SSDB Best Search Result

Entry:smo:SELMODRAFT_446351 (1393 a.a.)
Name:hypothetical protein
KO:K03018 DNA-directed RNA polymerase III subunit RPC1

Search Result : 211 hits (reference genome only)

                 Entry                                       KO      len   SW-score  identity  overlap  
------------------------------------------------------------------ -------------------------------------
vvi:100267354 DNA-directed RNA polymerase III subunit 1 K03018    1383     5844     0.639      1395    
csv:101214828 DNA-directed RNA polymerase III subunit 1 K03018    1400     5684     0.623      1412    
osa:4336254 DNA-directed RNA polymerase III subunit 1   K03018    1383     5682     0.626      1392    
zma:103646285 DNA-directed RNA polymerase III subunit 1 K03018    1394     5655     0.607      1414    
cit:102611247 DNA-directed RNA polymerase III subunit 1 K03018    1404     5610     0.618      1411    
rcu:8271701 DNA-directed RNA polymerase III subunit 1   K03018    1413     5581     0.618      1417    
sly:101265201 DNA-directed RNA polymerase III subunit 1 K03018    1390     5515     0.605      1401    
mdm:103421798 DNA-directed RNA polymerase III subunit 1 K03018    1419     5473     0.604      1428    
gmx:100811292 DNA-directed RNA polymerase III subunit 1 K03018    1391     5389     0.589      1409    
cre:CHLRE_03g165750v5 uncharacterized protein           K03018    1534     5313     0.566      1487    
ath:AT5G60040 nuclear RNA polymerase C1                 K03018    1376     5208     0.587      1402    
mtr:11412126 DNA-directed RNA polymerase III subunit 1  K03018    1400     5101     0.565      1415    
ddi:DDB_G0277199 RNA polymerase III, largest subunit    K03018    1450     4938     0.531      1453    
spo:2541094 DNA-directed RNA polymerase III complex lar K03018    1405     4704     0.516      1405    
ssc:100156229 DNA-directed RNA polymerase III subunit R K03018    1390     4692     0.542      1381    
mcc:100424410 DNA-directed RNA polymerase III subunit R K03018    1390     4684     0.542      1383    
hsa:11128 RNA polymerase III subunit A                  K03018    1390     4683     0.542      1383    
bta:540308 DNA-directed RNA polymerase III subunit RPC1 K03018    1390     4683     0.540      1381    
fca:101094050 DNA-directed RNA polymerase III subunit R K03018    1390     4676     0.540      1381    
ecb:100073003 DNA-directed RNA polymerase III subunit R K03018    1390     4676     0.540      1381    
mmu:218832 polymerase (RNA) III (DNA directed) polypept K03018    1390     4674     0.539      1381    
mdo:100011598 RNA polymerase III subunit A              K03018    1390     4670     0.539      1381    
tps:THAPSDRAFT_28816 DNA directed RNA polymerase III, l K03018    1422     4668     0.527      1388    
ola:101157164 DNA-directed RNA polymerase III subunit R K03018    1390     4663     0.535      1378    
ocu:100355224 DNA-directed RNA polymerase III subunit R K03018    1390     4662     0.540      1383    
rno:361102 DNA-directed RNA polymerase III subunit RPC1 K03018    1390     4660     0.538      1381    
gga:423727 DNA-directed RNA polymerase III subunit RPC1 K03018    1390     4657     0.541      1368    
dre:572258 DNA-directed RNA polymerase III subunit RPC1 K03018    1390     4656     0.539      1368    
kla:KLLA0_E21253g uncharacterized protein               K03018    1457     4646     0.510      1446    
cfa:479256 DNA-directed RNA polymerase III subunit RPC1 K03018    1402     4643     0.535      1390    
xtr:100124725 DNA-directed RNA polymerase III subunit R K03018    1390     4643     0.538      1381    
cal:CAALFM_C407060WA DNA-directed RNA polymerase III co K03018    1448     4602     0.509      1438    
