SSDB Best Search Result

Entry:mby:MSBRM_0887 (880 a.a.)
Name:DNA-directed RNA polymerase subunit A'
KO:K03041 DNA-directed RNA polymerase subunit A'

Search Result : 211 hits (reference genome only)

                 Entry                                       KO      len   SW-score  identity  overlap  
------------------------------------------------------------------ -------------------------------------
mba:Mbar_A3692 DNA-directed RNA polymerase, subunit A'  K03041     880     5778     0.980      880     
afu:AF_1888 DNA-directed RNA polymerase, subunit A' (rp K03041     867     3865     0.648      872     
mth:MTH_1051 DNA-dependent RNA polymerase, subunit A'   K03041     870     3727     0.627      869     
hvo:HVO_0349 DNA-directed RNA polymerase subunit A'     K03041     976     3626     0.588      947     
hma:rrnAC2428 DNA-directed RNA polymerase subunit A     K03041     969     3597     0.589      943     
pfu:PF1563 DNA-directed RNA polymerase subunit a'       K03041     907     3505     0.578      892     
tko:TK1082 DNA-directed RNA polymerase, subunit A'      K03041     906     3496     0.578      892     
mmp:MMP1363 RNA polymerase, alpha subunit               K03041     889     3463     0.577      884     
tac:Ta0391 probable DNA-directed RNA polymerase, chain  K03041     885     3442     0.577      881     
hal:VNG_2664G DNA-directed RNA polymerase subunit A     K03041     926     3293     0.572      907     
sso:SSO0225 DNA-directed RNA polymerase, subunit A' (rp K03041     880     3196     0.547      877     
sai:Saci_0692 DNA-directed RNA polymerase subunit A'    K03041     880     3101     0.531      875     
nmr:Nmar_0348 DNA-directed RNA polymerase subunit A'    K03041    1263     2895     0.501      880     
pai:PAE0666 DNA-directed RNA polymerase subunit A' (rpo K03041     884     2893     0.498      867     
mja:MJ_1042 DNA-directed RNA polymerase, subunit A' (rp K03041    1341     2736     0.407      1333    
ape:APE_1853.1 DNA-directed RNA polymerase subunit A    K03041     891     2660     0.471      875     
osa:9267835 DNA-directed RNA polymerase II subunit RPB1 K03006    1855     2428     0.433      903     
ddi:DDB_G0279193 RNA polymerase II core subunit         K03006    1727     2423     0.432      893     
rcu:8267704 DNA-directed RNA polymerase II subunit RPB1 K03006    1855     2417     0.429      904     
zma:541967 DNA-directed RNA polymerase II subunit 1     K03006    1850     2409     0.431      908     
csv:101220606 DNA-directed RNA polymerase II subunit 1  K03006    1853     2401     0.427      903     
mdm:103400553 DNA-directed RNA polymerase II subunit RP K03006    1820     2394     0.423      905     
ani:ANIA_00809 DNA-directed RNA polymerase II core subu K03006    1745     2390     0.433      900     
ath:AT4G35800 RNA polymerase II large subunit           K03006    1839     2389     0.422      907     
vvi:100264310 DNA-directed RNA polymerase II subunit RP K03006    1848     2378     0.426      902     
cit:102617026 DNA-directed RNA polymerase II subunit RP K03006    1860     2371     0.432      896     
afm:AFUA_1G14680 DNA-dependent RNA polymerase II larges K03006    1750     2363     0.434      901     
aor:AO090003000491 unnamed protein product; RNA polymer K03006    1748     2360     0.431      902     
gmx:100812506 DNA-directed RNA polymerase II subunit RP K03006    1827     2353     0.418      905     
sly:778257 DNA-directed RNA polymerase II subunit RPB1  K03006    1846     2352     0.422      903     
mtr:11434004 DNA-directed RNA polymerase II subunit RPB K03006    1834     2346     0.417      906     
spo:2540292 DNA-directed RNA polymerase II complex larg K03006    1752     2341     0.421      893     
