:K04371] [EC:2.7.11.24]
100348663  [KO:K00922] [EC:2.7.1.153]
100348921  [KO:K05735] [EC:2.7.11.1]
100348995  [KO:K06751]
100349085  [KO:K06751]
100349135  STING1; stimulator of interferon genes protein isoform X1 [KO:K12654]
100349155  [KO:K05653] [EC:7.4.2.14]
100349207  [KO:K12393]
100349247  [KO:K06751]
100349299  [KO:K04728] [EC:2.7.11.1]
100349407  CGAS; cyclic GMP-AMP synthase isoform X1 [KO:K17834] [EC:2.7.7.86]
100349426  [KO:K02580]
100349757  [KO:K06751]
100349872  [KO:K05141]
100349958  [KO:K01116] [EC:3.1.4.11]
100350107  [KO:K02183]
100350417  [KO:K08057]
100350519  [KO:K03362]
100350614  [KO:K04441] [EC:2.7.11.24]
100350679  [KO:K08055]
100351037  [KO:K08738]
100351102  [KO:K10609]
100351666  [KO:K05654] [EC:7.4.2.14]
100351856  [KO:K12394]
100352056  [KO:K04409] [EC:2.7.11.1]
100352212  [KO:K12393]
100352378  [KO:K04446]
100352392  CALM2; calmodulin [KO:K02183]
100352809  [KO:K06452]
100352863  [KO:K02087] [EC:2.7.11.22 2.7.11.23]
100352954  [KO:K07826]
100352965  [KO:K02861] [EC:2.7.11.1]
100353160  [KO:K22544] [EC:3.1.5.-]
100353305  [KO:K05760]
100353390  [KO:K05414]
100353673  [KO:K08738]
100353706  [KO:K04456] [EC:2.7.11.1]
100353824  [KO:K17332]
100354247  [KO:K10609]
100354468  [KO:K08738]
100354475  [KO:K10610]
100354611  [KO:K06751]
100354654  [KO:K05414]
100354694  [KO:K08058]
100354724  [KO:K08738]
100354743  [KO:K04730] [EC:2.7.11.1]
100354905  [KO:K02183]
100355084  [KO:K08738]
100355117  [KO:K12391]
100355197  [KO:K12395]
100355230  [KO:K04433] [EC:2.7.12.2]
100355340  [KO:K06452]
100355380  [KO:K06751]
100355417  [KO:K04544]
100355441  [KO:K03872]
100355669  [KO:K05414]
100355675  [KO:K02159]
100355888  [KO:K04467] [EC:2.7.11.10]
100355912  [KO:K05414]
100355991  [KO:K04726]
100356153  [KO:K06450]
100356164  [KO:K07203] [EC:2.7.11.1]
100356245  [KO:K04348] [EC:3.1.3.16]
100356371  RLA-A3; MHC class I antigen-like precursor [KO:K06751]
100356401  [KO:K07209] [EC:2.7.11.10]
100356406  [KO:K21771]
100356408  [KO:K06632] [EC:2.7.11.1]
100356419  [KO:K05414]
100356520  [KO:K07860]
100356678  [KO:K05414]
100356799  [KO:K04537]
100356806  [KO:K04959]
100356835  [KO:K05744] [EC:2.7.11.1]
100356922  [KO:K12392]
100357188  [KO:K12394]
100357194  [KO:K05414]
100357329  [KO:K08738]
100357341  [KO:K04734]
100357416  [KO:K21770]
100357708  [KO:K05414]
100357840  [KO:K08738]
100357841  [KO:K02649]
100358246  [KO:K04403]
100358587  [KO:K02158]
100358771  [KO:K05410] [EC:2.7.11.10]
100359062  [KO:K06640] [EC:2.7.11.1]
100359147  [KO:K04630]
100359205  [KO:K05765]
103345165  [KO:K02183]
103345313  [KO:K04431] [EC:2.7.12.2]
103346035  [KO:K04441] [EC:2.7.11.24]
103346571  [KO:K05411]
103347723  [KO:K08738]
103348387  [KO:K18750] [EC:3.5.4.-]
103349397  [KO:K02161]
103350153  [KO:K04347]
103350405  [KO:K10611]
103350926  [KO:K04541]
103352470  [KO:K03868] [EC:2.3.2.32]
108175836  [KO:K08738]
108176185  GNG14; putative guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-14 [KO:K04347]
108177128  [KO:K04545]
108177422  [KO:K08738]
108178285  [KO:K10784]
108178303  [KO:K05765]
108178480  [KO:K04542]
108178552  [KO:K04549]
108178730  [KO:K08738]
127483320  [KO:K08738]
127484730  [KO:K04688] [EC:2.7.11.1]
127485184  [KO:K04735]
127486116  [KO:K04456] [EC:2.7.11.1]
127486605  [KO:K02833]
127489236  [KO:K07827]
127489280  [KO:K04536]
127489461  [KO:K04368] [EC:2.7.12.2]
127489712  [KO:K04547]
Compound
C00076  Calcium cation
C00165  Diacylglycerol
C01245  D-myo-Inositol 1,4,5-trisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C20640  Cyclic GMP-AMP
Reference
  Authors
Evans VA, Khoury G, Saleh S, Cameron PU, Lewin SR
  Title
HIV persistence: chemokines and their signalling pathways.