sce:YOR116C DNA-directed RNA polymerase III core subuni K03018    1460     4547     0.506      1426    
pti:PHATRDRAFT_42100 rna polymerase C 157 kDa           K03018    1281     4449     0.530      1328    
tca:656547 DNA-directed RNA polymerase III subunit RPC1 K03018    1390     4426     0.517      1391    
ani:ANIA_10316 hypothetical protein                     K03018    1445     4368     0.490      1415    
aor:AO090020000625 unnamed protein product; RNA polymer K03018    1447     4362     0.491      1406    
ame:725552 DNA-directed RNA polymerase III subunit RPC1 K03018    2011     4356     0.505      1368    
cne:CNF00390 DNA-directed RNA polymerase III largest su K03018    1466     4356     0.501      1444    
afm:AFUA_3G14370 DNA-directed RNA polymerase III larges K03018    1453     4345     0.490      1405    
bmor:101739499 DNA-directed RNA polymerase III subunit  K03018    1392     4305     0.506      1373    
fgr:FGSG_13662 DNA-directed RNA polymerase III largest  K03018    1450     4292     0.479      1420    
mgr:MGG_04477 DNA-directed RNA polymerase III subunit R K03018    1456     4282     0.485      1441    
aag:5573621 DNA-directed RNA polymerase III subunit RPC K03018    1378     4181     0.492      1366    
cel:CELE_C42D4.8 DNA-directed RNA polymerase subunit    K03018    1400     4175     0.491      1395    
ncr:NCU03986 DNA-directed RNA polymerase III largest su K03018    1533     4172     0.476      1474    
aga:1278527 DNA-directed RNA polymerase III subunit RPC K03018    1379     4153     0.491      1367    
dme:Dmel_CG17209 RNA polymerase III subunit A           K03018    1383     4134     0.493      1364    
lma:LMJF_34_0360 putative DNA-directed RNA polymerase I K03018    1582     3363     0.410      1500    
tbr:Tb10.70.4870 DNA-directed RNA polymerase III larges K03018    1530     3317     0.407      1482    
nmr:Nmar_0348 DNA-directed RNA polymerase subunit A'    K03041    1263     2683     0.363      1358    
pfa:PF3D7_1329000 DNA-directed RNA polymerase III subun K03018    2356     2648     0.443      1026    
xla:108703583 DNA-directed RNA polymerase II subunit RP K03006    1968     2502     0.339      1504    
pfu:PF1563 DNA-directed RNA polymerase subunit a'       K03041     907     2239     0.407      927     
tko:TK1082 DNA-directed RNA polymerase, subunit A'      K03041     906     2217     0.404      924     
sso:SSO0225 DNA-directed RNA polymerase, subunit A' (rp K03041     880     2181     0.404      921     
sai:Saci_0692 DNA-directed RNA polymerase subunit A'    K03041     880     2179     0.399      914     
vg:15766152 Phaeocystis globosa virus; DNA-directed RNA           1512     2115     0.309      1500    
pai:PAE0666 DNA-directed RNA polymerase subunit A' (rpo K03041     884     2085     0.390      905     
mmp:MMP1363 RNA polymerase, alpha subunit               K03041     889     2019     0.369      929     
mba:Mbar_A3692 DNA-directed RNA polymerase, subunit A'  K03041     880     2000     0.372      917     
afu:AF_1888 DNA-directed RNA polymerase, subunit A' (rp K03041     867     1988     0.366      912     
mth:MTH_1051 DNA-dependent RNA polymerase, subunit A'   K03041     870     1976     0.370      918     
hvo:HVO_0349 DNA-directed RNA polymerase subunit A'     K03041     976     1948     0.358      990     
tac:Ta0391 probable DNA-directed RNA polymerase, chain  K03041     885     1896     0.355      922     
hma:rrnAC2428 DNA-directed RNA polymerase subunit A     K03041     969     1881     0.359      949     
ape:APE_1853.1 DNA-directed RNA polymerase subunit A    K03041     891     1879     0.368      919     
hal:VNG_2664G DNA-directed RNA polymerase subunit A     K03041     926     1876     0.370      916     