ncr:NCU02103 DNA-directed RNA polymerase II largest sub K03006    1761     2328     0.437      887     
fgr:FGSG_00916 DNA-directed RNA polymerase II largest s K03006    1758     2312     0.442      889     
cal:CAALFM_CR10680WA DNA-directed RNA polymerase II cor K03006    1728     2312     0.421      885     
ame:550829 DNA-directed RNA polymerase II subunit RPB1  K03006    1904     2297     0.413      907     
cel:CELE_F36A4.7 DNA-directed RNA polymerase II subunit K03006    1856     2295     0.420      888     
tca:662266 DNA-directed RNA polymerase II subunit RPB1  K03006    1899     2288     0.411      906     
aga:1278148 DNA-directed RNA polymerase II subunit RPB1 K03006    1877     2287     0.411      913     
dre:553347 DNA-directed RNA polymerase II subunit RPB1  K03006    1965     2286     0.424      901     
ola:101160848 DNA-directed RNA polymerase II subunit RP K03006    1966     2285     0.416      894     
cre:CHLRE_16g680900v5 uncharacterized protein           K03006    1812     2284     0.425      870     
dme:Dmel_CG1554 RNA polymerase II subunit A             K03006    1887     2269     0.411      900     
aag:23687783 DNA-directed RNA polymerase II subunit RPB K03006    1887     2268     0.410      905     
cfa:479483 DNA-directed RNA polymerase II subunit RPB1  K03006    1970     2268     0.422      900     
rno:363633 DNA-directed RNA polymerase II subunit RPB1  K03006    1970     2268     0.422      900     
ocu:100344349 DNA-directed RNA polymerase II subunit RP K03006    1970     2267     0.422      900     
bmor:101745099 DNA-directed RNA polymerase II subunit R K03006    1896     2267     0.406      912     
hsa:5430 RNA polymerase II subunit A                    K03006    1970     2267     0.422      900     
ecb:100072997 DNA-directed RNA polymerase II subunit RP K03006    1970     2267     0.422      900     
mcc:721865 DNA-directed RNA polymerase II subunit RPB1  K03006    1970     2267     0.422      900     
bta:282312 DNA-directed RNA polymerase II subunit RPB1  K03006    1970     2267     0.422      900     
mmu:20020 polymerase (RNA) II (DNA directed) polypeptid K03006    1970     2267     0.422      900     
mdo:100014728 RNA polymerase II subunit A               K03006    1970     2266     0.422      900     
fca:101098500 DNA-directed RNA polymerase II subunit RP K03006    1970     2264     0.422      900     
ssc:100737040 LOW QUALITY PROTEIN: DNA-directed RNA pol K03006    1970     2264     0.422      900     
kla:KLLA0_F05071g uncharacterized protein               K03006    1720     2263     0.420      903     
xtr:116409862 DNA-directed RNA polymerase II subunit RP K03006    1968     2262     0.417      900     
xla:108703583 DNA-directed RNA polymerase II subunit RP K03006    1968     2260     0.413      900     
mgr:MGG_04652 DNA-directed RNA polymerase II largest su K03006    1757     2232     0.419      917     
cne:CNE03720 DNA-directed RNA polymerase II largest sub K03006    1786     2229     0.409      914     
sce:YDL140C DNA-directed RNA polymerase II core subunit K03006    1733     2219     0.416      888     
gga:423727 DNA-directed RNA polymerase III subunit RPC1 K03018    1390     2133     0.392      927     
tps:THAPSDRAFT_28816 DNA directed RNA polymerase III, l K03018    1422     2125     0.391      931     
pti:PHATRDRAFT_15555 hypothetical protein               K03006    1706     2091     0.413      860     
vg:15766152 Phaeocystis globosa virus; DNA-directed RNA           1512     2017     0.392      883     
pfa:PF3D7_0318200 DNA-directed RNA polymerase II subuni K03006    2457     1885     0.345      1020    
tbr:Tb927.4.5020 RNA polymerase IIA largest subunit     K03006    1765     1879     0.363      882     