  Journal
Cytokine Growth Factor Rev 23:151-7 (2012)
DOI:10.1016/j.cytogfr.2012.05.002
Reference
  Authors
Abbas W, Herbein G
  Title
Plasma membrane signaling in HIV-1 infection.
  Journal
Biochim Biophys Acta 1838:1132-42 (2014)
DOI:10.1016/j.bbamem.2013.06.020
Reference
  Authors
Wu Y, Yoder A
  Title
Chemokine coreceptor signaling in HIV-1 infection and pathogenesis.
  Journal
PLoS Pathog 5:e1000520 (2009)
DOI:10.1371/journal.ppat.1000520
Reference
  Authors
Choi WT, Duggineni S, Xu Y, Huang Z, An J
  Title
Drug discovery research targeting the CXC chemokine receptor 4 (CXCR4).
  Journal
J Med Chem 55:977-94 (2012)
DOI:10.1021/jm200568c
Reference
  Authors
Vorster PJ, Guo J, Yoder A, Wang W, Zheng Y, Xu X, Yu D, Spear M, Wu Y
  Title
LIM kinase 1 modulates cortical actin and CXCR4 cycling and is activated by HIV-1 to initiate viral infection.
  Journal
J Biol Chem 286:12554-64 (2011)
DOI:10.1074/jbc.M110.182238
Reference
  Authors
Das SR, Jameel S
  Title
Biology of the HIV Nef protein.
  Journal
Indian J Med Res 121:315-32 (2005)
Reference
  Authors
Roy N, Pacini G, Berlioz-Torrent C, Janvier K
  Title
Mechanisms underlying HIV-1 Vpu-mediated viral egress.
  Journal
Front Microbiol 5:177 (2014)
DOI:10.3389/fmicb.2014.00177
Reference
  Authors
Magadan JG, Bonifacino JS
  Title
Transmembrane domain determinants of CD4 Downregulation by HIV-1 Vpu.
  Journal
J Virol 86:757-72 (2012)
DOI:10.1128/JVI.05933-11
Reference
  Authors
Kumar A, Herbein G
  Title
The macrophage: a therapeutic target in HIV-1 infection.
  Journal
Mol Cell Ther 2:10 (2014)
DOI:10.1186/2052-8426-2-10
Reference
  Authors
Yokota S, Okabayashi T, Fujii N
  Title
The battle between virus and host: modulation of Toll-like receptor signaling pathways by virus infection.
  Journal
Mediators Inflamm 2010:184328 (2010)
DOI:10.1155/2010/184328
Reference
  Authors
Sauter D, Kirchhoff F
  Title
HIV replication: a game of hide and sense.
  Journal
Curr Opin HIV AIDS 11:173-81 (2016)
DOI:10.1097/COH.0000000000000233
Reference
  Authors
Altfeld M, Gale M Jr
  Title
Innate immunity against HIV-1 infection.
  Journal
Nat Immunol 16:554-62 (2015)
DOI:10.1038/ni.3157
Reference
  Authors
Pasquereau S, Kumar A, Herbein G
  Title
Targeting TNF and TNF Receptor Pathway in HIV-1 Infection: from Immune Activation to Viral Reservoirs.
  Journal
Viruses 9:64 (2017)
DOI:10.3390/v9040064
Reference
  Authors
Herbein G, Khan KA
  Title
Is HIV infection a TNF receptor signalling-driven disease?
  Journal
Trends Immunol 29:61-7 (2008)
DOI:10.1016/j.it.2007.10.008
Reference
  Authors
Kumar A, Abbas W, Herbein G
  Title
TNF and TNF receptor superfamily members in HIV infection: new cellular targets for therapy?
  Journal
Mediators Inflamm 2013:484378 (2013)
DOI:10.1155/2013/484378
Reference
  Authors
Abbas W, Herbein G
  Title
T-Cell Signaling in HIV-1 Infection.
  Journal
Open Virol J 7:57-71 (2013)
DOI:10.2174/1874357920130621001
Reference
  Authors
Cummins NW, Badley AD
  Title
Mechanisms of HIV-associated lymphocyte apoptosis: 2010.