mja:MJ_1042 DNA-directed RNA polymerase, subunit A' (rp K03041    1341     1246     0.260      1382    
spr:spr1776 DNA-dependent RNA polymerase                K03046    1225      970     0.259      1420    
spn:SP_1960 DNA-directed RNA polymerase, beta' subunit  K03046    1225      966     0.259      1420    
ljo:LJ_0333 DNA-directed RNA polymerase beta' chain     K03046    1224      912     0.238      1403    
spy:SPy_0099 DNA-dependent RNA polymerase, B' subunit   K03046    1213      906     0.245      1403    
sct:SCAT_3567 RNA polymerase (beta' subunit)            K03046    1299      905     0.265      1273    
cau:Caur_0873 DNA-directed RNA polymerase, beta' subuni K03046    1503      904     0.258      1300    
bce:BC0123 DNA-directed RNA polymerase beta' chain      K03046    1203      902     0.251      1274    
smu:SMU_1989 DNA-dependent RNA polymerase, beta' subuni K03046    1218      901     0.251      1397    
btk:BT9727_0099 DNA-directed RNA polymerase, beta' subu K03046    1203      900     0.253      1275    
llm:llmg_1981 DNA-directed RNA polymerase, beta' subuni K03046    1207      899     0.246      1393    
lla:L0138 DNA-directed RNA polymerase beta' chain       K03046    1198      899     0.245      1387    
ban:BA_0103 DNA-directed RNA polymerase, beta' subunit  K03046    1203      898     0.253      1275    
sau:SA0501 RNA polymerase beta-prime chain              K03046    1207      898     0.244      1396    
lin:rpoC RNA polymerase (beta' subunit)                 K03046    1201      898     0.249      1407    
ser:SERP0184 DNA-directed RNA polymerase, beta' subunit K03046    1207      897     0.244      1397    
sao:SAOUHSC_00525 DNA-directed RNA polymerase subunit b K03046    1198      896     0.245      1385    
mta:Moth_2467 DNA-directed RNA polymerase subunit beta' K03046    1164      894     0.259      1389    
lmo:lmo0259 DNA-directed RNA polymerase subunit beta'   K03046    1201      889     0.247      1406    
efa:EF3237 DNA-directed RNA polymerase, beta-prime subu K03046    1217      887     0.244      1416    
sgu:SGLAU_20040 DNA-directed RNA polymerase subunit bet K03046    1299      884     0.257      1260    
bsu:BSU01080 DNA-directed RNA polymerase subunit beta'  K03046    1199      882     0.251      1402    
lpl:lp_1022 DNA-directed RNA polymerase, beta' subunit  K03046    1213      881     0.238      1418    
cpe:CPE2412 RNA polymerase beta' subunit                K03046    1178      878     0.250      1382    
blo:BL1204 RpoC                                         K03046    1345      874     0.241      1280    
sma:SAVERM_4915 RNA polymerase beta prime subunit       K03046    1299      863     0.254      1271    
cdf:CD630_00670 DNA-directed RNA polymerase subunit bet K03046    1161      854     0.248      1392    
sco:SCO4655 DNA-directed RNA polymerase beta' chain (fr K03046    1299      853     0.255      1276    
sgr:SGR_2868 RNA polymerase beta prime subunit          K03046    1299      852     0.257      1268    
ksk:KSE_31990 putative DNA-directed RNA polymerase subu K03046    1297      841     0.249      1262    
lcb:LCABL_26800 DNA-directed RNA polymerase subunit bet K03046    1220      839     0.240      1411    
mab:MAB_3868c DNA-directed RNA polymerase beta' chain   K03046    1319      837     0.240      1294    
cbo:CBO3487 DNA-directed RNA polymerase beta' chain     K03046    1178      834     0.247      1383    
amd:AMED_0657 DNA-directed RNA polymerase subunit beta' K03046    1303      826     0.250      1191    
mge:MG_340 DNA-directed RNA polymerase, beta' subunit   K03046    1292      826     0.259      1201    
rha:RHA1_ro01961 DNA-directed RNA polymerase beta' subu K03046    1318      824     0.242      1295    