lma:LMJF_31_2610 RNA polymerase II largest subunit      K03006    1662     1869     0.367      891     
ljo:LJ_0333 DNA-directed RNA polymerase beta' chain     K03046    1224      959     0.280      903     
lin:rpoC RNA polymerase (beta' subunit)                 K03046    1201      959     0.288      932     
lmo:lmo0259 DNA-directed RNA polymerase subunit beta'   K03046    1201      951     0.286      932     
spy:SPy_0099 DNA-dependent RNA polymerase, B' subunit   K03046    1213      944     0.292      891     
bce:BC0123 DNA-directed RNA polymerase beta' chain      K03046    1203      941     0.290      900     
btk:BT9727_0099 DNA-directed RNA polymerase, beta' subu K03046    1203      940     0.290      900     
ban:BA_0103 DNA-directed RNA polymerase, beta' subunit  K03046    1203      935     0.289      900     
spr:spr1776 DNA-dependent RNA polymerase                K03046    1225      926     0.292      893     
spn:SP_1960 DNA-directed RNA polymerase, beta' subunit  K03046    1225      924     0.292      893     
smu:SMU_1989 DNA-dependent RNA polymerase, beta' subuni K03046    1218      921     0.289      890     
bsu:BSU01080 DNA-directed RNA polymerase subunit beta'  K03046    1199      914     0.285      840     
llm:llmg_1981 DNA-directed RNA polymerase, beta' subuni K03046    1207      912     0.272      940     
lcb:LCABL_26800 DNA-directed RNA polymerase subunit bet K03046    1220      907     0.285      909     
lpl:lp_1022 DNA-directed RNA polymerase, beta' subunit  K03046    1213      906     0.286      910     
ser:SERP0184 DNA-directed RNA polymerase, beta' subunit K03046    1207      903     0.279      935     
efa:EF3237 DNA-directed RNA polymerase, beta-prime subu K03046    1217      901     0.273      928     
sao:SAOUHSC_00525 DNA-directed RNA polymerase subunit b K03046    1198      900     0.271      932     
sau:SA0501 RNA polymerase beta-prime chain              K03046    1207      900     0.271      932     
lla:L0138 DNA-directed RNA polymerase beta' chain       K03046    1198      900     0.272      936     
mca:MCA1067 DNA-directed RNA polymerase, beta' subunit  K03046    1400      878     0.260      893     
cdf:CD630_00670 DNA-directed RNA polymerase subunit bet K03046    1161      877     0.286      892     
mta:Moth_2467 DNA-directed RNA polymerase subunit beta' K03046    1164      877     0.278      857     
rco:RC0182 DNA-directed RNA polymerase beta prime chain K03046    1372      876     0.265      914     
rpr:RP141 DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN  K03046    1372      873     0.262      916     
xfa:XF_2632 RNA polymerase beta' subunit                K03046    1430      864     0.284      900     
lpn:lpg0323 DNA-directed RNA polymerase beta' subunit   K03046    1415      862     0.283      906     
tma:TM0459 DNA-directed RNA polymerase, beta' subunit   K03046    1690      859     0.300      714     
ftu:FTT_0145 DNA-directed RNA polymerase, beta subunit  K03046    1417      858     0.274      871     
pae:PA4269 DNA-directed RNA polymerase subunit beta'    K03046    1399      853     0.269      922     
cac:CA_C3142 DNA-dependent RNA polymerase beta' subunit K03046    1182      853     0.268      863     
rle:RL1767 DNA-directed RNA polymerase beta' chain      K03046    1402      852     0.284      893     
acb:A1S_0288 DNA-directed RNA polymerase beta' chain    K03046    1397      850     0.263      892     
cpe:CPE2412 RNA polymerase beta' subunit                K03046    1178      850     0.267      883     
atu:Atu1955 DNA-directed RNA polymerase beta' chain     K03046    1402      847     0.283      892     
cbo:CBO3487 DNA-directed RNA polymerase beta' chain     K03046    1178      846     0.278      932     