  Journal
Cell Death Dis 1:e99 (2010)
DOI:10.1038/cddis.2010.77
Reference
  Authors
Gougeon ML
  Title
Apoptosis as an HIV strategy to escape immune attack.
  Journal
Nat Rev Immunol 3:392-404 (2003)
DOI:10.1038/nri1087
Reference
  Authors
Fevrier M, Dorgham K, Rebollo A
  Title
CD4+ T cell depletion in human immunodeficiency virus (HIV) infection: role of apoptosis.
  Journal
Viruses 3:586-612 (2011)
DOI:10.3390/v3050586
Reference
  Authors
Ross TM
  Title
Using death to one's advantage: HIV modulation of apoptosis.
  Journal
Leukemia 15:332-41 (2001)
DOI:10.1038/sj.leu.2402028
Reference
  Authors
Hurley JH, Bonifacino JS
  Title
Nef-arious goings-on at the Golgi.
  Journal
Nat Struct Mol Biol 19:661-2 (2012)
DOI:10.1038/nsmb.2304
Reference
  Authors
Wonderlich ER, Leonard JA, Collins KL
  Title
HIV immune evasion disruption of antigen presentation by the HIV Nef protein.
  Journal
Adv Virus Res 80:103-27 (2011)
DOI:10.1016/B978-0-12-385987-7.00005-1
Reference
  Authors
Laguette N, Bregnard C, Benichou S, Basmaciogullari S
  Title
Human immunodeficiency virus (HIV) type-1, HIV-2 and simian immunodeficiency virus Nef proteins.
  Journal
Mol Aspects Med 31:418-33 (2010)
DOI:10.1016/j.mam.2010.05.003
Reference
  Authors
Pereira EA, daSilva LL
  Title
HIV-1 Nef: Taking Control of Protein Trafficking.
  Journal
Traffic 17:976-96 (2016)
DOI:10.1111/tra.12412
Reference
  Authors
Sugden SM, Bego MG, Pham TN, Cohen EA
  Title
Remodeling of the Host Cell Plasma Membrane by HIV-1 Nef and Vpu: A Strategy to Ensure Viral Fitness and Persistence.
  Journal
Viruses 8:67 (2016)
DOI:10.3390/v8030067
Reference
  Authors
Bagga S, Bouchard MJ
  Title
Cell cycle regulation during viral infection.
  Journal
Methods Mol Biol 1170:165-227 (2014)
DOI:10.1007/978-1-4939-0888-2_10
Reference
  Authors
Andersen JL, Planelles V
  Title
The role of Vpr in HIV-1 pathogenesis.
  Journal
Curr HIV Res 3:43-51 (2005)
DOI:10.2174/1570162052772988
Reference
  Authors
Andersen JL, DeHart JL, Zimmerman ES, Ardon O, Kim B, Jacquot G, Benichou S, Planelles V
  Title
HIV-1 Vpr-induced apoptosis is cell cycle dependent and requires Bax but not ANT.
  Journal
PLoS Pathog 2:e127 (2006)
DOI:10.1371/journal.ppat.0020127
Reference
  Authors
Takaori-Kondo A, Shindo K
  Title
HIV-1 Vif: a guardian of the virus that opens up a new era in the research field of restriction factors.
  Journal
Front Microbiol 4:34 (2013)
DOI:10.3389/fmicb.2013.00034
Reference
  Authors
Malim MH
  Title
APOBEC proteins and intrinsic resistance to HIV-1 infection.
  Journal
Philos Trans R Soc Lond B Biol Sci 364:675-87 (2009)
DOI:10.1098/rstb.2008.0185
Reference
  Authors
Hultquist JF, Lengyel JA, Refsland EW, LaRue RS, Lackey L, Brown WL, Harris RS
  Title
Human and rhesus APOBEC3D, APOBEC3F, APOBEC3G, and APOBEC3H demonstrate a conserved capacity to restrict Vif-deficient HIV-1.
  Journal
J Virol 85:11220-34 (2011)
DOI:10.1128/JVI.05238-11
Related
pathway
ocu03050  Proteasome
ocu04010  MAPK signaling pathway
ocu04020  Calcium signaling pathway
ocu04064  NF-kappa B signaling pathway
ocu04110  Cell cycle
ocu04141  Protein processing in endoplasmic reticulum
ocu04142  Lysosome biogenesis
ocu04150  mTOR signaling pathway
ocu04151  PI3K-Akt signaling pathway
ocu04210  Apoptosis
ocu04612  Antigen processing and presentation
ocu04620  Toll-like receptor signaling pathway
ocu04623  Cytosolic DNA-sensing pathway
ocu04668  TNF signaling pathway
ocu04810  Regulation of actin cytoskeleton
KO pathway
ko05170   

DBGET integrated database retrieval system