mpn:MPN_515 DNA-directed RNA polymerase beta' chain     K03046    1290      822     0.258      1204    
mtc:MT0696 DNA-directed RNA polymerase, beta-prime subu K03046    1316      817     0.247      1288    
mtu:Rv0668 DNA-directed RNA polymerase subunit beta'    K03046    1316      816     0.247      1288    
cac:CA_C3142 DNA-dependent RNA polymerase beta' subunit K03046    1182      815     0.248      1404    
cdi:DIP0447 DNA-directed RNA polymerase beta' chain     K03046    1336      806     0.243      1275    
cgl:Cgl0489 DNA-directed RNA polymerase beta' subunit/1 K03046    1333      802     0.242      1292    
dra:DR_0911 DNA-directed RNA polymerase, beta` subunit  K03046    1546      800     0.252      1150    
mle:ML1890 [beta]' subunit of RNA polymerase            K03046    1316      792     0.247      1272    
bfr:BF4191 DNA-directed RNA polymerase beta' chain      K03046    1427      788     0.254      1146    
yen:YE0287 DNA-directed RNA polymerase beta' chain      K03046    1406      785     0.236      1502    
bth:BT_2733 DNA-directed RNA polymerase beta' chain     K03046    1427      785     0.256      1146    
ccr:CC_0503 DNA-directed RNA polymerase, beta' subunit  K03046    1396      785     0.243      1519    
msm:MSMEG_1368 DNA-directed RNA polymerase, beta' subun K03046    1317      780     0.248      1267    
yps:YPTB0284 DNA-directed RNA polymerase beta chain     K03046    1406      777     0.236      1500    
ypk:y0485 RNA polymerase, beta prime subunit            K03046    1418      777     0.236      1500    
ype:YPO3746 DNA-directed RNA polymerase beta' chain     K03046    1406      777     0.236      1500    
reh:H16_A3496 DNA-directed RNA polymerase beta prime su K03046    1415      776     0.235      1513    
tth:TT_C1460 DNA-directed RNA polymerase beta' chain    K03046    1513      775     0.260      1152    
sfl:SF4061 DNA-directed RNA polymerase subunit beta'    K03046    1407      771     0.233      1508    
ecs:ECs_4911 RNA polymerase beta prime subunit          K03046    1407      771     0.233      1508    
eco:b3988 RNA polymerase subunit beta'                  K03046    1407      771     0.233      1508    
ecj:JW3951 RNA polymerase, beta prime subunit           K03046    1407      771     0.233      1508    
ece:Z5561 RNA polymerase, beta prime subunit            K03046    1407      771     0.233      1508    
smar:SM39_4229 RNA polymerase, beta prime subunit       K03046    1407      767     0.237      1508    
kpn:KPN_04366 DNA-directed RNA polymerase beta' subunit K03046    1407      767     0.241      1515    
vfi:VF_2412 RNA polymerase, beta prime subunit          K03046    1401      764     0.242      1520    
ftu:FTT_0145 DNA-directed RNA polymerase, beta subunit  K03046    1417      763     0.249      1256    
vch:VC_0329 DNA-directed RNA polymerase, beta' subunit  K03046    1401      763     0.254      1214    
eca:ECA0224 DNA-directed RNA polymerase beta' subunit   K03046    1407      761     0.233      1481    
xac:XAC0966 RNA polymerase beta' subunit                K03046    1404      760     0.244      1316    
vvu:VV1_1212 DNA-directed RNA polymerase, beta' subunit K03046    1400      759     0.254      1206    
seo:STM14_4991 DNA-directed RNA polymerase subunit beta K03046    1407      758     0.235      1513    
mca:MCA1067 DNA-directed RNA polymerase, beta' subunit  K03046    1400      758     0.227      1504    
sty:STY3731 DNA-directed RNA polymerase, beta'-subunit  K03046    1407      758     0.235      1513    
stm:STM4154 RNA polymerase, beta prime subunit          K03046    1407      758     0.235      1513    
nme:NMB0133 DNA-directed RNA polymerase, beta' subunit  K03046    1391      758     0.235      1499    