aci:ACIAD0308 DNA-directed RNA polymerase beta' chain ( K03046    1413      846     0.272      902     
ret:RHE_CH01668 DNA-directed RNA polymerase beta` chain K03046    1402      843     0.283      892     
cte:CT0156 DNA-directed RNA polymerase, beta-prime subu K03046    1490      843     0.262      953     
sme:SMc01316 Probable DNA-directed RNA polymerase beta' K03046    1401      840     0.286      888     
hpy:HP_1198 DNA-directed RNA polymerase, beta subunit ( K13797    2890      839     0.279      929     
hin:HI_0514 DNA-directed RNA polymerase, beta' chain (r K03046    1415      839     0.283      872     
fnu:FN2035 DNA-directed RNA polymerase beta' chain      K03046    1319      838     0.274      809     
pde:Pden_0749 DNA-directed RNA polymerase subunit beta' K03046    1402      837     0.275      863     
eba:ebA3819 DNA-directed RNA polymerase, beta' chain    K03046    1409      835     0.264      904     
bms:BR1242 DNA-directed RNA polymerase, beta' subunit   K03046    1400      835     0.287      883     
bme:BMEI0750 DNA-directed RNA polymerase beta' chain    K03046    1400      835     0.287      883     
bmf:BAB1_1263 RNA polymerase, alpha subunit:RNA polymer K03046    1400      834     0.287      883     
xom:XOO3393 RNA polymerase beta' subunit                K03046    1405      834     0.270      830     
rsp:RSP_1712 DNA-directed RNA polymerase beta' subunit  K03046    1415      834     0.283      870     
mab:MAB_3868c DNA-directed RNA polymerase beta' chain   K03046    1319      833     0.268      879     
xcc:XCC0889 RNA polymerase beta' subunit                K03046    1405      833     0.270      830     
bfr:BF4191 DNA-directed RNA polymerase beta' chain      K03046    1427      832     0.267      929     
hpj:jhp_1121 DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT  K13797    2890      831     0.277      929     
bja:bll5409 DNA-directed RNA polymerase beta' chain     K03046    1398      830     0.277      875     
son:SO_0225 DNA-directed RNA polymerase beta' subunit R K03046    1405      830     0.266      894     
xac:XAC0966 RNA polymerase beta' subunit                K03046    1404      829     0.271      831     
vpa:VP2921 DNA-directed RNA polymerase, beta' subunit   K03046    1400      828     0.269      901     
vfi:VF_2412 RNA polymerase, beta prime subunit          K03046    1401      827     0.273      877     
bth:BT_2733 DNA-directed RNA polymerase beta' chain     K03046    1427      826     0.271      874     
ccr:CC_0503 DNA-directed RNA polymerase, beta' subunit  K03046    1396      825     0.280      883     
rpa:TX73_016890 DNA-directed RNA polymerase subunit bet K03046    1400      823     0.279      875     
sma:SAVERM_4915 RNA polymerase beta prime subunit       K03046    1299      823     0.270      885     
sco:SCO4655 DNA-directed RNA polymerase beta' chain (fr K03046    1299      822     0.305      655     
aae:aq_1945 RNA polymerase beta prime subunit           K03046    1574      822     0.300      650     
ngo:NGO_1850 DNA-directed RNA polymerase subunit beta'  K03046    1391      821     0.269      876     
hth:HTH_0857 DNA-directed RNA polymerase beta' subunit  K03046    1566      820     0.290      693     
vch:VC_0329 DNA-directed RNA polymerase, beta' subunit  K03046    1401      819     0.270      867     
nme:NMB0133 DNA-directed RNA polymerase, beta' subunit  K03046    1391      819     0.269      876     
ppu:PP_0448 DNA-directed RNA polymerase subunit beta'   K03046    1399      817     0.266      921     
pmu:PM1736 RpoC                                         K03046    1417      817     0.281      874     
sct:SCAT_3567 RNA polymerase (beta' subunit)            K03046    1299      816     0.303      673     