acb:A1S_0288 DNA-directed RNA polymerase beta' chain    K03046    1397      757     0.232      1498    
vpa:VP2921 DNA-directed RNA polymerase, beta' subunit   K03046    1400      757     0.253      1211    
enc:ECL_00246 DNA-directed RNA polymerase subunit beta' K03046    1407      756     0.237      1505    
xcc:XCC0889 RNA polymerase beta' subunit                K03046    1405      755     0.246      1320    
xom:XOO3393 RNA polymerase beta' subunit                K03046    1405      754     0.246      1320    
pmu:PM1736 RpoC                                         K03046    1417      753     0.240      1322    
rso:RSc3033 probable dna-directed rna polymerase (beta' K03046    1409      751     0.233      1500    
fnu:FN2035 DNA-directed RNA polymerase beta' chain      K03046    1319      751     0.240      1301    
ngo:NGO_1850 DNA-directed RNA polymerase subunit beta'  K03046    1391      750     0.234      1499    
bma:BMA2640 DNA-directed RNA polymerase, beta subunit   K03046    1412      748     0.229      1496    
bps:BPSL3220 DNA-directed RNA polymerase beta' chain    K03046    1412      748     0.229      1496    
hpj:jhp_1121 DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT  K13797    2890      748     0.237      1297    
aci:ACIAD0308 DNA-directed RNA polymerase beta' chain ( K03046    1413      747     0.234      1494    
hpy:HP_1198 DNA-directed RNA polymerase, beta subunit ( K13797    2890      746     0.236      1297    
cro:ROD_37641 DNA-directed RNA polymerase, beta'-subuni K03046    1407      745     0.232      1507    
lpn:lpg0323 DNA-directed RNA polymerase beta' subunit   K03046    1415      745     0.232      1493    
ddd:Dda3937_00221 RNA polymerase, beta prime subunit    K03046    1407      741     0.231      1506    
aae:aq_1945 RNA polymerase beta prime subunit           K03046    1574      741     0.264      939     
hdu:HD_1876 RNA polymerase beta' subunit                K03046    1420      738     0.241      1530    
son:SO_0225 DNA-directed RNA polymerase beta' subunit R K03046    1405      738     0.235      1499    
buc:BU033 DNA-directed RNA polymerase beta' chain       K03046    1407      737     0.234      1509    
eam:EAMY_0240 DNA-directed RNA polymerase beta' chain   K03046    1407      735     0.234      1522    
ctb:CTL0566 DNA-directed RNA polymerase beta-prime chai K03046    1396      734     0.253      983     
hin:HI_0514 DNA-directed RNA polymerase, beta' chain (r K03046    1415      734     0.236      1491    
bxe:Bxe_A0307 DNA-directed RNA polymerase subunit beta' K03046    1412      733     0.227      1496    
eba:ebA3819 DNA-directed RNA polymerase, beta' chain    K03046    1409      733     0.229      1508    
pde:Pden_0749 DNA-directed RNA polymerase subunit beta' K03046    1402      732     0.259      1075    
ctr:CT_314 DNA-directed RNA polymerase subunit beta'    K03046    1396      731     0.253      984     
cte:CT0156 DNA-directed RNA polymerase, beta-prime subu K03046    1490      729     0.253      1091    
rpr:RP141 DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN  K03046    1372      726     0.228      1498    
cpn:CPn_0082 RNA Polymerase Beta'                       K03046    1393      725     0.235      1268    
rru:Rru_A2694 DNA-directed RNA polymerase               K03046    1393      724     0.234      1498    
hth:HTH_0857 DNA-directed RNA polymerase beta' subunit  K03046    1566      722     0.272      926     
rpa:TX73_016890 DNA-directed RNA polymerase subunit bet K03046    1400      722     0.230      1372    
rsp:RSP_1712 DNA-directed RNA polymerase beta' subunit  K03046    1415      719     0.255      1315    
bpe:BP0016 DNA-directed RNA polymerase beta' chain      K03046    1414      718     0.231      1493    
bmf:BAB1_1263 RNA polymerase, alpha subunit:RNA polymer K03046    1400      717     0.256      1122    
apl:APL_1728 DNA-directed RNA polymerase beta' chain    K03046    1412      716     0.232      1491    
bms:BR1242 DNA-directed RNA polymerase, beta' subunit   K03046    1400      716     0.251      1122    
bme:BMEI0750 DNA-directed RNA polymerase beta' chain    K03046    1400      716     0.251      1122    
rco:RC0182 DNA-directed RNA polymerase beta prime chain K03046    1372      709     0.231      1510    
avn:Avin_06180 DNA-directed RNA polymerase, beta' subun K03046    1399      708     0.241      1251    
pae:PA4269 DNA-directed RNA polymerase subunit beta'    K03046    1399      707     0.233      1498    
gsu:GSU2862 DNA-directed RNA polymerase, beta-prime sub K03046    1395      706     0.234      1213    
dvu:DVU_2929 DNA-directed RNA polymerase, beta prime su K03046    1385      704     0.245      1086    
mlo:mlr0277 RNA polymerase beta subunit                 K03046    1398      703     0.231      1461    
sme:SMc01316 Probable DNA-directed RNA polymerase beta' K03046    1401      698     0.225      1489    
cje:Cj0479 DNA-directed RNA polymerase subunit beta'    K03046    1517      696     0.241      1079    
ppu:PP_0448 DNA-directed RNA polymerase subunit beta'   K03046    1399      692     0.247      1074    
fps:FP1175 DNA-directed RNA polymerase beta' subunit Rp K03046    1438      691     0.250      1007    
xfa:XF_2632 RNA polymerase beta' subunit                K03046    1430      691     0.246      1261    
atu:Atu1955 DNA-directed RNA polymerase beta' chain     K03046    1402      688     0.226      1492    
ret:RHE_CH01668 DNA-directed RNA polymerase beta` chain K03046    1402      686     0.231      1501    
tma:TM0459 DNA-directed RNA polymerase, beta' subunit   K03046    1690      686     0.225      1302    
rle:RL1767 DNA-directed RNA polymerase beta' chain      K03046    1402      681     0.225      1464    
psb:Psyr_4554 DNA-directed RNA polymerase subunit beta' K03046    1399      681     0.242      1075    
pst:PSPTO_0620 DNA-directed RNA polymerase, beta' subun K03046    1399      680     0.242      1075    
bja:bll5409 DNA-directed RNA polymerase beta' chain     K03046    1398      680     0.263      832     
wol:WD_0024 DNA-directed RNA polymerase, beta/beta' sub K13797    2837      673     0.243      1038    
bbu:BB_0388 DNA-directed RNA polymerase, beta' subunit  K03046    1377      666     0.240      1209    
tde:TDE_2420 DNA-directed RNA polymerase, beta' subunit K03046    1424      657     0.264      832     
lil:LA_3419 DNA-directed RNA polymerase subunit beta'   K03046    1404      655     0.224      1417    
tpa:TP_0242 DNA-directed RNA polymerase, beta' subunit  K03046    1416      655     0.251      996     
syf:Synpcc7942_1523 DNA-directed RNA polymerase         K03046     624      490     0.269      499     
syc:syc2508_d RNA polymerase gamma-subunit              K03046     624      490     0.270      500     
pma:Pro_1639 DNA-directed RNA polymerase beta' subunit/ K03046     634      485     0.316      310     
gvi:glr4277 ORF_ID:glr4277                              K03046     608      482     0.275      488     
tel:tll0641 RNA polymerase gamma-subunit                K03046     622      476     0.303      347     
ana:alr1595 RNA polymerase gamma subunit                K03046     625      470     0.256      520     
npu:Npun_F4986 DNA-directed RNA polymerase, gamma subun K03046     625      463     0.257      499     
syn:slr1265 RNA polymerase gamma-subunit                K03046     626      456     0.266      497     

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