ctb:CTL0566 DNA-directed RNA polymerase beta-prime chai K03046    1396      816     0.280      807     
mlo:mlr0277 RNA polymerase beta subunit                 K03046    1398      814     0.288      890     
fps:FP1175 DNA-directed RNA polymerase beta' subunit Rp K03046    1438      813     0.268      933     
avn:Avin_06180 DNA-directed RNA polymerase, beta' subun K03046    1399      812     0.265      921     
msm:MSMEG_1368 DNA-directed RNA polymerase, beta' subun K03046    1317      812     0.264      885     
eam:EAMY_0240 DNA-directed RNA polymerase beta' chain   K03046    1407      811     0.278      880     
sgr:SGR_2868 RNA polymerase beta prime subunit          K03046    1299      811     0.270      885     
rha:RHA1_ro01961 DNA-directed RNA polymerase beta' subu K03046    1318      811     0.292      665     
sgu:SGLAU_20040 DNA-directed RNA polymerase subunit bet K03046    1299      810     0.273      884     
vvu:VV1_1212 DNA-directed RNA polymerase, beta' subunit K03046    1400      810     0.276      879     
mtc:MT0696 DNA-directed RNA polymerase, beta-prime subu K03046    1316      810     0.268      884     
ctr:CT_314 DNA-directed RNA polymerase subunit beta'    K03046    1396      810     0.278      803     
buc:BU033 DNA-directed RNA polymerase beta' chain       K03046    1407      809     0.274      902     
apl:APL_1728 DNA-directed RNA polymerase beta' chain    K03046    1412      808     0.272      869     
psb:Psyr_4554 DNA-directed RNA polymerase subunit beta' K03046    1399      808     0.266      919     
pst:PSPTO_0620 DNA-directed RNA polymerase, beta' subun K03046    1399      808     0.266      919     
dvu:DVU_2929 DNA-directed RNA polymerase, beta prime su K03046    1385      807     0.251      903     
mtu:Rv0668 DNA-directed RNA polymerase subunit beta'    K03046    1316      807     0.268      884     
hdu:HD_1876 RNA polymerase beta' subunit                K03046    1420      806     0.271      871     
bbu:BB_0388 DNA-directed RNA polymerase, beta' subunit  K03046    1377      806     0.263      911     
enc:ECL_00246 DNA-directed RNA polymerase subunit beta' K03046    1407      805     0.267      879     
sfl:SF4061 DNA-directed RNA polymerase subunit beta'    K03046    1407      805     0.269      878     
ecs:ECs_4911 RNA polymerase beta prime subunit          K03046    1407      805     0.269      878     
eco:b3988 RNA polymerase subunit beta'                  K03046    1407      805     0.269      878     
ecj:JW3951 RNA polymerase, beta prime subunit           K03046    1407      805     0.269      878     
ece:Z5561 RNA polymerase, beta prime subunit            K03046    1407      805     0.269      878     
ddd:Dda3937_00221 RNA polymerase, beta prime subunit    K03046    1407      804     0.268      879     
kpn:KPN_04366 DNA-directed RNA polymerase beta' subunit K03046    1407      804     0.268      870     
seo:STM14_4991 DNA-directed RNA polymerase subunit beta K03046    1407      803     0.268      878     
sty:STY3731 DNA-directed RNA polymerase, beta'-subunit  K03046    1407      803     0.268      878     
stm:STM4154 RNA polymerase, beta prime subunit          K03046    1407      803     0.268      878     
yen:YE0287 DNA-directed RNA polymerase beta' chain      K03046    1406      802     0.266      901     
cau:Caur_0873 DNA-directed RNA polymerase, beta' subuni K03046    1503      801     0.302      679     
wol:WD_0024 DNA-directed RNA polymerase, beta/beta' sub K13797    2837      801     0.269      893     
cro:ROD_37641 DNA-directed RNA polymerase, beta'-subuni K03046    1407      800     0.268      878     
cpn:CPn_0082 RNA Polymerase Beta'                       K03046    1393      800     0.272      795     
amd:AMED_0657 DNA-directed RNA polymerase subunit beta' K03046    1303      799     0.263      872     
yps:YPTB0284 DNA-directed RNA polymerase beta chain     K03046    1406      799     0.265      901     
ypk:y0485 RNA polymerase, beta prime subunit            K03046    1418      799     0.265      901     
ype:YPO3746 DNA-directed RNA polymerase beta' chain     K03046    1406      799     0.265      901     
mle:ML1890 [beta]' subunit of RNA polymerase            K03046    1316      799     0.290      670     
bpe:BP0016 DNA-directed RNA polymerase beta' chain      K03046    1414      798     0.272      869     
smar:SM39_4229 RNA polymerase, beta prime subunit       K03046    1407      797     0.274      879     
reh:H16_A3496 DNA-directed RNA polymerase beta prime su K03046    1415      797     0.272      878     
eca:ECA0224 DNA-directed RNA polymerase beta' subunit   K03046    1407      797     0.266      882     
gsu:GSU2862 DNA-directed RNA polymerase, beta-prime sub K03046    1395      797     0.274      878     
ksk:KSE_31990 putative DNA-directed RNA polymerase subu K03046    1297      796     0.291      677     
blo:BL1204 RpoC                                         K03046    1345      795     0.299      716     
bps:BPSL3220 DNA-directed RNA polymerase beta' chain    K03046    1412      793     0.267      876     
rso:RSc3033 probable dna-directed rna polymerase (beta' K03046    1409      793     0.272      891     
bma:BMA2640 DNA-directed RNA polymerase, beta subunit   K03046    1412      792     0.267      876     
bxe:Bxe_A0307 DNA-directed RNA polymerase subunit beta' K03046    1412      786     0.258      871     
rru:Rru_A2694 DNA-directed RNA polymerase               K03046    1393      786     0.280      870     
cdi:DIP0447 DNA-directed RNA polymerase beta' chain     K03046    1336      785     0.291      750     
tpa:TP_0242 DNA-directed RNA polymerase, beta' subunit  K03046    1416      784     0.279      798     
lil:LA_3419 DNA-directed RNA polymerase subunit beta'   K03046    1404      783     0.277      848     
tth:TT_C1460 DNA-directed RNA polymerase beta' chain    K03046    1513      780     0.274      702     
cje:Cj0479 DNA-directed RNA polymerase subunit beta'    K03046    1517      776     0.278      879     
mpn:MPN_515 DNA-directed RNA polymerase beta' chain     K03046    1290      763     0.279      696     
mge:MG_340 DNA-directed RNA polymerase, beta' subunit   K03046    1292      759     0.283      693     
tde:TDE_2420 DNA-directed RNA polymerase, beta' subunit K03046    1424      746     0.262      845     
dra:DR_0911 DNA-directed RNA polymerase, beta` subunit  K03046    1546      737     0.273      713     
cgl:Cgl0489 DNA-directed RNA polymerase beta' subunit/1 K03046    1333      734     0.290      706     
tel:tll0641 RNA polymerase gamma-subunit                K03046     622      667     0.299      481     
ana:alr1595 RNA polymerase gamma subunit                K03046     625      665     0.312      474     
pma:Pro_1639 DNA-directed RNA polymerase beta' subunit/ K03046     634      663     0.311      486     
syf:Synpcc7942_1523 DNA-directed RNA polymerase         K03046     624      656     0.303      468     
syc:syc2508_d RNA polymerase gamma-subunit              K03046     624      655     0.305      469     
npu:Npun_F4986 DNA-directed RNA polymerase, gamma subun K03046     625      653     0.306      470     
gvi:glr4277 ORF_ID:glr4277                              K03046     608      653     0.302      470     
syn:slr1265 RNA polymerase gamma-subunit                K03046     626      631     0.278      575     

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